PDB Chemical Component 2FI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2FI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| P |
O3P |
1.611 |
1.610 |
| O3P |
HO3P |
0.950 |
0.966 |
| O1P |
P |
1.496 |
1.480 |
| O2P |
P |
1.490 |
1.610 |
| P |
O5' |
1.595 |
1.610 |
| O2P |
HO2P |
0.950 |
0.967 |
| O5' |
C5' |
1.432 |
1.429 |
| C6 |
O6 |
1.231 |
1.218 |
| C5 |
C6 |
1.439 |
1.417 |
| C6 |
N1 |
1.415 |
1.353 |
| N1 |
C2 |
1.392 |
1.357 |
| N1 |
HN1 |
1.001 |
0.969 |
| N3 |
C2 |
1.348 |
1.303 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
N3 |
1.377 |
1.340 |
| N9 |
C4 |
1.377 |
1.368 |
| C5 |
C4 |
1.401 |
1.398 |
| N7 |
C5 |
1.388 |
1.354 |
| C8 |
N7 |
1.311 |
1.302 |
| C8 |
N9 |
1.381 |
1.363 |
| C8 |
H8 |
1.080 |
1.081 |
| C1' |
N9 |
1.459 |
1.464 |
| F1' |
C2' |
1.355 |
1.400 |
| C3' |
C2' |
1.525 |
1.545 |
| C2' |
C1' |
1.520 |
1.545 |
| C2' |
H2' |
1.100 |
1.090 |
| C5' |
C4' |
1.515 |
1.531 |
| C5' |
H5' |
1.100 |
1.091 |
| C5' |
H5'A |
1.100 |
1.089 |
| C3' |
C4' |
1.530 |
1.544 |
| C4' |
O4' |
1.428 |
1.444 |
| C4' |
H4' |
1.100 |
1.090 |
| O4' |
C1' |
1.420 |
1.444 |
| C1' |
H1' |
1.100 |
1.089 |
| C3' |
O3' |
1.443 |
1.428 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.968 |
Bond Angles for 2FI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| P |
O3P |
HO3P |
109.5 |
114.0 |
| O1P |
P |
O5' |
105.8 |
109.5 |
| O2P |
P |
O5' |
107.3 |
109.5 |
| P |
O5' |
C5' |
121.0 |
123.0 |
| O5' |
C5' |
C4' |
110.9 |
109.5 |
| O5' |
C5' |
H5' |
109.0 |
109.5 |
| O5' |
C5' |
H5'A |
108.7 |
109.5 |
| C6 |
N1 |
C2 |
125.1 |
120.4 |
| C6 |
N1 |
HN1 |
117.5 |
119.8 |
| C2 |
N1 |
HN1 |
117.5 |
119.9 |
| N1 |
C2 |
H2 |
118.5 |
118.9 |
| N3 |
C2 |
H2 |
118.4 |
118.9 |
| N9 |
C8 |
H8 |
123.2 |
125.1 |
| F1' |
C2' |
C1' |
112.4 |
110.5 |
| F1' |
C2' |
H2' |
103.3 |
110.4 |
| C3' |
C2' |
H2' |
111.0 |
110.7 |
| C1' |
C2' |
H2' |
112.1 |
110.5 |
| C2' |
C1' |
O4' |
105.9 |
104.7 |
| C2' |
C1' |
H1' |
108.2 |
110.3 |
| C4' |
C5' |
H5' |
109.0 |
109.5 |
| C4' |
C5' |
H5'A |
108.7 |
109.5 |
| C5' |
C4' |
O4' |
111.2 |
110.4 |
| C5' |
C4' |
H4' |
103.3 |
110.3 |
| H5' |
C5' |
H5'A |
110.6 |
109.5 |
| C3' |
C4' |
H4' |
109.5 |
110.5 |
| O4' |
C4' |
H4' |
113.1 |
110.4 |
| C4' |
O4' |
C1' |
107.9 |
105.3 |
| O4' |
C1' |
H1' |
113.9 |
110.4 |
| O3' |
C3' |
H3' |
107.1 |
110.6 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
Torsion Angles for 2FI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1P |
P |
O3P |
HO3P |
192.5 |
180.0 |
| O2P |
P |
O1P |
O5' |
239.5 |
120.0 |
| O1P |
P |
O5' |
C5' |
93.9 |
305.0 |
| O2P |
P |
O3P |
HO3P |
60.2 |
300.0 |
| O1P |
P |
O2P |
O5' |
119.7 |
240.0 |
| O2P |
P |
O5' |
C5' |
221.5 |
185.0 |
| O5' |
P |
O3P |
HO3P |
305.1 |
60.0 |
| P |
O5' |
C5' |
C4' |
124.7 |
180.0 |
| P |
O5' |
C5' |
H5' |
244.7 |
300.0 |
| P |
O5' |
C5' |
H5'A |
5.3 |
60.0 |
| HO2P |
O2P |
P |
O5' |
239.3 |
180.0 |
| C4' |
C5' |
O5' |
H5' |
240.0 |
240.0 |
| C4' |
C5' |
O5' |
H5'A |
119.4 |
120.0 |
| O5' |
C5' |
