PDB Chemical Component 2D7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2D7

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O6	C17	1.214	1.213
C17	C18	1.508	1.507
C17	C14	1.494	1.468
C18	H181	1.115	1.090
C18	H182	1.115	1.089
C18	H183	1.115	1.090
C14	C15	1.395	1.400
C14	C13	1.401	1.401
C15	C16	1.390	1.366
C15	H15	1.103	1.080
C16	C11	1.405	1.392
C16	H16	1.103	1.080
C13	C12	1.393	1.366
C13	H13	1.103	1.079
C12	C11	1.388	1.392
C12	H12	1.103	1.081
C11	N3	1.349	1.393
N3	C10	1.336	1.348
N3	H3	1.020	0.970
C10	O5	1.244	1.216
C10	C8	1.506	1.470
C8	C9	1.379	1.412
C8	C7	1.443	1.396
C9	N1	1.338	1.304
C9	H9	1.103	1.080
N1	N2	1.314	1.399
N2	C7	1.318	1.352
N2	H2	1.020	0.970
C7	C5	1.504	1.475
C5	C6	1.390	1.397
C5	C4	1.410	1.402
C6	C1	1.370	1.378
C6	H6	1.103	1.080
C1	CL1	1.760	1.736
C1	C2	1.375	1.391
C2	O2	1.326	1.358
C2	C3	1.373	1.387
O2	HA	0.950	0.967
C3	C4	1.402	1.384
C3	HB	1.103	1.080
C4	O4	1.337	1.358
O4	H4	0.950	0.968

Bond Angles for 2D7

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O6	C17	C18	121.3	120.0
O6	C17	C14	120.7	120.0
C18	C17	C14	118.0	120.0
C17	C18	H181	121.3	109.5
C17	C18	H182	108.0	109.5
C17	C18	H183	108.0	109.5
C17	C14	C15	120.1	120.1
C17	C14	C13	121.6	120.1
H181	C18	H182	108.0	109.5
H181	C18	H183	108.0	109.4
H182	C18	H183	101.9	109.5
C15	C14	C13	118.2	119.8
C14	C15	C16	120.6	119.9
C14	C15	H15	119.7	120.1
C14	C13	C12	120.7	119.8
C14	C13	H13	119.7	120.1
C16	C15	H15	119.7	120.0
C15	C16	C11	121.3	120.1
C15	C16	H16	119.4	119.9
C11	C16	H16	119.4	120.0
C16	C11	C12	117.5	120.2
C16	C11	N3	122.7	119.9
C12	C13	H13	119.7	120.1
C13	C12	C11	121.3	120.2
C13	C12	H12	119.3	119.9
C11	C12	H12	119.3	119.9
C12	C11	N3	118.6	119.9
C11	N3	C10	132.3	120.0
C11	N3	H3	113.8	120.0
C10	N3	H3	113.8	120.1
N3	C10	O5	121.4	120.1
N3	C10	C8	119.9	120.0
O5	C10	C8	118.5	120.0
C10	C8	C9	127.9	126.5
C10	C8	C7	126.3	126.5
C9	C8	C7	105.0	107.0
C8	C9	N1	105.9	108.3
C8	C9	H9	127.0	125.9
C8	C7	N2	108.0	107.0
C8	C7	C5	130.0	126.5
N1	C9	H9	127.1	125.8
C9	N1	N2	113.1	109.3
N1	N2	C7	107.7	108.4
N1	N2	H2	126.1	125.8
C7	N2	H2	126.2	125.8
N2	C7	C5	121.8	126.5
C7	C5	C6	120.0	120.2
C7	C5	C4	122.3	120.1
C6	C5	C4	117.8	119.8
C5	C6	C1	121.0	120.0
C5	C6	H6	119.5	120.0
C5	C4	C3	120.1	119.8
C5	C4	O4	122.9	120.1
C1	C6	H6	119.5	120.0
C6	C1	CL1	120.3	119.9
C6	C1	C2	121.6	120.2
CL1	C1	C2	118.0	119.9
C1	C2	O2	118.6	119.9
C1	C2	C3	119.1	120.2
O2	C2	C3	122.3	119.9
C2	O2	HA	118.6	106.8
C2	C3	C4	120.4	120.1
C2	C3	HB	119.8	120.0
C4	C3	HB	119.8	120.0
C3	C4	O4	117.0	120.1
C4	O4	H4	122.9	106.8

