PDB Chemical Component 2FA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2FA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5' |
C5' |
1.446 |
1.428 |
| O5' |
H5' |
0.950 |
0.968 |
| C5' |
C4' |
1.535 |
1.529 |
| C5' |
H5'1 |
1.115 |
1.091 |
| C5' |
H5'2 |
1.115 |
1.090 |
| C4' |
O4' |
1.465 |
1.444 |
| C4' |
C3' |
1.538 |
1.546 |
| C4' |
H4' |
1.115 |
1.090 |
| O4' |
C1' |
1.430 |
1.444 |
| C1' |
N9 |
1.504 |
1.465 |
| C1' |
C2' |
1.573 |
1.545 |
| C1' |
H1' |
1.115 |
1.090 |
| N9 |
C4 |
1.418 |
1.372 |
| N9 |
C8 |
1.348 |
1.364 |
| C4 |
N3 |
1.379 |
1.329 |
| C4 |
C5 |
1.381 |
1.405 |
| N3 |
C2 |
1.351 |
1.319 |
| C2 |
F |
1.307 |
1.351 |
| C2 |
N1 |
1.345 |
1.323 |
| N1 |
C6 |
1.353 |
1.329 |
| C6 |
N6 |
1.315 |
1.384 |
| C6 |
C5 |
1.408 |
1.405 |
| N6 |
HN61 |
1.020 |
0.970 |
| N6 |
HN62 |
1.020 |
0.970 |
| C5 |
N7 |
1.385 |
1.356 |
| N7 |
C8 |
1.303 |
1.301 |
| C8 |
H8 |
1.103 |
1.080 |
| C2' |
O2' |
1.464 |
1.429 |
| C2' |
C3' |
1.566 |
1.547 |
| C2' |
H2' |
1.115 |
1.091 |
| O2' |
H1 |
0.949 |
0.967 |
| C3' |
O3' |
1.419 |
1.429 |
| C3' |
H3' |
1.115 |
1.090 |
| O3' |
H2 |
0.950 |
0.967 |
Bond Angles for 2FA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5' |
O5' |
H5' |
112.6 |
106.8 |
| O5' |
C5' |
C4' |
112.5 |
109.5 |
| O5' |
C5' |
H5'1 |
111.1 |
109.4 |
| O5' |
C5' |
H5'2 |
111.1 |
109.5 |
| C4' |
C5' |
H5'1 |
111.1 |
109.5 |
| C4' |
C5' |
H5'2 |
111.1 |
109.5 |
| C5' |
C4' |
O4' |
114.5 |
110.4 |
| C5' |
C4' |
C3' |
115.5 |
110.5 |
| C5' |
C4' |
H4' |
99.9 |
110.4 |
| H5'1 |
C5' |
H5'2 |
99.3 |
109.4 |
| O4' |
C4' |
C3' |
104.2 |
104.8 |
| O4' |
C4' |
H4' |
112.0 |
110.4 |
| C4' |
O4' |
C1' |
110.1 |
105.3 |
| C3' |
C4' |
H4' |
111.0 |
110.3 |
| C4' |
C3' |
C2' |
103.0 |
104.1 |
| C4' |
C3' |
O3' |
107.9 |
110.5 |
| C4' |
C3' |
H3' |
115.2 |
110.5 |
| O4' |
C1' |
N9 |
108.4 |
110.4 |
| O4' |
C1' |
C2' |
105.8 |
104.9 |
| O4' |
C1' |
H1' |
115.9 |
110.4 |
| N9 |
C1' |
C2' |
117.8 |
110.4 |
| N9 |
C1' |
H1' |
103.4 |
110.3 |
| C1' |
N9 |
C4 |
132.2 |
126.3 |
| C1' |
N9 |
C8 |
124.6 |
126.3 |
| C2' |
C1' |
H1' |
106.0 |
110.3 |
| C1' |
C2' |
O2' |
115.3 |
110.8 |
| C1' |
C2' |
C3' |
104.9 |
104.0 |
| C1' |
C2' |
H2' |
111.4 |
110.4 |
| C4 |
N9 |
C8 |
103.2 |
107.5 |
| N9 |
C4 |
N3 |
128.9 |
134.9 |
| N9 |
C4 |
C5 |
105.7 |
106.0 |
| N9 |
C8 |
N7 |
117.2 |
110.0 |
| N9 |
C8 |
H8 |
123.0 |
125.0 |
