PDB Chemical Component 2D8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2D8

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.516	1.530
C2	N1	1.406	1.469
C2	P	1.815	1.823
O62	C6	1.220	1.208
C4	P	1.814	1.823
C4	C5	1.495	1.530
P	O31	1.546	1.479
P	O32	1.563	1.610
C6	C5	1.522	1.507
C6	O61	1.219	1.341
C7	C5	1.518	1.530
C4	H1	1.100	1.089
C4	H2	1.100	1.090
C5	H3	1.100	1.091
C7	H4	1.100	1.090
C7	H5	1.100	1.091
C7	H6	1.100	1.089
N1	H7	1.000	1.009
N1	H8	1.000	1.009
C1	H10	1.100	1.089
C1	H11	1.100	1.090
C1	H12	1.100	1.091
C2	H13	1.101	1.089
O32	H14	0.950	0.967
O61	H15	0.949	0.968

Bond Angles for 2D8

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	H10	109.5	109.5
C2	C1	H11	109.5	109.5
C2	C1	H12	109.5	109.5
C1	C2	H13	110.4	109.5
C2	N1	H7	109.5	111.0
C2	N1	H8	109.5	111.0
C2	P	O31	111.0	109.5
C2	P	O32	109.2	109.5
C5	C4	P	114.4	109.4
C4	P	O31	107.9	109.5
C4	P	O32	114.2	109.5
P	C4	H1	108.2	109.5
P	C4	H2	108.2	109.5
C5	C4	H1	108.2	109.5
C5	C4	H2	108.2	109.5
C4	C5	H3	109.0	109.5
O31	P	O32	106.8	109.5
P	O32	H14	109.5	114.0
C6	C5	H3	108.7	109.4
C6	O61	H15	109.5	117.0
C7	C5	H3	108.8	109.5
H1	C4	H2	109.4	109.5
H4	C7	H5	109.5	109.4
H4	C7	H6	109.5	109.5
H5	C7	H6	109.5	109.5
H7	N1	H8	109.4	111.0
H10	C1	H11	109.5	109.5
H10	C1	H12	109.4	109.4
H11	C1	H12	109.5	109.4

Torsion Angles for 2D8

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	N1	H7	180.0	60.0
C1	C2	N1	H8	300.0	183.9
C1	C2	P	O31	307.8	60.0
C1	C2	P	O32	190.3	300.0
H10	C1	C2	H11	240.0	240.0
H10	C1	C2	H12	120.0	120.0
H11	C1	C2	H12	240.0	240.0
H7	N1	C2	H8	240.0	236.1
P	C2	N1	H7	64.4	300.0
P	C2	N1	H8	184.4	64.0
C4	P	C2	O31	117.9	120.0
C4	P	C2	O32	235.4	240.0
C2	P	C4	H1	322.3	65.0
C2	P	C4	H2	80.8	305.0
O31	P	C2	O32	117.5	120.0
C2	P	O32	H14	120.1	299.9
O62	C6	C5	H3	153.2	120.0
O62	C6	O61	H15	0.0	0.0
C2	P	C4	O31	240.0	240.0
C2	P	C4	O32	121.5	120.0
C5	C4	P	H1	239.3	120.0
C5	C4	P	H2	120.7	240.0
P	C4	C5	H3	321.3	45.0
O31	P	C4	O32	241.5	240.0
C4	P	O32	H14	240.9	59.9
H1	C4	P	H2	241.5	120.0
C5	C4	P	O31	321.5	305.0
C5	C4	P	O32	80.0	65.0
P	C4	C5	H1	120.7	240.0
P	C4	C5	H2	239.3	120.0
C6	C5	C4	H3	119.1	120.0
C7	C5	C4	H3	241.9	240.0
H1	C4	C5	H2	118.5	240.0
C2	P	O31	O32	241.0	240.0
C4	P	O31	O32	123.2	120.0
O31	P	C4	H1	82.2	185.0
O31	P	C4	H2	200.8	65.0
O31	P	O32	H14	360.0	179.9
C2	P	O32	O31	120.2	120.0
C4	P	O32	O31	240.9	240.0
O32	P	C4	H1	200.7	305.0
O32	P	C4	H2	319.3	185.0
C6	C5	C4	P	80.4	165.0
C6	C5	C4	H1	319.6	285.0
C6	C5	C4	H2	201.1	45.0
C4	C5	C6	H3	240.7	240.0
C7	C5	C6	H3	120.3	120.0
O61	C6	C5	H3	331.2	300.1
C7	C5	C4	P	203.2	285.0
C7	C5	C4	H1	82.5	45.0
C7	C5	C4	H2	324.0	165.0
C4	C5	C7	H3	118.2	120.0
C6	C5	C7	H3	239.7	240.1
C5	C4	H1	P	124.5	240.0
H1	C4	P	O31	82.2	185.0
H1	C4	P	O32	200.7	305.0
P	C4	H1	H2	117.8	240.0
C5	C4	H1	H2	242.3	120.0
H1	C4	C5	H3	200.6	165.0
C5	C4	H2	P	235.5	120.0
H2	C4	P	O31	200.8	65.0
H2	C4	P	O32	319.3	185.0
P	C4	H2	H1	242.2	120.1
C5	C4	H2	H1	117.7	240.0
H2	C4	C5	H3	82.0	285.0
H3	C5	C4	P	321.3	45.0
H3	C5	C4	H1	200.6	165.0
H3	C5	C4	H2	82.0	285.0
H4	C7	C5	H3	61.8	300.0
H5	C7	H4	H6	120.0	120.0
H5	C7	C5	H3	181.8	60.0
H4	C7	H5	H6	240.0	240.0
H6	C7	C5	H3	301.8	179.9
H4	C7	H6	H5	120.0	120.0
C2	N1	H7	H8	120.0	124.0
C2	N1	H8	H7	240.0	236.0
C2	C1	H10	H11	120.0	120.0
C2	C1	H10	H12	240.0	240.0
H10	C1	C2	H13	53.4	300.0
H11	C1	H10	H12	120.0	120.0
C2	C1	H11	H10	240.0	239.9
C2	C1	H11	H12	120.0	120.0
H11	C1	C2	H13	173.5	60.0
H10	C1	H11	H12	240.0	240.0
C2	C1	H12	H10	120.0	120.1
C2	C1	H12	H11	240.0	240.0
H12	C1	C2	H13	293.5	180.0
H10	C1	H12	H11	120.0	120.0
H13	C2	C1	H10	53.4	300.0
H13	C2	C1	H11	173.5	60.0
H13	C2	C1	H12	293.5	180.0
H13	C2	N1	H7	305.7	180.0
H13	C2	N1	H8	65.6	303.9
H13	C2	P	O31	190.9	300.0
H13	C2	P	O32	73.4	180.0