PDB Chemical Component 2GF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2GF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2 C2 1.371 1.220
O4' C4' 1.361 1.437
O4' C1' 1.394 1.445
C4' C5' 1.516 1.530
C4' C3' 1.463 1.517
C5' O5' 1.354 1.429
C2 N3 1.430 1.332
C2 N1 1.395 1.346
C1' N1 1.418 1.466
C1' C2' 1.509 1.549
N3 C4 1.358 1.327
OP1 P 1.479 1.610
N1 C6 1.395 1.364
P O5' 1.525 1.610
P OP2 1.485 1.479
C3' O3' 1.217 1.208
C3' C2' 1.476 1.524
C4 N4 1.430 1.376
C4 C5 1.429 1.410
C6 C5 1.382 1.355
C5 CL 1.739 1.737
OP1 H1 0.950 0.967
C5' H5'1 1.100 1.090
C5' H5'2 1.099 1.090
C4' H4' 1.100 1.090
C2' H2'2 1.100 1.090
C2' H2' 1.100 1.090
C1' H1' 1.100 1.090
N4 H42 1.000 0.970
N4 H41 1.000 0.970
C6 H6 1.080 1.079
P OP3   1.610
OP3 H4   0.967

Bond Angles for 2GF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 C2 N3 119.6 119.4
O4' C4' C3' 107.7 107.6
O4' C4' H4' 109.4 109.9
O4' C1' N1 103.7 110.7
O4' C1' C2' 107.1 103.1
O4' C1' H1' 111.3 110.7
C4' C5' H5'1 108.7 109.5
C4' C5' H5'2 108.7 109.5
C4' C3' O3' 120.3 127.6
C4' C3' C2' 108.0 104.8
C3' C4' H4' 108.0 109.8
C2 N3 C4 117.9 120.7
C2 N1 C6 119.0 120.4
C1' N1 C6 119.2 119.8
N1 C1' H1' 110.9 110.6
C1' C2' H2'2 112.1 110.9
C1' C2' H2' 112.1 111.0
N3 C4 N4 120.4 120.2
N3 C4 C5 119.9 119.6
OP1 P O5' 117.1 109.5
OP1 P OP2 105.2 109.5
OP1 P OP3   109.5
N1 C6 C5 119.0 119.2
N1 C6 H6 120.5 120.4
OP2 P O5' 117.7 109.5
O5' P OP3   109.4
OP2 P OP3   109.5
O3' C3' C2' 131.6 127.6
C3' C2' H2'2 112.1 110.8
C3' C2' H2' 112.1 110.8
N4 C4 C5 119.7 120.2
C4 N4 H42 120.0 120.0
C4 N4 H41 120.0 120.0
C4 C5 CL 118.9 120.5
C6 C5 CL 119.2 120.5
H5'1 C5' H5'2 109.5 109.5
H2'2 C2' H2' 109.5 110.7
H42 N4 H41 120.0 120.0
P OP3 H4   114.0

Torsion Angles for 2GF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C2 N3 C4 180.4 180.0
O2 C2 N1 C6 179.5 180.2
O4' C4' C5' H5'1 75.1 306.8
O4' C4' C5' H5'2 194.2 186.8
O4' C4' C3' O3' 185.3 178.2
O4' C4' C3' C2' 2.1 358.2
C3' C4' O4' H4' 117.1 119.6
C1' O4' C4' C3' 19.2 26.1
C1' O4' C4' H4' 262.0 266.5
O4' C1' N1 C6 57.6 233.5
N1 C1' O4' H1' 119.3 123.1
O4' C1' C2' H2'2 150.3 278.5
O4' C1' C2' H2' 273.8 155.0
H5'1 C5' C4' H5'2 240.8 120.0
O4' C4' C3' H4' 242.0 240.3
C3' C4' C5' H5'1 196.4 65.0
C3' C4' C5' H5'2 315.5 305.0
