PDB Chemical Component 2D4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2D4

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C8	C11	1.352	1.385
C8	C1	1.336	1.333
C11	C10	1.344	1.334
C10	S2	1.690	1.759
S2	C1	1.673	1.759
C1	S1	1.761	1.763
S1	O2	1.505	1.421
S1	O1	1.506	1.420
S1	N	1.630	1.656
N	C9	1.330	1.399
C9	C6	1.390	1.387
C9	C16	1.390	1.390
C6	C2	1.390	1.394
C16	C15	1.390	1.382
C15	C5	1.391	1.384
C5	O3	1.360	1.359
C5	C2	1.389	1.400
C2	C3	1.391	1.480
C3	C4	1.390	1.415
C3	C7	1.390	1.389
C4	C17	1.390	1.403
C4	C12	1.390	1.416
C17	C19	1.389	1.362
C19	C20	1.390	1.393
C20	C18	1.390	1.361
C18	C12	1.390	1.406
C12	C14	1.390	1.406
C14	C13	1.390	1.360
C13	C7	1.391	1.396
C7	O4	1.360	1.358
C8	H8	1.080	1.080
C11	H11	1.080	1.080
C10	H10	1.080	1.080
N	H	1.000	0.970
C6	H6	1.080	1.079
C16	H16	1.080	1.080
C15	H15	1.080	1.080
O3	H3	0.949	0.968
C17	H17	1.080	1.081
C19	H19	1.080	1.080
C20	H20	1.080	1.080
C18	H18	1.080	1.080
C14	H14	1.080	1.080
C13	H13	1.080	1.080
O4	H4	0.950	0.966

Bond Angles for 2D4

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C11	C8	C1	113.9	114.9
C8	C11	C10	115.9	114.9
C11	C8	H8	123.1	122.5
C8	C11	H11	122.0	122.5
C8	C1	S2	108.5	109.6
C8	C1	S1	125.7	125.2
C1	C8	H8	123.0	122.6
C11	C10	S2	106.5	109.6
C10	C11	H11	122.0	122.6
C11	C10	H10	126.7	125.2
C10	S2	C1	95.1	91.0
S2	C10	H10	126.8	125.2
S2	C1	S1	125.8	125.2
C1	S1	O2	109.6	106.4
C1	S1	O1	109.6	106.4
C1	S1	N	104.3	107.2
O2	S1	O1	110.0	123.2
O2	S1	N	111.6	106.4
O1	S1	N	111.6	106.4
S1	N	C9	120.0	120.0
S1	N	H	106.1	120.0
N	C9	C6	120.0	119.9
N	C9	C16	120.0	120.0
C9	N	H	106.1	120.0
C6	C9	C16	120.0	120.1
C9	C6	C2	120.0	119.8
C9	C6	H6	120.0	120.1
C9	C16	C15	120.0	120.3
C9	C16	H16	120.0	119.8
C6	C2	C5	120.0	119.7
C6	C2	C3	120.0	120.1
C2	C6	H6	120.0	120.1
C16	C15	C5	120.0	120.1
C15	C16	H16	120.0	119.9
C16	C15	H15	120.0	119.9
C15	C5	O3	120.0	120.0
C15	C5	C2	120.0	119.9
C5	C15	H15	120.0	120.0
O3	C5	C2	120.0	120.0
C5	O3	H3	109.5	114.0
C5	C2	C3	120.0	120.2
C2	C3	C4	120.0	120.4
C2	C3	C7	120.0	120.4
C4	C3	C7	120.0	119.2
C3	C4	C17	120.0	121.2
C3	C4	C12	120.0	119.4
C3	C7	C13	120.0	120.5
C3	C7	O4	120.0	119.7
C17	C4	C12	120.0	119.4
C4	C17	C19	120.0	119.7
C4	C17	H17	120.0	120.1
C4	C12	C18	120.0	119.3
C4	C12	C14	120.0	119.6
C17	C19	C20	120.0	120.9
C19	C17	H17	120.0	120.1
C17	C19	H19	120.0	119.6
C19	C20	C18	120.0	121.0
C20	C19	H19	120.0	119.6
C19	C20	H20	120.0	119.5
C20	C18	C12	120.0	119.7
C18	C20	H20	120.0	119.6
C20	C18	H18	120.0	120.2
C18	C12	C14	120.0	121.1
C12	C18	H18	120.0	120.2
C12	C14	C13	120.0	120.2
C12	C14	H14	120.0	120.0
C14	C13	C7	120.0	121.1
C13	C14	H14	120.0	119.8
C14	C13	H13	120.0	119.6
C13	C7	O4	120.0	119.7
C7	C13	H13	120.0	119.4
C7	O4	H4	109.5	114.0

