PDB Chemical Component 2DD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2DD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CL1	C1	1.761	1.736
C1	C2	1.394	1.390
C1	C6	1.387	1.378
C2	C3	1.393	1.387
C2	O2	1.335	1.359
C3	C4	1.397	1.383
C3	H3	1.103	1.081
C4	O4	1.337	1.358
C4	C5	1.394	1.401
O4	H4	0.950	0.967
O2	H2	0.950	0.967
C6	C5	1.387	1.397
C6	H6	1.103	1.080
C5	C7	1.496	1.476
C7	N2	1.348	1.352
C7	C8	1.398	1.396
N2	N1	1.312	1.399
N2	HA	1.020	0.970
N1	C9	1.346	1.305
C9	C8	1.383	1.412
C9	H9	1.103	1.080
C8	C10	1.523	1.470
C10	O5	1.239	1.217
C10	N3	1.340	1.348
N3	C17	1.362	1.465
N3	HB	1.020	0.969
C17	C11	1.527	1.507
C17	H171	1.115	1.089
C17	H172	1.115	1.090
C11	C12	1.394	1.383
C11	C16	1.394	1.382
C12	C13	1.403	1.382
C12	H12	1.103	1.079
C13	C14	1.398	1.383
C13	H13	1.103	1.080
C16	C15	1.390	1.382
C16	H16	1.103	1.081
C15	C14	1.388	1.382
C15	H15	1.103	1.081
C14	S1	1.761	1.761
S1	O6	1.429	1.421
S1	O7	1.447	1.420
S1	N4	1.584	1.656
N4	H4N1	1.020	0.970
N4	H4N2	1.020	0.970

Bond Angles for 2DD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CL1	C1	C2	120.0	119.9
CL1	C1	C6	119.6	119.9
C2	C1	C6	120.4	120.2
C1	C2	C3	119.8	120.3
C1	C2	O2	119.7	119.9
C1	C6	C5	119.8	119.9
C1	C6	H6	120.1	120.0
C3	C2	O2	120.3	119.9
C2	C3	C4	119.7	120.0
C2	C3	H3	120.2	120.0
C2	O2	H2	119.7	106.7
C4	C3	H3	120.2	120.0
C3	C4	O4	119.7	120.1
C3	C4	C5	119.8	119.8
O4	C4	C5	120.3	120.1
C4	O4	H4	119.6	106.8
C4	C5	C6	120.2	119.7
C4	C5	C7	120.7	120.2
C5	C6	H6	120.1	120.1
C6	C5	C7	119.1	120.1
C5	C7	N2	125.9	126.5
C5	C7	C8	126.5	126.4
N2	C7	C8	107.6	107.0
C7	N2	N1	109.3	108.4
C7	N2	HA	125.3	125.8
C7	C8	C9	105.3	107.0
C7	C8	C10	129.1	126.5
N1	N2	HA	125.3	125.8
N2	N1	C9	109.6	109.2
N1	C9	C8	108.0	108.3
N1	C9	H9	126.0	125.8
C8	C9	H9	126.0	125.9
C9	C8	C10	125.6	126.5
C8	C10	O5	119.3	120.0
C8	C10	N3	121.6	120.0
O5	C10	N3	119.1	120.0
C10	N3	C17	121.1	120.0
C10	N3	HB	119.5	120.0
C17	N3	HB	119.5	120.0
N3	C17	C11	114.7	109.5
N3	C17	H171	110.3	109.5
N3	C17	H172	110.3	109.5
C11	C17	H171	110.3	109.5
C11	C17	H172	110.3	109.5
C17	C11	C12	122.2	120.0
C17	C11	C16	118.4	120.0