O3' C3' C4' C2' 183.2 180.0
C4' C3' C2' H2'2 221.6 97.3
C4' C3' C2' H2' 98.1 220.6
C5' O5' P OP3   175.0
N3 C2 N1 C6 0.0 0.3
C2 N3 C4 N4 181.1 180.0
C2 N3 C4 C5 0.1 0.0
C1' N1 C2 C6 179.4 179.7
C2 N1 C1' H1' 357.7 176.9
C2 N1 C6 C5 0.1 359.5
C2 N1 C6 H6 180.1 179.7
O4' C1' N1 C2' 116.1 113.7
O4' C1' N1 H1' 240.5 236.9
C2 N1 C1' C6 180.6 180.3
N1 C1' C2' H2'2 264.4 36.9
N1 C1' C2' H2' 27.9 273.4
C1' N1 C6 C5 180.7 179.8
C1' N1 C6 H6 0.7 360.0
O4' C1' C2' N1 245.9 241.6
O4' C1' C2' H1' 120.8 118.5
C3' C2' C1' H2'2 241.8 118.2
C3' C2' C1' H2' 118.3 241.7
H2'2 C2' C1' H2' 236.5 123.5
N4 C4 N3 C5 181.0 180.0
N3 C4 N4 H42 0.0 0.1
N3 C4 N4 H41 180.0 180.0
N3 C4 C5 CL 179.1 180.0
OP2 P OP1 O5' 227.1 240.0
O5' P OP1 OP3   240.1
OP2 P OP1 OP3   120.0
OP1 P OP3 H4   60.0
C6 N1 C1' H1' 177.1 356.6
N1 C6 C5 CL 180.8 180.3
OP1 P O5' OP2 232.9 240.0
OP1 P O5' OP3   120.0
OP2 P O5' OP3   240.0
O5' P OP3 H4   179.9
OP1 P OP2 O5' 132.6 120.0
OP1 P OP2 OP3   240.0
O5' P OP2 OP3   120.0
OP2 P OP3 H4   300.0
C4' C3' O3' C2' 175.9 180.0
O3' C3' C4' H4' 303.4 297.9
O3' C3' C2' H2'2 37.9 277.3
O3' C3' C2' H2' 274.4 40.6
O4' C1' C2' C3' 32.1 36.7
C4' C3' C2' O3' 183.7 180.0
C2' C3' C4' H4' 120.2 117.9
C1' C2' C3' H2'2 118.2 241.7
C1' C2' C3' H2' 241.7 118.4
H2'2 C2' C3' H2' 123.5 236.7
N3 C4 N4 C5 179.0 180.0
N4 C4 C5 CL 358.1 0.0
H42 N4 C4 H41 180.0 180.1
N3 C4 C5 N4 181.0 180.0
N1 C6 C5 C4 359.8 0.5
C5 C4 N4 H42 181.0 180.0
C5 C4 N4 H41 1.0 359.9
C6 C5 C4 CL 181.0 179.7
N1 C6 C5 H6 180.0 180.2
C4 C5 C6 CL 179.0 180.3
H1 OP1 P O5' 132.9 300.0
H1 OP1 P OP2 360.0 180.0
H1 OP1 P OP3   60.0
C4' C5' H5'1 H5'2 118.7 240.0
C4' C5' H5'2 H5'1 241.3 120.0
O4' C4' H4' C3' 116.9 118.2
H4' C4' C5' H5'1 314.7 185.8
H4' C4' C5' H5'2 73.8 65.8
H4' C4' C3' O3' 303.4 297.9
H4' C4' C3' C2' 120.2 117.9
C1' C2' H2'2 H2' 125.0 236.4
C3' C2' H2'2 H2' 235.0 123.4
C1' C2' H2' H2'2 235.0 123.6
C3' C2' H2' H2'2 125.0 236.6
O4' C1' H1' N1 114.8 123.1
O4' C1' H1' C2' 241.8 246.3
H1' C1' N1 C6 177.1 356.6
H1' C1' C2' H2'2 29.5 160.0
H1' C1' C2' H2' 153.0 36.5
H42 N4 C4 C5 181.0 180.0
C4 N4 H42 H41 180.0 179.9
H41 N4 C4 C5 1.0 359.9
C4 N4 H41 H42 180.0 180.1
N1 C6 H6 C5 180.0 179.8
H6 C6 C5 CL 0.8 0.0
OP1 P OP3 O5'   240.1
OP1 P OP3 OP2   120.0
OP2 P OP3 O5'   120.0