data_2FI
# 
_chem_comp.id                                    2FI 
_chem_comp.name                                  "2'-fluoro-2'-deoxyinosine" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H12 F N4 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-1,9-dihydro-6H-purin-6-one" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-04-28 
_chem_comp.pdbx_modified_date                    2020-06-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        350.197 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     2FI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3CWS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2FI O3P    O3P    O 0 1 N Y N 35.762 -9.252  6.064  4.675  -1.821 1.173  O3P    2FI 1  
2FI P      P      P 0 1 N N N 36.360 -10.114 4.841  4.857  -0.941 -0.163 P      2FI 2  
2FI O1P    O1P    O 0 1 N N N 36.825 -9.181  3.768  5.885  0.098  0.067  O1P    2FI 3  
2FI O2P    O2P    O 0 1 N N N 35.433 -11.221 4.473  5.320  -1.895 -1.374 O2P    2FI 4  
2FI "O5'"  "O5'"  O 0 1 N N N 37.680 -10.779 5.440  3.458  -0.239 -0.538 "O5'"  2FI 5  
2FI O6     O6     O 0 1 N N N 32.245 -15.028 11.340 -5.735 -2.194 0.628  O6     2FI 6  
2FI C6     C6     C 0 1 N N N 33.452 -14.789 11.293 -5.139 -1.282 0.083  C6     2FI 7  
2FI N1     N1     N 0 1 N N N 34.308 -15.276 12.309 -5.794 -0.391 -0.696 N1     2FI 8  
2FI C2     C2     C 0 1 N N N 35.684 -15.070 12.363 -5.119 0.620  -1.298 C2     2FI 9  
2FI N3     N3     N 0 1 N N N 36.361 -14.376 11.427 -3.833 0.777  -1.158 N3     2FI 10 
2FI C4     C4     C 0 1 Y N N 35.548 -13.888 10.428 -3.108 -0.061 -0.404 C4     2FI 11 
2FI C5     C5     C 0 1 Y N N 34.163 -14.047 10.285 -3.741 -1.122 0.251  C5     2FI 12 
2FI N7     N7     N 0 1 Y N N 33.706 -13.408 9.141  -2.789 -1.796 0.938  N7     2FI 13 
2FI C8     C8     C 0 1 Y N N 34.788 -12.892 8.611  -1.636 -1.220 0.753  C8     2FI 14 
2FI N9     N9     N 0 1 Y N N 35.936 -13.144 9.336  -1.783 -0.149 -0.077 N9     2FI 15 
2FI "F1'"  "F1'"  F 0 1 N N N 37.239 -14.456 7.393  -1.190 1.717  1.645  "F1'"  2FI 16 
2FI "C2'"  "C2'"  C 0 1 N N S 38.058 -13.619 8.075  -0.652 2.000  0.384  "C2'"  2FI 17 
2FI "C5'"  "C5'"  C 0 1 N N N 38.327 -10.226 6.592  2.836  0.747  0.289  "C5'"  2FI 18 
2FI "C4'"  "C4'"  C 0 1 N N R 38.478 -11.270 7.679  1.526  1.203  -0.358 "C4'"  2FI 19 
2FI "O4'"  "O4'"  O 0 1 N N N 37.261 -11.437 8.408  0.571  0.120  -0.377 "O4'"  2FI 20 
2FI "C1'"  "C1'"  C 0 1 N N R 37.296 -12.714 9.029  -0.719 0.752  -0.525 "C1'"  2FI 21 
2FI "C3'"  "C3'"  C 0 1 N N R 38.840 -12.668 7.175  0.859  2.303  0.496  "C3'"  2FI 22 
2FI "O3'"  "O3'"  O 0 1 N N N 40.245 -12.959 7.330  1.151  3.596  -0.036 "O3'"  2FI 23 
2FI HO3P   HO3P   H 0 0 N Y N 35.644 -9.814  6.821  4.016  -2.523 1.095  HO3P   2FI 24 
2FI HO2P   HO2P   H 0 0 N N N 35.236 -11.174 3.545  6.158  -2.352 -1.217 HO2P   2FI 25 
2FI HN1    HN1    H 0 1 N N N 33.892 -15.810 13.046 -6.751 -0.476 -0.824 HN1    2FI 26 
2FI H2     H2     H 0 1 N N N 36.235 -15.486 13.194 -5.666 1.317  -1.915 H2     2FI 27 
2FI H8     H8     H 0 1 N N N 34.782 -12.323 7.693  -0.701 -1.549 1.184  H8     2FI 28 
2FI "H2'"  "H2'"  H 0 1 N N N 38.734 -14.305 8.606  -1.179 2.836  -0.076 "H2'"  2FI 29 
2FI "H5'"  "H5'"  H 0 1 N N N 39.324 -9.863  6.303  2.627  0.319  1.270  "H5'"  2FI 30 
2FI "H5'A" "H5'A" H 0 0 N N N 37.712 -9.400  6.979  3.503  1.601  0.400  "H5'A" 2FI 31 
2FI "H4'"  "H4'"  H 0 1 N N N 39.300 -10.877 8.296  1.710  1.565  -1.370 "H4'"  2FI 32 
