Atom Nomenclature for 2FL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2FL

Atom Name (V3) Atom Name (V2)
C2' C8
C3' C9
C4' C10
C5' C11
C6' C12
C1' C7
O1' O6
O2' O7
O3' O8
O1 O1
O5' O9
O6' O10
C1 C1
C2 C2
F2 F1
C3 C3
O3 O2
C4 C4
O4 O3
C5 C5
O5 O4
C6 C6
O6 O5
H2' H12
H3' H13
H4' H14
H5' H15
H6'1 H16
H6'2 H17
H1' H11
HO1' H18
HO2' H19
HO3' H20
HO6' H21
H1 H1
H2 H2
H3 H3
HO3 H8
H4 H4
HO4 H9
H5 H5
H61 H6
H62 H7
HO6 H10