PDB Chemical Component 2GF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2GF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O2 |
C2 |
1.371 |
1.220 |
O4' |
C4' |
1.361 |
1.437 |
O4' |
C1' |
1.394 |
1.445 |
C4' |
C5' |
1.516 |
1.530 |
C4' |
C3' |
1.463 |
1.517 |
C5' |
O5' |
1.354 |
1.429 |
C2 |
N3 |
1.430 |
1.332 |
C2 |
N1 |
1.395 |
1.346 |
C1' |
N1 |
1.418 |
1.466 |
C1' |
C2' |
1.509 |
1.549 |
N3 |
C4 |
1.358 |
1.327 |
OP1 |
P |
1.479 |
1.610 |
N1 |
C6 |
1.395 |
1.364 |
P |
O5' |
1.525 |
1.610 |
P |
OP2 |
1.485 |
1.479 |
C3' |
O3' |
1.217 |
1.208 |
C3' |
C2' |
1.476 |
1.524 |
C4 |
N4 |
1.430 |
1.376 |
C4 |
C5 |
1.429 |
1.410 |
C6 |
C5 |
1.382 |
1.355 |
C5 |
CL |
1.739 |
1.737 |
OP1 |
H1 |
0.950 |
0.967 |
C5' |
H5'1 |
1.100 |
1.090 |
C5' |
H5'2 |
1.099 |
1.090 |
C4' |
H4' |
1.100 |
1.090 |
C2' |
H2'2 |
1.100 |
1.090 |
C2' |
H2' |
1.100 |
1.090 |
C1' |
H1' |
1.100 |
1.090 |
N4 |
H42 |
1.000 |
0.970 |
N4 |
H41 |
1.000 |
0.970 |
C6 |
H6 |
1.080 |
1.079 |
P |
OP3 |
|
1.610 |
OP3 |
H4 |
|
0.967 |
Bond Angles for 2GF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C2 |
N3 |
119.6 |
119.4 |
O4' |
C4' |
C3' |
107.7 |
107.6 |
O4' |
C4' |
H4' |
109.4 |
109.9 |
O4' |
C1' |
N1 |
103.7 |
110.7 |
O4' |
C1' |
C2' |
107.1 |
103.1 |
O4' |
C1' |
H1' |
111.3 |
110.7 |
C4' |
C5' |
H5'1 |
108.7 |
109.5 |
C4' |
C5' |
H5'2 |
108.7 |
109.5 |
C4' |
C3' |
O3' |
120.3 |
127.6 |
C4' |
C3' |
C2' |
108.0 |
104.8 |
C3' |
C4' |
H4' |
108.0 |
109.8 |
C2 |
N3 |
C4 |
117.9 |
120.7 |
C2 |
N1 |
C6 |
119.0 |
120.4 |
C1' |
N1 |
C6 |
119.2 |
119.8 |
N1 |
C1' |
H1' |
110.9 |
110.6 |
C1' |
C2' |
H2'2 |
112.1 |
110.9 |
C1' |
C2' |
H2' |
112.1 |
111.0 |
N3 |
C4 |
N4 |
120.4 |
120.2 |
N3 |
C4 |
C5 |
119.9 |
119.6 |
OP1 |
P |
O5' |
117.1 |
109.5 |
OP1 |
P |
OP2 |
105.2 |
109.5 |
OP1 |
P |
OP3 |
|
109.5 |
N1 |
C6 |
C5 |
119.0 |
119.2 |
N1 |
C6 |
H6 |
120.5 |
120.4 |
OP2 |
P |
O5' |
117.7 |
109.5 |
O5' |
P |
OP3 |
|
109.4 |
OP2 |
P |
OP3 |
|
109.5 |
O3' |
C3' |
C2' |
131.6 |
127.6 |
C3' |
C2' |
H2'2 |
112.1 |
110.8 |
C3' |
C2' |
H2' |
112.1 |
110.8 |
N4 |
C4 |
C5 |
119.7 |
120.2 |
C4 |
N4 |
H42 |
120.0 |
120.0 |
C4 |
N4 |