| N3 |
C4 |
C5 |
125.4 |
119.1 |
| C4 |
N3 |
C2 |
112.4 |
120.6 |
| C4 |
C5 |
C6 |
116.6 |
118.2 |
| C4 |
C5 |
N7 |
111.0 |
107.1 |
| N3 |
C2 |
F |
118.6 |
118.8 |
| N3 |
C2 |
N1 |
127.3 |
122.4 |
| F |
C2 |
N1 |
114.2 |
118.8 |
| C2 |
N1 |
C6 |
118.7 |
121.2 |
| N1 |
C6 |
N6 |
118.9 |
120.8 |
| N1 |
C6 |
C5 |
119.7 |
118.5 |
| N6 |
C6 |
C5 |
121.4 |
120.8 |
| C6 |
N6 |
HN61 |
108.8 |
120.0 |
| C6 |
N6 |
HN62 |
118.9 |
120.0 |
| C6 |
C5 |
N7 |
132.3 |
134.6 |
| HN61 |
N6 |
HN62 |
108.8 |
120.0 |
| C5 |
N7 |
C8 |
102.8 |
109.4 |
| N7 |
C8 |
H8 |
119.8 |
125.0 |
| O2' |
C2' |
C3' |
116.3 |
110.5 |
| O2' |
C2' |
H2' |
98.6 |
110.5 |
| C2' |
O2' |
H1 |
115.3 |
106.8 |
| C3' |
C2' |
H2' |
110.3 |
110.5 |
| C2' |
C3' |
O3' |
111.4 |
110.5 |
| C2' |
C3' |
H3' |
111.9 |
110.6 |
| O3' |
C3' |
H3' |
107.4 |
110.5 |
| C3' |
O3' |
H2 |
107.9 |
106.8 |
Torsion Angles for 2FA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4' |
C5' |
O5' |
H5'1 |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
H5'2 |
234.8 |
239.9 |
| O5' |
C5' |
C4' |
O4' |
58.1 |
66.5 |
| O5' |
C5' |
C4' |
C3' |
179.2 |
181.9 |
| O5' |
C5' |
C4' |
H4' |
298.3 |
304.2 |
| H5'1 |
C5' |
O5' |
H5'2 |
109.5 |
120.0 |
| H5' |
O5' |
C5' |
C4' |
180.0 |
180.0 |
| H5' |
O5' |
C5' |
H5'1 |
54.7 |
60.0 |
| H5' |
O5' |
C5' |
H5'2 |
305.2 |
300.1 |
| C4' |
C5' |
O5' |
H5' |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H5'1 |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
H5'2 |
125.2 |
120.1 |
| H5'1 |
C5' |
C4' |
H5'2 |
250.5 |
240.1 |
| O4' |
C4' |
C5' |
C3' |
238.9 |
244.6 |
| O4' |
C4' |
C5' |
H4' |
119.9 |
122.3 |
| C5' |
C4' |
O4' |
C1' |
92.1 |
159.5 |
| C3' |
C4' |
C5' |
H4' |
240.9 |
237.7 |
| C5' |
C4' |
C3' |
C2' |
265.8 |
217.1 |
| C5' |
C4' |
C3' |
O3' |
148.0 |
98.4 |
| C5' |
C4' |
C3' |
H3' |
28.0 |
335.8 |
| H5'1 |
C5' |
O5' |
H5' |
54.7 |
60.0 |
| O5' |
C5' |
H5'1 |
C4' |
126.1 |
120.0 |
| O5' |
C5' |
H5'1 |
H5'2 |
243.0 |
240.0 |
| C4' |
C5' |
H5'1 |
H5'2 |
116.9 |
120.0 |
| H5'1 |
C5' |
C4' |
O4' |
183.4 |
186.5 |
| H5'1 |
C5' |
C4' |
C3' |
304.5 |
301.9 |
| H5'1 |
C5' |
C4' |
H4' |
63.5 |
64.2 |
| H5'2 |
C5' |
O5' |
H5' |
305.2 |
300.1 |
| O5' |
C5' |
H5'2 |
C4' |
234.0 |
239.9 |
| O5' |
C5' |
H5'2 |
H5'1 |
117.0 |
120.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
243.0 |
240.0 |
| H5'2 |
C5' |
C4' |
O4' |
292.9 |
306.4 |
| H5'2 |
C5' |