H171	C17	H172	100.0	109.5
C12	C11	C16	119.3	120.0
C11	C12	C13	119.9	119.9
C11	C12	H12	120.1	120.0
C11	C16	C15	120.9	120.0
C11	C16	H16	119.6	120.0
C13	C12	H12	120.1	120.0
C12	C13	C14	120.2	120.0
C12	C13	H13	119.9	120.0
C14	C13	H13	119.9	120.0
C13	C14	C15	119.6	120.0
C13	C14	S1	120.6	120.0
C15	C16	H16	119.5	120.0
C16	C15	C14	120.0	120.0
C16	C15	H15	120.0	120.0
C14	C15	H15	120.0	119.9
C15	C14	S1	119.8	120.1
C14	S1	O6	109.9	105.8
C14	S1	O7	109.1	105.8
C14	S1	N4	109.6	107.4
O6	S1	O7	108.4	125.4
O6	S1	N4	111.5	105.7
O7	S1	N4	108.3	105.8
S1	N4	H4N1	109.6	119.9
S1	N4	H4N2	111.5	120.1
H4N1	N4	H4N2	109.9	120.0

Torsion Angles for 2DD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	CL1	C6	178.0	180.1
CL1	C1	C2	C3	179.5	180.0
CL1	C1	C2	O2	4.7	359.9
CL1	C1	C6	C5	180.8	180.1
CL1	C1	C6	H6	0.8	0.0
CL1	C1	C2	C6	182.0	179.9
C2	C1	C6	C5	2.8	360.0
C2	C1	C6	H6	182.8	179.9
C3	C2	C1	O2	174.9	180.0
C1	C2	C3	C4	4.0	359.7
C1	C2	C3	H3	184.0	180.0
C1	C2	O2	H2	180.0	90.1
CL1	C1	C6	C2	178.0	180.1
C6	C1	C2	C3	357.5	0.1
C6	C1	C2	O2	182.6	180.0
C4	C5	C6	C1	355.3	0.2
C5	C6	C1	H6	180.0	180.0
C1	C6	C5	C7	178.1	180.0
C3	C2	C1	C6	357.5	0.1
C1	C2	C3	O2	185.2	180.0
C3	C2	O2	H2	5.2	270.0
C4	C3	C2	H3	180.0	179.7
C2	C3	C4	O4	180.5	180.0
C2	C3	C4	C5	354.1	0.6
O2	C2	C1	C6	182.6	180.0
C1	C2	O2	C3	174.9	180.0
O2	C2	C3	C4	178.9	179.7
O2	C2	C3	H3	358.9	360.0
C4	C3	C2	O2	178.9	179.7
C2	C3	C4	H3	180.0	180.3
O4	C4	C3	C5	186.4	179.4
C3	C4	O4	H4	180.0	90.0
C3	C4	C5	C6	6.2	359.5
C3	C4	C5	C7	183.4	179.7
H3	C3	C2	O2	358.9	360.0
C2	C3	H3	C4	180.0	179.7
H3	C3	C4	O4	0.5	359.7
H3	C3	C4	C5	174.1	180.3
O4	C4	C3	H3	0.5	359.7
C3	C4	O4	C5	173.5	180.6
O4	C4	C5	C6	179.8	180.0
O4	C4	C5	C7	357.0	0.3
C1	C6	C5	C4	355.3	0.2
C5	C4	C3	H3	174.1	180.3
C3	C4	C5	O4	186.5	179.4
C5	C4	O4	H4	6.4	269.4
C4	C5	C6	H6	175.3	180.3
C6	C5	C4	C7	182.8	179.8
C4	C5	C7	N2	309.0	244.7
C4	C5	C7	C8	128.7	64.3
H4	O4	C4	C5	6.4	269.4
C1	C6	C5	H6	180.0	180.0
C4	C5	C6	C7	177.2	180.2
C6	C5	C7	N2	126.2	64.9
C6	C5	C7	C8	305.9	244.5
C1	C6	H6	C5	180.0	180.0
H6	C6	C5	C7	358.1	0.1
C4	C5	C7	C6	182.8	179.8
C7	C5	C6	H6	358.1	0.1