H41 |
120.0 |
120.0 |
C4 |
C5 |
CL |
118.9 |
120.5 |
C6 |
C5 |
CL |
119.2 |
120.5 |
H5'1 |
C5' |
H5'2 |
109.5 |
109.5 |
H2'2 |
C2' |
H2' |
109.5 |
110.7 |
H42 |
N4 |
H41 |
120.0 |
120.0 |
P |
OP3 |
H4 |
|
114.0 |
Torsion Angles for 2GF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C2 |
N3 |
C4 |
180.4 |
180.0 |
O2 |
C2 |
N1 |
C6 |
179.5 |
180.2 |
O4' |
C4' |
C5' |
H5'1 |
75.1 |
306.8 |
O4' |
C4' |
C5' |
H5'2 |
194.2 |
186.8 |
O4' |
C4' |
C3' |
O3' |
185.3 |
178.2 |
O4' |
C4' |
C3' |
C2' |
2.1 |
358.2 |
C3' |
C4' |
O4' |
H4' |
117.1 |
119.6 |
C1' |
O4' |
C4' |
C3' |
19.2 |
26.1 |
C1' |
O4' |
C4' |
H4' |
262.0 |
266.5 |
O4' |
C1' |
N1 |
C6 |
57.6 |
233.5 |
N1 |
C1' |
O4' |
H1' |
119.3 |
123.1 |
O4' |
C1' |
C2' |
H2'2 |
150.3 |
278.5 |
O4' |
C1' |
C2' |
H2' |
273.8 |
155.0 |
H5'1 |
C5' |
C4' |
H5'2 |
240.8 |
120.0 |
O4' |
C4' |
C3' |
H4' |
242.0 |
240.3 |
C3' |
C4' |
C5' |
H5'1 |
196.4 |
65.0 |
C3' |
C4' |
C5' |
H5'2 |
315.5 |
305.0 |
O3' |
C3' |
C4' |
C2' |
183.2 |
180.0 |
C4' |
C3' |
C2' |
H2'2 |
221.6 |
97.3 |
C4' |
C3' |
C2' |
H2' |
98.1 |
220.6 |
C5' |
O5' |
P |
OP3 |
|
175.0 |
N3 |
C2 |
N1 |
C6 |
0.0 |
0.3 |
C2 |
N3 |
C4 |
N4 |
181.1 |
180.0 |
C2 |
N3 |
C4 |
C5 |
0.1 |
0.0 |
C1' |
N1 |
C2 |
C6 |
179.4 |
179.7 |
C2 |
N1 |
C1' |
H1' |
357.7 |
176.9 |
C2 |
N1 |
C6 |
C5 |
0.1 |
359.5 |
C2 |
N1 |
C6 |
H6 |
180.1 |
179.7 |
O4' |
C1' |
N1 |
C2' |
116.1 |
113.7 |
O4' |
C1' |
N1 |
H1' |
240.5 |
236.9 |
C2 |
N1 |
C1' |
C6 |
180.6 |
180.3 |
N1 |
C1' |
C2' |
H2'2 |
264.4 |
36.9 |
N1 |
C1' |
C2' |
H2' |
27.9 |
273.4 |
C1' |
N1 |
C6 |
C5 |
180.7 |
179.8 |
C1' |
N1 |
C6 |
H6 |
0.7 |
360.0 |
O4' |
C1' |
C2' |
N1 |
245.9 |
241.6 |
O4' |
C1' |
C2' |
H1' |
120.8 |
118.5 |
C3' |
C2' |
C1' |
H2'2 |
241.8 |
118.2 |
C3' |
C2' |
C1' |
H2' |
118.3 |
241.7 |
H2'2 |
C2' |
C1' |
H2' |
236.5 |
123.5 |
N4 |
C4 |
N3 |
C5 |
181.0 |
180.0 |
N3 |
C4 |
N4 |
H42 |
0.0 |
0.1 |
N3 |
C4 |
N4 |
H41 |
180.0 |
180.0 |
N3 |
C4 |
C5 |
CL |
179.1 |
180.0 |
OP2 |
P |
OP1 |
O5' |
227.1 |
240.0 |
O5' |
P |
OP1 |
OP3 |
|
240.1 |
OP2 |
P |
OP1 |
OP3 |
|
120.0 |
OP1 |
P |
OP3 |
H4 |
|
60.0 |
C6 |
N1 |
C1' |
H1' |
177.1 |
356.6 |
N1 |