C4' |
C3' |
54.0 |
61.8 |
| H5'2 |
C5' |
C4' |
H4' |
173.0 |
184.1 |
| O4' |
C4' |
C5' |
H5'1 |
183.4 |
186.5 |
| O4' |
C4' |
C5' |
H5'2 |
292.9 |
306.4 |
| C5' |
C4' |
O4' |
C3' |
127.1 |
118.9 |
| C5' |
C4' |
O4' |
H4' |
247.2 |
237.7 |
| C3' |
C4' |
O4' |
H4' |
120.1 |
118.8 |
| O4' |
C4' |
C3' |
C2' |
32.3 |
335.9 |
| O4' |
C4' |
C3' |
O3' |
274.5 |
217.3 |
| O4' |
C4' |
C3' |
H3' |
154.5 |
94.7 |
| C4' |
O4' |
C1' |
N9 |
254.7 |
200.6 |
| C4' |
O4' |
C1' |
C2' |
21.9 |
319.5 |
| C4' |
O4' |
C1' |
H1' |
139.0 |
78.4 |
| C3' |
C4' |
C5' |
H5'1 |
304.5 |
301.9 |
| C3' |
C4' |
C5' |
H5'2 |
54.0 |
61.8 |
| C5' |
C4' |
C3' |
O4' |
233.5 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
112.7 |
122.3 |
| O4' |
C4' |
C3' |
H4' |
239.2 |
241.2 |
| C3' |
C4' |
O4' |
C1' |
325.0 |
40.5 |
| C1' |
C2' |
C3' |
C4' |
340.5 |
0.2 |
| O2' |
C2' |
C3' |
C4' |
211.7 |
241.2 |
| C4' |
C3' |
C2' |
H2' |
100.5 |
118.6 |
| C2' |
C3' |
C4' |
O3' |
117.9 |
118.7 |
| C2' |
C3' |
C4' |
H3' |
237.8 |
241.2 |
| O3' |
C3' |
C4' |
H3' |
119.9 |
122.6 |
| C4' |
C3' |
O3' |
H2 |
180.0 |
298.5 |
| H4' |
C4' |
C5' |
H5'1 |
63.5 |
64.2 |
| H4' |
C4' |
C5' |
H5'2 |
173.0 |
184.1 |
| C5' |
C4' |
H4' |
O4' |
121.6 |
122.3 |
| C5' |
C4' |
H4' |
C3' |
237.7 |
237.6 |
| O4' |
C4' |
H4' |
C3' |
116.0 |
115.3 |
| H4' |
C4' |
O4' |
C1' |
204.9 |
281.7 |
| H4' |
C4' |
C3' |
C2' |
153.1 |
94.7 |
| H4' |
C4' |
C3' |
O3' |
35.2 |
336.1 |
| H4' |
C4' |
C3' |
H3' |
275.3 |
213.5 |
| C1' |
O4' |
C4' |
C3' |
325.0 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
204.9 |
281.7 |
| N9 |
C1' |
O4' |
C2' |
232.8 |
241.1 |
| N9 |
C1' |
O4' |
H1' |
115.6 |
122.2 |
| O4' |
C1' |
N9 |
C4 |
106.4 |
202.0 |
| O4' |
C1' |
N9 |
C8 |
286.7 |
22.1 |
| C2' |
C1' |
O4' |
H1' |
242.8 |
241.1 |
| O4' |
C1' |
C2' |
O2' |
129.1 |
142.6 |
| O4' |
C1' |
C2' |
C3' |
359.7 |
23.8 |
| O4' |
C1' |
C2' |
H2' |
240.4 |
265.3 |
| O4' |
C1' |
N9 |
C2' |
120.0 |
115.5 |
| O4' |
C1' |
N9 |
H1' |
236.5 |
237.7 |
| C2' |
C1' |
N9 |
H1' |
116.5 |
122.2 |
| N9 |
C1' |
C2' |
O2' |
250.4 |
261.5 |
| N9 |
C1' |
C2' |
C3' |
121.0 |
142.7 |
| N9 |
C1' |
C2' |
H2' |
1.7 |
24.2 |
| C4 |
N9 |
C1' |
C8 |
179.7 |
179.9 |
| C1' |
N9 |
C4 |
N3 |
0.3 |
0.1 |
| C1' |
N9 |
C4 |
C5 |
180.4 |
180.3 |
| C1' |
N9 |
C8 |
N7 |
179.7 |
180.0 |
| C1' |
N9 |
C8 |
H8 |
359.7 |
359.9 |
| C4' |
C3' |
C2' |
C1' |
340.5 |