C4' |
O4' |
279.8 |
66.4 |
| O5' |
C5' |
C4' |
H4' |
158.2 |
304.2 |
| H5' |
C5' |
O5' |
H5'A |
239.4 |
240.0 |
| C5 |
C6 |
N1 |
HN1 |
180.5 |
180.3 |
| C2 |
N1 |
C6 |
HN1 |
180.0 |
180.0 |
| C6 |
N1 |
C2 |
H2 |
179.6 |
180.0 |
| C6 |
N1 |
C2 |
HN1 |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.1 |
| C6 |
N1 |
HN1 |
C2 |
180.0 |
180.0 |
| HN1 |
N1 |
C2 |
H2 |
359.6 |
359.9 |
| N3 |
C2 |
N1 |
HN1 |
179.6 |
180.0 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
179.9 |
| H2 |
C2 |
N1 |
HN1 |
359.6 |
359.9 |
| C4 |
N3 |
C2 |
H2 |
180.5 |
180.0 |
| C1' |
N9 |
C8 |
H8 |
0.2 |
359.4 |
| C3' |
C2' |
F1' |
H2' |
120.3 |
122.8 |
| C1' |
C2' |
F1' |
H2' |
239.0 |
237.4 |
| F1' |
C2' |
C1' |
O4' |
255.9 |
265.3 |
| F1' |
C2' |
C1' |
H1' |
133.4 |
146.5 |
| F1' |
C2' |
C3' |
H2' |
244.3 |
237.3 |
| C1' |
C2' |
C3' |
H2' |
121.3 |
118.7 |
| C3' |
C2' |
C1' |
H1' |
257.1 |
265.2 |
| F1' |
C2' |
C1' |
H2' |
115.8 |
122.5 |
| C3' |
C2' |
C1' |
H2' |
239.4 |
241.2 |
| C4' |
O4' |
C1' |
C2' |
326.3 |
319.5 |
| O4' |
C1' |
C2' |
H1' |
122.5 |
118.8 |
| F1' |
C2' |
H2' |
C1' |
238.8 |
237.4 |
| H2' |
C2' |
C1' |
O4' |
140.1 |
142.8 |
| H2' |
C2' |
C1' |
H1' |
17.6 |
24.0 |
| O5' |
C5' |
C4' |
H5' |
120.0 |
120.0 |
| O5' |
C5' |
C4' |
H5'A |
240.6 |
240.0 |
| H5' |
C5' |
C4' |
H5'A |
120.6 |
120.0 |
| C3' |
C4' |
C5' |
H4' |
240.9 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
121.6 |
122.2 |
| C5' |
C4' |
O4' |
C1' |
158.4 |
159.4 |
| O5' |
C5' |
H5' |
C4' |
238.9 |
240.0 |
| O5' |
C5' |
H5' |
H5'A |
119.4 |
120.0 |
| C4' |
C5' |
H5' |
H5'A |
240.5 |
240.0 |
| H5' |
C5' |
C4' |
O4' |
159.8 |
306.5 |
| H5' |
C5' |
C4' |
H4' |
38.2 |
184.2 |
| O5' |
C5' |
H5'A |
C4' |
120.8 |
120.0 |
| O5' |
C5' |
H5'A |
H5' |
240.4 |
240.0 |
| C4' |
C5' |
H5'A |
H5' |
119.6 |
120.0 |
| H5'A |
C5' |
C4' |
O4' |
39.2 |
186.5 |
| H5'A |
C5' |
C4' |
H4' |
277.6 |
64.2 |
| C4' |
C3' |
C2' |
H2' |
239.0 |
241.3 |
| C3' |
C4' |
C5' |
H5' |
279.1 |
61.9 |
| C3' |
C4' |
C5' |
H5'A |
158.5 |
301.9 |
| C5' |
C4' |
C3' |
H4' |
115.6 |
122.2 |
| O4' |
C4' |
C3' |
H4' |
238.1 |
241.1 |
| C2' |
C1' |
O4' |
C4' |
326.3 |
319.5 |
| O4' |
C4' |
C5' |
H5' |
159.8 |
306.5 |
| O4' |
C4' |
C5' |
H5'A |
39.2 |
186.5 |
| C5' |
C4' |
O4' |
H4' |
244.3 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
119.5 |
119.0 |
| C4' |
O4' |
C1' |
H1' |
85.2 |
78.2 |
| H4' |
C4' |
C5' |
H5' |
38.2 |
184.2 |
| H4' |
C4' |
C5' |
H5'A |
277.6 |
64.2 |
| C5' |
C4' |
H4' |
O4' |
120.4 |
122.2 |
| H4' |
C4' |
O4' |
C1' |
274.1 |
281.6 |
| O4' |
C1' |
C2' |
H2' |
140.1 |
142.8 |
| C2' |
C1' |
O4' |
H1' |
241.2 |
241.3 |
| C1' |
O4' |
C4' |
H4' |
274.1 |
281.6 |
| H1' |
C1' |
C2' |
H2' |
17.6 |
24.0 |
| C2' |
C1' |
H1' |
O4' |
117.5 |
115.3 |
| O3' |
C3' |
C2' |
H2' |
358.9 |
359.9 |
| O3' |
C3' |
C4' |
H4' |
345.0 |
336.3 |
| H3' |
C3' |
C2' |
H2' |
118.1 |
122.7 |
| H3' |
C3' |
C4' |
H4' |
225.6 |
213.5 |
| H3' |
C3' |
O3' |
HO3' |
8.8 |
298.8 |
| HO3' |
O3' |
C3' |
H3' |
8.8 |
298.8 |