PDB Chemical Component 2DL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2DL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.399	1.394
C1	C6	1.403	1.387
C1	O7	1.363	1.358
C2	C3	1.376	1.381
C2	O16	1.371	1.360
C3	C4	1.387	1.398
C4	C5	1.399	1.396
C4	C14	1.491	1.476
C5	C6	1.383	1.379
C9	C10	1.513	1.530
C10	N3	1.477	1.465
C12	C13	1.518	1.530
C12	N3	1.462	1.465
C14	O15	1.210	1.216
C14	N3	1.366	1.347
O16	C15	1.452	1.429
C6	H6	1.080	1.080
O7	H7	0.950	0.967
C3	H3	1.081	1.080
C5	H5	1.080	1.080
C9	H91C	1.100	1.091
C9	H92C	1.100	1.090
C9	H93C	1.100	1.089
C10	H101	1.100	1.090
C10	H102	1.100	1.090
C12	H121	1.100	1.090
C12	H122	1.100	1.091
C13	H131	1.100	1.090
C13	H132	1.101	1.090
C13	H133	1.099	1.090
C15	H151	1.100	1.091
C15	H152	1.100	1.090
C15	H153	1.100	1.090

Bond Angles for 2DL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	119.6	120.2
C2	C1	O7	119.5	119.9
C1	C2	C3	119.5	120.0
C1	C2	O16	116.8	120.0
C6	C1	O7	120.9	119.9
C1	C6	C5	120.2	120.1
C1	C6	H6	119.9	120.0
C1	O7	H7	109.5	114.0
C3	C2	O16	123.6	120.0
C2	C3	C4	121.4	119.8
C2	C3	H3	119.3	120.0
C2	O16	C15	117.3	117.0
C3	C4	C5	119.3	119.9
C3	C4	C14	119.5	120.1
C4	C3	H3	119.3	120.1
C5	C4	C14	121.3	120.0
C4	C5	C6	120.0	120.0
C4	C5	H5	120.0	120.0
C4	C14	O15	119.6	120.0
C4	C14	N3	117.4	120.0
C5	C6	H6	119.9	119.9
C6	C5	H5	120.0	120.0
C9	C10	N3	112.4	109.4
C10	C9	H91C	109.5	109.4
C10	C9	H92C	109.5	109.5
C10	C9	H93C	109.5	109.5
C9	C10	H101	108.5	109.5
C9	C10	H102	107.8	109.5
C10	N3	C12	116.1	120.0
C10	N3	C14	121.1	120.0
N3	C10	H101	108.5	109.4
N3	C10	H102	107.8	109.5
C13	C12	N3	111.8	109.5
C13	C12	H121	108.7	109.5
C13	C12	H122	108.2	109.4
C12	C13	H131	109.5	109.4
C12	C13	H132	109.5	109.5
C12	C13	H133	109.4	109.5
C12	N3	C14	122.1	120.0
N3	C12	H121	108.7	109.5
N3	C12	H122	108.2	109.5
O15	C14	N3	122.9	120.0
O16	C15	H151	109.5	109.5
O16	C15	H152	109.5	109.4
O16	C15	H153	109.5	109.5
H91C	C9	H92C	109.4	109.5
H91C	C9	H93C	109.4	109.5
H92C	C9	H93C	109.5	109.5
H101	C10	H102	111.8	109.5
H121	C12	H122	111.3	109.5
H131	C13	H132	109.5	109.5
H131	C13	H133	109.5	109.4
H132	C13	H133	109.5	109.6
H151	C15	H152	109.4	109.4
H151	C15	H153	109.5	109.5
H152	C15	H153	109.5	109.5

Torsion Angles for 2DL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	O7	179.5	180.3
C2	C1	C6	C5	359.5	360.0
C2	C1	C6	H6	179.5	180.0
C2	C1	O7	H7	277.2	90.0
C3	C2	C1	O16	181.3	180.1
C1	C2	C3	C4	358.8	359.9
C1	C2	C3	H3	178.9	180.0
C1	C2	O16	C15	213.1	180.0
C2	C1	C6	O7	180.5	179.7
C6	C1	C2	C3	1.0	0.0
C6	C1	C2	O16	179.7	180.0