0.2 |
| O4' |
C1' |
C2' |
N9 |
238.7 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
123.6 |
118.9 |
| N9 |
C1' |
C2' |
H1' |
244.9 |
237.8 |
| C2' |
C1' |
N9 |
C4 |
346.4 |
86.5 |
| C2' |
C1' |
N9 |
C8 |
166.7 |
266.6 |
| O2' |
C2' |
C1' |
C3' |
129.4 |
118.8 |
| O2' |
C2' |
C1' |
H2' |
248.7 |
237.3 |
| C1' |
C2' |
O2' |
H1 |
180.0 |
183.8 |
| C3' |
C2' |
C1' |
H2' |
119.3 |
118.5 |
| C1' |
C2' |
C3' |
O3' |
95.8 |
118.8 |
| C1' |
C2' |
C3' |
H3' |
216.1 |
241.5 |
| O4' |
C1' |
H1' |
N9 |
118.4 |
122.3 |
| O4' |
C1' |
H1' |
C2' |
243.0 |
244.5 |
| N9 |
C1' |
H1' |
C2' |
124.6 |
122.2 |
| H1' |
C1' |
N9 |
C4 |
229.9 |
324.3 |
| H1' |
C1' |
N9 |
C8 |
50.2 |
144.4 |
| H1' |
C1' |
C2' |
O2' |
5.5 |
23.6 |
| H1' |
C1' |
C2' |
C3' |
236.1 |
264.9 |
| H1' |
C1' |
C2' |
H2' |
116.8 |
146.4 |
| C4 |
N9 |
C1' |
C2' |
346.4 |
86.5 |
| C4 |
N9 |
C1' |
H1' |
229.9 |
324.3 |
| C1' |
N9 |
C4 |
C8 |
180.2 |
180.1 |
| C4 |
N9 |
C8 |
N7 |
359.9 |
0.1 |
| C4 |
N9 |
C8 |
H8 |
179.9 |
179.9 |
| N3 |
C4 |
N9 |
C5 |
179.9 |
179.8 |
| N9 |
C4 |
N3 |
C2 |
180.1 |
180.0 |
| N9 |
C4 |
C5 |
C6 |
179.9 |
180.3 |
| N9 |
C4 |
C5 |
N7 |
359.9 |
359.6 |
| C8 |
N9 |
C1' |
C2' |
166.7 |
266.6 |
| C8 |
N9 |
C1' |
H1' |
50.2 |
144.4 |
| C1' |
N9 |
C8 |
C4 |
179.8 |
179.9 |
| C8 |
N9 |
C4 |
N3 |
180.0 |
180.0 |
| C8 |
N9 |
C4 |
C5 |
0.1 |
0.2 |
| C5 |
N7 |
C8 |
N9 |
360.0 |
359.7 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.1 |
| N3 |
C4 |
N9 |
C8 |
180.0 |
180.0 |
| N9 |
C4 |
N3 |
C5 |
180.1 |
180.2 |
| N3 |
C4 |
C5 |
C6 |
360.0 |
0.5 |
| N3 |
C4 |
C5 |
N7 |
179.9 |
179.8 |
| C4 |
N3 |
C2 |
F |
179.8 |
180.0 |
| C4 |
N3 |
C2 |
N1 |
0.0 |
359.9 |
| C5 |
C4 |
N9 |
C8 |
0.1 |
0.2 |
| N9 |
C4 |
C5 |
N3 |
179.9 |
179.8 |
| C5 |
C4 |
N3 |
C2 |
360.0 |
359.8 |
| N1 |
C6 |
C5 |
C4 |
0.0 |
359.5 |
| N6 |
C6 |
C5 |
C4 |
180.0 |
179.8 |
| C6 |
C5 |
C4 |
N7 |
180.0 |
180.7 |
| C4 |
C5 |
N7 |
C8 |
0.1 |
0.4 |
| C2 |
N3 |
C4 |
C5 |
360.0 |
359.8 |
| F |
C2 |
N3 |
N1 |
179.8 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
0.0 |
0.0 |
| N3 |
C2 |
F |
N1 |
180.1 |
180.0 |
| F |
C2 |
N1 |
C6 |
180.2 |
180.0 |
| N3 |
C2 |
N1 |
F |
179.8 |
180.0 |
| C2 |
N1 |
C6 |
N6 |
180.0 |
179.9 |
| C2 |
N1 |
C6 |
C5 |
360.0 |
0.3 |
| C4 |
C5 |
C6 |
N1 |
0.0 |
359.5 |
| N6 |
C6 |
N1 |
C5 |
180.0 |
179.7 |
| N1 |
C6 |
N6 |
HN61 |
54.7 |
360.0 |
| N1 |
C6 |
N6 |
HN62 |