C6 |
C5 |
CL |
180.8 |
180.3 |
OP1 |
P |
O5' |
OP2 |
232.9 |
240.0 |
OP1 |
P |
O5' |
OP3 |
|
120.0 |
OP2 |
P |
O5' |
OP3 |
|
240.0 |
O5' |
P |
OP3 |
H4 |
|
179.9 |
OP1 |
P |
OP2 |
O5' |
132.6 |
120.0 |
OP1 |
P |
OP2 |
OP3 |
|
240.0 |
O5' |
P |
OP2 |
OP3 |
|
120.0 |
OP2 |
P |
OP3 |
H4 |
|
300.0 |
C4' |
C3' |
O3' |
C2' |
175.9 |
180.0 |
O3' |
C3' |
C4' |
H4' |
303.4 |
297.9 |
O3' |
C3' |
C2' |
H2'2 |
37.9 |
277.3 |
O3' |
C3' |
C2' |
H2' |
274.4 |
40.6 |
O4' |
C1' |
C2' |
C3' |
32.1 |
36.7 |
C4' |
C3' |
C2' |
O3' |
183.7 |
180.0 |
C2' |
C3' |
C4' |
H4' |
120.2 |
117.9 |
C1' |
C2' |
C3' |
H2'2 |
118.2 |
241.7 |
C1' |
C2' |
C3' |
H2' |
241.7 |
118.4 |
H2'2 |
C2' |
C3' |
H2' |
123.5 |
236.7 |
N3 |
C4 |
N4 |
C5 |
179.0 |
180.0 |
N4 |
C4 |
C5 |
CL |
358.1 |
0.0 |
H42 |
N4 |
C4 |
H41 |
180.0 |
180.1 |
N3 |
C4 |
C5 |
N4 |
181.0 |
180.0 |
N1 |
C6 |
C5 |
C4 |
359.8 |
0.5 |
C5 |
C4 |
N4 |
H42 |
181.0 |
180.0 |
C5 |
C4 |
N4 |
H41 |
1.0 |
359.9 |
C6 |
C5 |
C4 |
CL |
181.0 |
179.7 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
C4 |
C5 |
C6 |
CL |
179.0 |
180.3 |
H1 |
OP1 |
P |
O5' |
132.9 |
300.0 |
H1 |
OP1 |
P |
OP2 |
360.0 |
180.0 |
H1 |
OP1 |
P |
OP3 |
|
60.0 |
C4' |
C5' |
H5'1 |
H5'2 |
118.7 |
240.0 |
C4' |
C5' |
H5'2 |
H5'1 |
241.3 |
120.0 |
O4' |
C4' |
H4' |
C3' |
116.9 |
118.2 |
H4' |
C4' |
C5' |
H5'1 |
314.7 |
185.8 |
H4' |
C4' |
C5' |
H5'2 |
73.8 |
65.8 |
H4' |
C4' |
C3' |
O3' |
303.4 |
297.9 |
H4' |
C4' |
C3' |
C2' |
120.2 |
117.9 |
C1' |
C2' |
H2'2 |
H2' |
125.0 |
236.4 |
C3' |
C2' |
H2'2 |
H2' |
235.0 |
123.4 |
C1' |
C2' |
H2' |
H2'2 |
235.0 |
123.6 |
C3' |
C2' |
H2' |
H2'2 |
125.0 |
236.6 |
O4' |
C1' |
H1' |
N1 |
114.8 |
123.1 |
O4' |
C1' |
H1' |
C2' |
241.8 |
246.3 |
H1' |
C1' |
N1 |
C6 |
177.1 |
356.6 |
H1' |
C1' |
C2' |
H2'2 |
29.5 |
160.0 |
H1' |
C1' |
C2' |
H2' |
153.0 |
36.5 |
H42 |
N4 |
C4 |
C5 |
181.0 |
180.0 |
C4 |
N4 |
H42 |
H41 |
180.0 |
179.9 |
H41 |
N4 |
C4 |
C5 |
1.0 |
359.9 |
C4 |
N4 |
H41 |
H42 |
180.0 |
180.1 |
N1 |
C6 |
H6 |
C5 |
180.0 |
179.8 |
H6 |
C6 |
C5 |
CL |
0.8 |
0.0 |
OP1 |
P |
OP3 |
O5' |
|
240.1 |
OP1 |
P |
OP3 |
OP2 |
|
120.0 |
OP2 |
P |
OP3 |
O5' |
|
120.0 |