C6	C1	O7	H7	97.7	269.7
C4	C5	C6	C1	0.2	0.0
C5	C6	C1	H6	180.0	180.0
C1	C6	C5	H5	180.1	180.1
C2	C1	O7	C6	179.5	180.3
O7	C1	C2	C3	181.5	179.8
O7	C1	C2	O16	0.2	359.7
O7	C1	C6	C5	179.0	180.2
O7	C1	C6	H6	359.0	0.3
C3	C2	C1	C6	1.0	0.0
C3	C2	C1	O7	181.5	179.8
C1	C2	C3	O16	178.6	179.9
C3	C2	O16	C15	31.7	359.9
C2	C3	C4	C5	0.8	0.0
C2	C3	C4	C14	181.1	180.0
C4	C3	C2	H3	180.0	179.9
O16	C2	C1	C6	179.7	180.0
O16	C2	C1	O7	0.2	359.7
C1	C2	O16	C3	181.3	180.1
O16	C2	C3	C4	180.2	180.0
O16	C2	C3	H3	0.2	0.1
C2	O16	C15	H151	308.3	300.0
C2	O16	C15	H152	68.2	60.0
C2	O16	C15	H153	188.2	180.0
C4	C3	C2	O16	180.2	180.0
C2	C3	C4	H3	180.0	180.1
C5	C4	C3	C14	179.7	180.0
C3	C4	C5	C6	359.7	360.0
C3	C4	C5	H5	179.7	179.9
C3	C4	C14	O15	122.0	38.7
C3	C4	C14	N3	304.6	218.8
C1	C6	C5	C4	0.2	0.0
C3	C4	C5	C14	180.3	180.0
C5	C4	C3	H3	180.8	180.0
C5	C4	C14	O15	302.3	218.7
C5	C4	C14	N3	124.9	38.7
C4	C5	C6	H6	180.1	180.0
C6	C5	C4	H5	180.0	180.1
C3	C4	C14	C5	179.7	180.0
C14	C4	C3	H3	1.1	359.9
C14	C4	C5	C6	179.4	180.0
C14	C4	C5	H5	359.4	360.0
C10	N3	C14	C4	339.2	183.0
C12	N3	C14	C4	169.0	2.9
O15	C14	C4	N3	177.5	179.9
C5	C6	C1	O7	179.0	180.2
C1	C6	C5	H6	180.0	180.0
C6	C5	C4	C14	179.4	180.0
C4	C5	C6	H5	180.0	179.9
C9	C10	N3	C12	56.7	84.8
C9	C10	N3	C14	246.0	264.7
N3	C10	C9	H101	240.0	240.0
N3	C10	C9	H102	118.8	120.0
H91C	C9	C10	H92C	240.0	240.0
H91C	C9	C10	H93C	120.0	120.0
H92C	C9	C10	H93C	239.9	240.0
H101	C10	C9	H102	238.8	239.9
C4	C14	N3	C10	339.2	183.0
N3	C10	C9	H91C	140.6	180.0
N3	C10	C9	H92C	260.6	300.0
N3	C10	C9	H93C	20.6	60.0
C9	C10	N3	H101	120.0	120.0
C9	C10	N3	H102	241.2	240.0
C13	C12	N3	C10	60.9	78.3
C12	N3	C10	C14	170.7	180.1
C10	N3	C12	H121	300.9	318.3
C10	N3	C12	H122	179.9	198.3
O15	C14	N3	C10	161.8	3.0
H101	C10	N3	H102	121.2	120.0
C10	N3	C12	C13	60.9	78.3
C13	C12	N3	C14	231.5	258.4
N3	C12	C13	H121	240.0	240.0
N3	C12	C13	H122	119.0	120.0
H121	C12	C13	H122	239.0	240.0
H131	C13	C12	H132	240.0	240.0
H131	C13	C12	H133	120.0	119.9
H132	C13	C12	H133	240.0	239.9
C4	C14	N3	C12	169.0	2.9
C10	N3	C12	C14	189.4	179.9
C12	N3	C10	H101	296.7	324.8
C12	N3	C10	H102	175.5	204.8
C13	C12	N3	H121	120.0	120.0
C13	C12	N3	H122	241.0	240.0
N3	C12	C13	H131	153.8	280.8
N3	C12	C13	H132	273.8	40.8
N3	C12	C13	H133	33.8	160.9
O15	C14	N3	C12	351.6	182.9
H121	C12	N3	H122	121.0	120.0
C4	C14	O15	N3	182.7	180.1
C10	N3	C14	O15	161.8	3.0
C12	N3	C14	O15	351.6	182.9
C4	C14	N3	O15	177.4	179.9
C10	N3	C14	C12	170.2	180.1
C14	N3	C10	H101	126.0	144.7
C14	N3	C10	H102	4.7	24.7
C14	N3	C12	H121	111.5	138.4
C14	N3	C12	H122	350.5	18.4