180.0 |
179.8 |
| N1 |
C6 |
C5 |
N7 |
180.1 |
180.4 |
| C4 |
C5 |
C6 |
N6 |
180.0 |
179.8 |
| N1 |
C6 |
N6 |
C5 |
180.0 |
180.3 |
| N6 |
C6 |
C5 |
N7 |
0.1 |
0.7 |
| HN61 |
N6 |
C6 |
HN62 |
234.7 |
180.2 |
| C4 |
C5 |
C6 |
N7 |
179.9 |
179.1 |
| N1 |
C6 |
C5 |
N6 |
180.0 |
179.7 |
| C5 |
C6 |
N6 |
HN61 |
234.8 |
179.7 |
| C5 |
C6 |
N6 |
HN62 |
0.0 |
359.4 |
| C6 |
C5 |
N7 |
C8 |
180.0 |
179.6 |
| HN61 |
N6 |
C6 |
C5 |
234.8 |
179.7 |
| C6 |
N6 |
HN61 |
HN62 |
131.0 |
179.8 |
| HN62 |
N6 |
C6 |
C5 |
0.0 |
359.4 |
| C6 |
N6 |
HN62 |
HN61 |
234.8 |
180.2 |
| N9 |
C8 |
N7 |
C5 |
360.0 |
359.7 |
| C4 |
C5 |
N7 |
C6 |
180.1 |
180.9 |
| C5 |
N7 |
C8 |
H8 |
180.0 |
179.8 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
179.9 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
180.1 |
| C4' |
C3' |
C2' |
O2' |
211.7 |
241.2 |
| O2' |
C2' |
C1' |
H1' |
5.5 |
23.6 |
| C1' |
C2' |
O2' |
C3' |
236.4 |
245.3 |
| C1' |
C2' |
O2' |
H2' |
118.7 |
122.7 |
| C3' |
C2' |
O2' |
H2' |
242.2 |
237.4 |
| O2' |
C2' |
C3' |
O3' |
327.0 |
359.8 |
| O2' |
C2' |
C3' |
H3' |
87.3 |
122.5 |
| C2' |
C3' |
C4' |
H4' |
153.1 |
94.7 |
| C4' |
C3' |
C2' |
O3' |
244.6 |
241.4 |
| C4' |
C3' |
C2' |
H3' |
124.4 |
118.7 |
| C3' |
C2' |
C1' |
H1' |
236.1 |
264.9 |
| C1' |
C2' |
C3' |
O2' |
128.8 |
119.0 |
| C1' |
C2' |
C3' |
H2' |
239.9 |
241.5 |
| O2' |
C2' |
C3' |
H2' |
111.1 |
122.6 |
| C3' |
C2' |
O2' |
H1 |
303.6 |
298.6 |
| O3' |
C3' |
C2' |
H3' |
239.8 |
237.3 |
| C2' |
C3' |
O3' |
H2 |
67.7 |
183.9 |
| H2' |
C2' |
C1' |
H1' |
116.8 |
146.4 |
| C1' |
C2' |
H2' |
O2' |
238.4 |
237.1 |
| C1' |
C2' |
H2' |
C3' |
116.1 |
114.5 |
| O2' |
C2' |
H2' |
C3' |
237.7 |
237.4 |
| H2' |
C2' |
O2' |
H1 |
61.3 |
61.1 |
| H2' |
C2' |
C3' |
O3' |
215.9 |
237.3 |
| H2' |
C2' |
C3' |
H3' |
336.2 |
360.0 |
| H1 |
O2' |
C2' |
C3' |
303.6 |
298.6 |
| H1 |
O2' |
C2' |
H2' |
61.3 |
61.1 |
| O3' |
C3' |
C4' |
H4' |
35.2 |
336.1 |
| C4' |
C3' |
O3' |
C2' |
112.3 |
114.6 |
| C4' |
C3' |
O3' |
H3' |
235.2 |
237.4 |
| O3' |
C3' |
C2' |
H2' |
215.9 |
237.3 |
| C2' |
C3' |
O3' |
H3' |
122.9 |
122.8 |
| H3' |
C3' |
C4' |
H4' |
275.3 |
213.5 |
| C4' |
C3' |
H3' |
C2' |
242.7 |
245.3 |
| C4' |
C3' |
H3' |
O3' |
120.2 |
122.6 |
| H3' |
C3' |
C2' |
H2' |
336.2 |
360.0 |
| C2' |
C3' |
H3' |
O3' |
237.5 |
237.3 |
| H3' |
C3' |
O3' |
H2 |
304.8 |
61.1 |
| H2 |
O3' |
C3' |
H3' |
304.8 |
61.1 |