Torsion Angles for 2D7

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C18	C17	O6	C14	181.9	180.0
O6	C17	C18	H181	180.0	360.0
O6	C17	C18	H182	54.7	120.0
O6	C17	C18	H183	305.3	240.0
O6	C17	C14	C15	181.3	359.9
O6	C17	C14	C13	2.3	179.7
O6	C17	C18	C14	178.2	180.0
C18	C17	C14	C15	359.4	179.9
C18	C17	C14	C13	180.5	359.8
H181	C18	C17	H182	125.3	239.9
H181	C18	C17	H183	234.7	119.9
H182	C18	C17	H183	109.5	240.0
O6	C17	C14	C18	181.8	180.0
C14	C17	C18	H181	1.8	179.9
C14	C17	C18	H182	236.6	300.0
C14	C17	C18	H183	127.1	60.0
C15	C14	C17	C13	179.0	180.2
C17	C14	C15	C16	181.1	180.0
C17	C14	C15	H15	1.2	0.1
C17	C14	C13	C12	178.8	179.7
C17	C14	C13	H13	358.8	0.3
H181	C18	C17	C14	1.8	179.9
C17	C18	H181	H182	234.7	120.1
C17	C18	H181	H183	125.3	240.0
H182	C18	H181	H183	250.5	120.0
H182	C18	C17	C14	236.6	300.0
C17	C18	H182	H181	132.8	240.0
C17	C18	H182	H183	246.4	120.0
H181	C18	H182	H183	113.6	240.0
H183	C18	C17	C14	127.1	60.0
C17	C18	H183	H181	227.2	120.0
C17	C18	H183	H182	113.6	240.0
H181	C18	H183	H182	246.4	120.0
C17	C14	C15	C13	181.0	179.8
C15	C14	C13	C12	359.8	359.5
C15	C14	C13	H13	179.8	180.1
C16	C15	C14	H15	180.0	179.9
C14	C15	C16	C11	3.4	0.1
C14	C15	C16	H16	183.5	180.0
C17	C14	C13	C15	179.0	180.2
C13	C14	C15	C16	0.1	0.2
C13	C14	C15	H15	180.2	180.2
C12	C13	C14	H13	180.0	179.5
C14	C13	C12	C11	356.7	0.5
C14	C13	C12	H12	176.7	180.2
C16	C15	C14	C13	0.1	0.2
C14	C15	C16	H15	180.0	180.1
C11	C16	C15	H16	180.0	180.0
C15	C16	C11	C12	353.2	360.0
C15	C16	C11	N3	185.5	180.0
H15	C15	C14	C13	180.2	180.2
C14	C15	H15	C16	180.0	179.9
H15	C15	C16	C11	183.4	180.0
H15	C15	C16	H16	3.4	360.0
C11	C16	C15	H15	183.4	180.0
C15	C16	C11	H16	180.0	180.0
C13	C12	C11	C16	6.7	359.7
C16	C11	C12	H12	186.7	180.0
C12	C11	C16	N3	167.7	180.0
C16	C11	N3	C10	345.2	33.7
C16	C11	N3	H3	165.2	213.7
H16	C16	C15	H15	3.4	360.0
C15	C16	H16	C11	180.0	180.0
H16	C16	C11	C12	173.2	180.0
H16	C16	C11	N3	5.5	0.1
C14	C13	C12	H13	180.0	180.5
C16	C11	C12	C13	6.7	359.7
C11	C12	C13	H12	180.0	180.3
C13	C12	C11	N3	174.9	179.7
C14	C13	H13	C12	180.0	179.5
H13	C13	C12	C11	176.7	180.0
H13	C13	C12	H12	356.7	359.7
C12	C11	C16	H16	173.2	180.0
C16	C11	C12	N3	191.7	180.0
C11	C12	C13	H13	176.7	180.0
C13	C12	C11	H12	180.0	179.7
C12	C11	N3	C10	177.6	213.7
C12	C11	N3	H3	357.6	33.7
H12	C12	C13	H13	356.7	359.7
C13	C12	H12	C11	180.0	180.3
H12	C12	C11	N3	354.9	360.0
N3	C11	C16	H16	5.5	0.1
C16	C11	N3	C12	167.6	180.0
N3	C11	C12	H12	354.9	360.0
C10	N3	C11	H3	180.0	180.0
C11	N3	C10	O5	354.1	5.5