H151	C15	O16	H152	240.0	240.1
H151	C15	O16	H153	120.0	120.0
H152	C15	O16	H153	240.0	240.0
H6	C6	C1	O7	359.0	0.3
C1	C6	H6	C5	180.0	180.0
H6	C6	C5	H5	0.1	0.1
H3	C3	C2	O16	0.2	0.1
C2	C3	H3	C4	180.0	179.9
H3	C3	C4	C5	180.8	180.0
H3	C3	C4	C14	1.1	359.9
H5	C5	C4	C14	359.4	360.0
C4	C5	H5	C6	180.0	180.1
H5	C5	C6	H6	0.1	0.1
H91C	C9	C10	N3	140.6	180.0
C10	C9	H91C	H92C	120.0	120.0
C10	C9	H91C	H93C	240.0	240.0
H91C	C9	C10	H101	260.6	300.0
H91C	C9	C10	H102	21.8	60.0
H92C	C9	H91C	H93C	120.0	120.0
H92C	C9	C10	N3	260.6	300.0
C10	C9	H92C	H91C	240.0	240.1
C10	C9	H92C	H93C	120.0	120.0
H92C	C9	C10	H101	20.6	59.9
H92C	C9	C10	H102	141.8	180.0
H91C	C9	H92C	H93C	240.0	240.0
H93C	C9	C10	N3	20.6	60.0
C10	C9	H93C	H91C	120.0	120.0
C10	C9	H93C	H92C	240.0	240.0
H93C	C9	C10	H101	140.6	180.0
H93C	C9	C10	H102	261.9	300.0
H91C	C9	H93C	H92C	120.0	120.0
C9	C10	H101	N3	237.6	240.1
H101	C10	C9	H91C	260.6	300.0
H101	C10	C9	H92C	20.6	59.9
H101	C10	C9	H93C	140.6	180.0
C9	C10	H101	H102	118.8	120.1
H101	C10	N3	C12	296.7	324.8
H101	C10	N3	C14	126.0	144.7
N3	C10	H101	H102	241.2	240.0
C9	C10	H102	N3	121.6	119.9
H102	C10	C9	H91C	21.8	60.0
H102	C10	C9	H92C	141.8	180.0
H102	C10	C9	H93C	261.9	300.0
C9	C10	H102	H101	240.8	239.9
H102	C10	N3	C12	175.5	204.8
H102	C10	N3	C14	4.7	24.7
N3	C10	H102	H101	119.2	120.0
C13	C12	H121	N3	238.1	240.0
C13	C12	H121	H122	119.1	119.9
H121	C12	C13	H131	273.8	40.8
H121	C12	C13	H132	33.8	160.8
H121	C12	C13	H133	153.8	280.9
H121	C12	N3	C14	111.5	138.4
N3	C12	H121	H122	240.9	240.0
C13	C12	H122	N3	121.3	120.0
C13	C12	H122	H121	240.6	240.0
H122	C12	C13	H131	34.7	160.8
H122	C12	C13	H132	154.8	280.7
H122	C12	C13	H133	274.8	40.9
H122	C12	N3	C14	350.5	18.4
N3	C12	H122	H121	119.4	120.0
H131	C13	C12	N3	153.8	280.8
H131	C13	C12	H121	273.8	40.8
H131	C13	C12	H122	34.7	160.8
C12	C13	H131	H132	120.0	120.0
C12	C13	H131	H133	240.0	240.0
H132	C13	H131	H133	120.0	120.1
H132	C13	C12	N3	273.8	40.8
H132	C13	C12	H121	33.8	160.8
H132	C13	C12	H122	154.8	280.7
C12	C13	H132	H131	240.0	240.0
C12	C13	H132	H133	120.0	120.1
H131	C13	H132	H133	240.0	240.0
H133	C13	C12	N3	33.8	160.9
H133	C13	C12	H121	153.8	280.9
H133	C13	C12	H122	274.8	40.9
C12	C13	H133	H131	120.0	119.9
C12	C13	H133	H132	240.0	239.9
H131	C13	H133	H132	120.0	120.0
O16	C15	H151	H152	120.0	119.9
O16	C15	H151	H153	240.0	240.0
H152	C15	H151	H153	120.0	120.0
O16	C15	H152	H151	240.0	240.0
O16	C15	H152	H153	120.0	120.0
H151	C15	H152	H153	240.0	240.0
O16	C15	H153	H151	120.0	120.0
O16	C15	H153	H152	240.0	240.0
H151	C15	H153	H152	120.0	120.0