N2	C7	C5	C8	180.3	180.5
C5	C7	N2	N1	180.5	180.0
C5	C7	N2	HA	0.5	359.7
C5	C7	C8	C9	179.8	180.0
C5	C7	C8	C10	359.0	0.3
C5	C7	N2	C8	179.8	179.6
N2	C7	C8	C9	359.6	359.6
N2	C7	C8	C10	178.8	179.9
N1	N2	C7	HA	180.0	180.2
C7	N2	N1	C9	359.3	359.8
C5	C7	C8	N2	180.2	180.4
C8	C7	N2	N1	0.7	0.4
C8	C7	N2	HA	180.7	180.1
N1	C9	C8	C7	0.0	0.2
C7	C8	C9	H9	180.1	180.2
C9	C8	C7	C10	180.7	179.7
C7	C8	C10	O5	152.8	359.7
C7	C8	C10	N3	332.6	179.7
N1	N2	C7	C8	0.7	0.4
C7	N2	N1	HA	180.0	179.8
N2	N1	C9	C8	0.4	360.0
N2	N1	C9	H9	180.3	180.0
HA	N2	C7	C8	180.7	180.1
C7	N2	HA	N1	180.0	180.3
HA	N2	N1	C9	179.3	180.0
C7	C8	C9	N1	0.0	0.2
C9	N1	N2	HA	179.3	180.0
C8	C9	N1	H9	180.0	180.0
N1	C9	C8	C10	180.8	179.9
C7	C8	C9	C10	179.3	180.3
N1	C9	C8	H9	180.0	180.0
C9	C8	C10	O5	331.9	180.0
C9	C8	C10	N3	151.7	0.1
N1	C9	H9	C8	180.0	180.0
H9	C9	C8	C10	0.8	359.9
C7	C8	C10	C9	180.9	179.6
C10	C8	C9	H9	0.8	359.9
O5	C10	C8	N3	180.2	180.0
C8	C10	N3	C17	187.8	180.0
C8	C10	N3	HB	7.8	360.0
C8	C10	O5	N3	179.8	180.0
O5	C10	N3	C17	7.6	0.0
O5	C10	N3	HB	187.6	180.0
C8	C10	N3	O5	180.2	180.0
C17	N3	C10	HB	180.0	180.0
C10	N3	C17	C11	268.8	180.0
C10	N3	C17	H171	143.6	60.0
C10	N3	C17	H172	34.1	300.0
C10	N3	C17	HB	180.0	180.0
C11	C17	N3	H171	125.3	120.0
C11	C17	N3	H172	234.8	240.0
N3	C17	C11	C12	16.5	90.0
N3	C17	C11	C16	192.3	270.0
H171	C17	N3	H172	109.5	120.0
C10	N3	HB	C17	180.0	180.0
HB	N3	C17	C11	88.8	360.0
HB	N3	C17	H171	323.6	240.0
HB	N3	C17	H172	214.1	120.0
C11	C17	N3	HB	88.8	360.0
N3	C17	C11	H171	234.7	240.0
N3	C17	C11	H172	125.2	120.0
H171	C17	C11	H172	250.5	240.0
C12	C11	C17	C16	184.2	180.0
C17	C11	C12	C13	178.9	180.0
C17	C11	C12	H12	358.9	0.0
C17	C11	C16	C15	181.1	179.8
C17	C11	C16	H16	1.1	0.0
H171	C17	N3	HB	323.6	240.0
N3	C17	H171	C11	127.7	120.0
N3	C17	H171	H172	243.9	240.0
C11	C17	H171	H172	116.1	120.0
H171	C17	C11	C12	141.8	210.0
H171	C17	C11	C16	317.6	30.0
H172	C17	N3	HB	214.1	120.0
N3	C17	H172	C11	232.3	240.0
N3	C17	H172	H171	116.2	120.0
C11	C17	H172	H171	243.9	240.0
H172	C17	C11	C12	251.3	330.0
H172	C17	C11	C16	67.1	150.0
C12	C11	C17	H171	141.8	210.0