2FI "H1'"  "H1'"  H 0 1 N N N 37.813 -12.724 10.000 -0.881 1.047  -1.561 "H1'"  2FI 33 
2FI "H3'"  "H3'"  H 0 1 N N N 38.606 -12.761 6.104  1.186  2.232  1.533  "H3'"  2FI 34 
2FI "HO3'" "HO3'" H 0 0 N N N 40.652 -13.023 6.474  0.708  4.321  0.427  "HO3'" 2FI 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2FI P     O3P    SING N N 1  
2FI O3P   HO3P   SING N N 2  
2FI O1P   P      DOUB N N 3  
2FI O2P   P      SING N N 4  
2FI P     "O5'"  SING N N 5  
2FI O2P   HO2P   SING N N 6  
2FI "O5'" "C5'"  SING N N 7  
2FI C6    O6     DOUB N N 8  
2FI C5    C6     SING N N 9  
2FI C6    N1     SING N N 10 
2FI N1    C2     SING N N 11 
2FI N1    HN1    SING N N 12 
2FI N3    C2     DOUB N N 13 
2FI C2    H2     SING N N 14 
2FI C4    N3     SING N N 15 
2FI N9    C4     SING Y N 16 
2FI C5    C4     DOUB Y N 17 
2FI N7    C5     SING Y N 18 
2FI C8    N7     DOUB Y N 19 
2FI C8    N9     SING Y N 20 
2FI C8    H8     SING N N 21 
2FI "C1'" N9     SING N N 22 
2FI "F1'" "C2'"  SING N N 23 
2FI "C3'" "C2'"  SING N N 24 
2FI "C2'" "C1'"  SING N N 25 
2FI "C2'" "H2'"  SING N N 26 
2FI "C5'" "C4'"  SING N N 27 
2FI "C5'" "H5'"  SING N N 28 
2FI "C5'" "H5'A" SING N N 29 
2FI "C3'" "C4'"  SING N N 30 
2FI "C4'" "O4'"  SING N N 31 
2FI "C4'" "H4'"  SING N N 32 
2FI "O4'" "C1'"  SING N N 33 
2FI "C1'" "H1'"  SING N N 34 
2FI "C3'" "O3'"  SING N N 35 
2FI "C3'" "H3'"  SING N N 36 
2FI "O3'" "HO3'" SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2FI SMILES           ACDLabs              10.04 "O=C1c2ncn(c2N=CN1)C3OC(C(O)C3F)COP(=O)(O)O"                                                                                                                
2FI SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@H](F)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)NC=Nc23"                                                                                            
2FI SMILES           CACTVS               3.341 "O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC=Nc23"                                                                                                  
2FI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)F)N=CNC2=O"                                                                                             
2FI SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)O)O)F)N=CNC2=O"                                                                                                              
2FI InChI            InChI                1.03  "InChI=1S/C10H12FN4O7P/c11-5-7(16)4(1-21-23(18,19)20)22-10(5)15-3-14-6-8(15)12-2-13-9(6)17/h2-5,7,10,16H,1H2,(H,12,13,17)(H2,18,19,20)/t4-,5+,7-,10-/m1/s1" 
2FI InChIKey         InChI                1.03  HMMSHEYLIDBUMQ-GQTRHBFLSA-N                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2FI "SYSTEMATIC NAME" ACDLabs              10.04 "9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-1,9-dihydro-6H-purin-6-one"            
2FI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5R)-4-fluoro-3-hydroxy-5-(6-oxo-1H-purin-9-yl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      2FI 
_pdbx_chem_comp_synonyms.name         "9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-1,9-dihydro-6H-purin-6-one" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2FI "Create component"     2008-04-28 RCSB 
2FI "Modify aromatic_flag" 2011-06-04 RCSB 
2FI "Modify descriptor"    2011-06-04 RCSB 
2FI "Modify synonyms"      2020-06-05 PDBE 
# 