C11	N3	C10	C8	169.4	185.5
C11	N3	C10	H3	180.0	180.0
O5	C10	N3	C8	184.7	180.0
N3	C10	C8	C9	149.8	0.0
N3	C10	C8	C7	317.9	179.7
C11	N3	H3	C10	180.0	180.0
H3	N3	C10	O5	174.1	185.5
H3	N3	C10	C8	349.4	5.5
O5	C10	N3	H3	174.1	185.5
N3	C10	O5	C8	175.4	180.0
O5	C10	C8	C9	325.2	180.1
O5	C10	C8	C7	133.3	359.8
C8	C10	N3	H3	349.4	5.5
N3	C10	C8	O5	184.6	180.0
C9	C8	C10	C7	191.9	180.3
C10	C8	C9	N1	173.8	180.0
C10	C8	C9	H9	353.8	359.9
C10	C8	C7	N2	184.3	179.9
C10	C8	C7	C5	9.7	0.2
C10	C8	C9	C7	170.1	179.7
C9	C8	C7	N2	354.6	359.6
C9	C8	C7	C5	180.0	180.0
N1	C9	C8	H9	180.0	180.1
C8	C9	N1	N2	359.0	360.0
C10	C8	C7	C9	189.7	180.3
C7	C8	C9	N1	3.7	0.3
C7	C8	C9	H9	183.7	180.2
N1	N2	C7	C8	4.8	0.4
C8	C7	N2	H2	184.9	180.2
N2	C7	C8	C5	174.7	179.6
C8	C7	C5	C6	323.5	244.5
C8	C7	C5	C4	143.8	64.2
N1	C9	C8	C7	3.7	0.3
C8	C9	N1	H9	180.0	179.9
C9	N1	N2	C7	357.4	359.8
C9	N1	N2	H2	177.4	180.0
H9	C9	C8	C7	183.7	180.2
C8	C9	H9	N1	180.0	180.1
H9	C9	N1	N2	179.1	180.1
C8	C7	N2	N1	4.8	0.4
N2	N1	C9	H9	179.1	180.1
C7	N2	N1	H2	180.0	179.8
N1	N2	C7	C5	180.0	180.0
C8	C7	N2	C5	184.8	180.4
N1	N2	C7	H2	180.0	180.2
N2	C7	C5	C6	149.5	64.9
N2	C7	C5	C4	329.8	244.7
N1	N2	H2	C7	180.0	179.7
H2	N2	C7	C5	0.0	359.8
C8	C7	C5	N2	174.0	179.6
C5	C7	N2	H2	0.0	359.8
C6	C5	C7	C4	179.6	180.3
C7	C5	C6	C1	177.3	179.9
C7	C5	C6	H6	357.4	360.0
C7	C5	C4	C3	182.2	179.8
C7	C5	C4	O4	2.0	0.3
C7	C5	C6	C4	180.3	179.7
C6	C5	C4	C3	2.6	359.6
C6	C5	C4	O4	182.4	180.0
C1	C6	C5	H6	180.0	179.9
C5	C6	C1	CL1	178.5	180.0
C5	C6	C1	C2	1.7	0.0
C7	C5	C4	C6	179.7	180.3
C4	C5	C6	C1	357.0	0.2
C4	C5	C6	H6	177.0	180.3
C2	C3	C4	C5	359.2	0.5
C5	C4	C3	HB	179.2	180.2
C3	C4	C5	O4	180.2	179.5
C5	C4	O4	H4	180.0	269.5
C1	C6	C5	C4	357.0	0.2
C5	C6	C1	H6	180.0	180.1
CL1	C1	C6	C2	176.9	180.0
C6	C1	C2	O2	181.1	180.0
C6	C1	C2	C3	0.2	360.0
H6	C6	C5	C4	177.0	180.3
C5	C6	H6	C1	180.0	179.9
H6	C6	C1	CL1	358.5	359.9
H6	C6	C1	C2	181.6	180.0
CL1	C1	C6	H6	358.5	359.9
C6	C1	CL1	C2	183.0	180.0
CL1	C1	C2	O2	4.1	360.0
CL1	C1	C2	C3	183.3	180.0
C2	C1	C6	H6	181.6	180.0
C6	C1	C2	CL1	177.0	180.0
O2	C2	C1	C3	180.9	180.0
C1	C2	O2	HA	180.0	90.0
C1	C2	C3	C4	359.4	359.7
C1	C2	C3	HB	179.3	180.0
C1	C2	O2	C3	179.1	180.0
O2	C2	C3	C4	178.5	179.8
O2	C2	C3	HB	358.4	0.0
C5	C4	C3	C2	359.2	0.5
C1	C2	C3	O2	180.9	180.0
C3	C2	O2	HA	0.9	270.0
C4	C3	C2	HB	180.0	179.7
C2	C3	C4	O4	179.4	180.0
HA	O2	C2	C3	0.9	270.0
C5	C4	C3	O4	179.8	180.5
C2	C3	C4	HB	180.0	180.3
C3	C4	O4	H4	359.8	90.0
C2	C3	HB	C4	180.0	179.7
HB	C3	C4	O4	359.4	359.8
C5	C4	O4	C3	180.2	179.5
O4	C4	C3	HB	359.4	359.8