C12	C11	C17	H172	251.3	330.0
C17	C11	C12	C16	175.8	180.0
C12	C11	C16	C15	357.0	359.8
C12	C11	C16	H16	177.0	180.1
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	C14	357.5	360.0
C11	C12	C13	H13	177.5	180.0
C16	C11	C17	H171	317.6	30.0
C16	C11	C17	H172	67.1	150.0
C17	C11	C16	C12	184.1	180.0
C16	C11	C12	C13	3.1	360.0
C16	C11	C12	H12	183.1	180.0
C15	C16	C11	H16	180.0	179.8
C11	C16	C15	C14	2.3	0.5
C11	C16	C15	H15	182.3	180.0
C13	C12	C11	C16	3.1	360.0
C11	C12	C13	H12	180.0	180.0
C14	C13	C12	H13	180.0	179.9
C12	C13	C14	C15	1.8	0.3
C12	C13	C14	S1	180.4	180.0
H12	C12	C11	C16	183.1	180.0
C11	C12	H12	C13	180.0	180.0
H12	C12	C13	C14	177.4	180.0
H12	C12	C13	H13	357.5	0.0
C14	C13	C12	H12	177.4	180.0
C12	C13	C14	H13	180.0	180.1
C16	C15	C14	C13	358.4	359.5
C13	C14	C15	H15	178.4	180.0
C15	C14	C13	S1	181.3	180.3
C13	C14	S1	O6	230.9	202.6
C13	C14	S1	O7	112.2	337.4
C13	C14	S1	N4	353.8	90.0
H13	C13	C12	H12	357.5	0.0
C12	C13	H13	C14	180.0	179.9
H13	C13	C14	C15	181.7	180.2
H13	C13	C14	S1	0.4	359.9
C11	C16	C15	H16	180.0	180.2
C13	C14	C15	C16	358.4	359.5
C14	C15	C16	H15	180.0	180.5
C16	C15	C14	S1	179.7	179.8
C11	C16	H16	C15	180.0	179.8
H16	C16	C15	C14	182.2	180.2
H16	C16	C15	H15	2.2	359.7
C15	C14	C13	H13	181.7	180.2
C13	C14	C15	S1	178.7	179.7
C14	C15	C16	H16	182.2	180.2
C16	C15	C14	H15	180.0	179.5
C15	C14	S1	O6	49.6	22.3
C15	C14	S1	O7	290.9	157.1
C15	C14	S1	N4	172.5	269.7
H15	C15	C16	H16	2.2	359.7
C16	C15	H15	C14	180.0	180.5
H15	C15	C14	S1	359.7	0.3
S1	C14	C13	H13	0.4	359.9
C13	C14	S1	C15	181.3	180.3
S1	C14	C15	H15	359.7	0.3
O6	S1	C14	O7	118.7	225.2
O6	S1	C14	N4	237.1	112.6
O7	S1	C14	N4	118.4	247.4
C14	S1	N4	H4N1	180.0	359.9
C14	S1	N4	H4N2	58.1	179.7
C14	S1	O6	O7	240.8	123.2
C14	S1	O6	N4	121.8	246.3
O7	S1	O6	N4	240.9	123.1
O6	S1	N4	H4N1	302.0	247.3
O6	S1	N4	H4N2	180.0	67.1
C14	S1	O7	O6	119.7	236.8
C14	S1	O7	N4	240.8	113.8
O6	S1	O7	N4	121.1	236.9
O7	S1	N4	H4N1	61.1	112.6
O7	S1	N4	H4N2	299.1	292.4
C14	S1	N4	O6	238.1	112.6
C14	S1	N4	O7	118.9	247.4
O6	S1	N4	O7	240.8	134.8
H4N1	N4	S1	H4N2	122.0	180.2
S1	N4	H4N1	H4N2	237.1	179.8
S1	N4	H4N2	H4N1	121.8	180.2