Torsion Angles for 2D4

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C11	C8	C1	S2	360.0	0.0
C11	C8	C1	S1	180.0	180.0
C1	C8	C11	H8	180.0	180.3
C8	C11	C10	S2	360.0	359.9
C10	C11	C8	H11	180.0	180.0
C8	C11	C10	H10	180.0	180.0
C1	C8	C11	C10	0.0	0.0
C11	C8	C1	H8	180.0	179.7
C1	C8	C11	H11	180.0	180.0
C10	S2	C1	C8	360.0	360.0
S2	C1	C8	S1	180.0	180.0
C8	C1	S1	O2	230.1	200.9
C8	C1	S1	O1	351.0	333.8
C8	C1	S1	N	110.6	87.4
C10	C11	C8	C1	0.0	0.0
C10	C11	C8	H8	180.0	179.8
C8	C11	C10	H11	180.0	180.0
C11	C10	S2	C1	0.0	0.1
S2	C10	C11	H10	180.0	179.9
C8	C1	S2	C10	360.0	360.0
S2	C10	C11	H11	180.0	180.0
C11	C10	S2	H10	180.0	180.1
C10	S2	C1	S1	180.0	180.0
C8	C1	S2	S1	180.0	180.0
S2	C1	C8	H8	180.0	180.3
C1	S2	C10	H10	180.0	180.0
S2	C1	S1	O2	50.1	20.8
S2	C1	S1	O1	171.0	153.8
S2	C1	S1	N	290.5	267.4
C8	C1	S1	S2	180.0	180.1
S1	C1	C8	H8	360.0	0.2
O2	S1	C1	O1	239.1	227.1
O2	S1	C1	N	119.6	113.5
O1	S1	C1	N	240.4	246.4
C1	S1	N	C9	281.3	294.8
C1	S1	N	H	41.3	114.8
C1	S1	O2	O1	120.6	123.0
C1	S1	O2	N	245.0	246.0
O1	S1	O2	N	124.4	123.0
O2	S1	N	C9	163.0	181.3
O2	S1	N	H	283.1	1.4
C1	S1	O1	O2	239.4	237.1
C1	S1	O1	N	115.0	114.1
O2	S1	O1	N	235.6	237.0
O1	S1	N	C9	39.5	48.4
O1	S1	N	H	159.5	228.4
C1	S1	N	O2	118.2	113.5
C1	S1	N	O1	241.8	246.4
O2	S1	N	O1	123.5	132.9
S1	N	C9	C6	83.2	105.0
S1	N	C9	C16	263.3	284.7
C9	N	S1	H	240.0	180.0
S1	N	C9	H	120.0	180.0
C6	C9	N	C16	179.9	180.2
N	C9	C6	C2	180.0	180.0
N	C9	C6	H6	360.0	0.0
N	C9	C16	C15	180.0	180.0
N	C9	C16	H16	0.0	359.9
N	C9	C6	C16	180.1	179.8
C6	C9	N	H	323.2	284.9
C6	C9	C16	C15	0.0	359.8
C6	C9	C16	H16	180.1	179.7
C9	C6	C2	C5	360.0	0.0
C9	C6	C2	C3	180.1	180.0
C2	C6	C9	H6	180.0	180.0
N	C9	C16	C6	179.9	180.2
C16	C9	N	H	143.3	104.7
C16	C9	C6	C2	360.0	0.2
C16	C9	C6	H6	179.9	180.2
C9	C16	C15	C5	0.0	360.0
C15	C16	C9	H16	180.0	180.1
C9	C16	C15	H15	180.0	180.0
C2	C6	C9	C16	360.0	0.2
C9	C6	C2	H6	180.0	180.0
C15	C5	C2	C6	0.1	359.7
O3	C5	C2	C6	180.0	180.0
C5	C2	C6	C3	179.9	180.1
C6	C2	C3	C4	291.6	90.1
C6	C2	C3	C7	111.7	269.7
C9	C16	C15	H16	180.0	179.9
C16	C15	C5	O3	180.0	180.0
C16	C15	C5	C2	359.9	0.3
C5	C15	C16	H15	180.0	180.0
C6	C2	C5	C15	0.1	359.7
C5	C15	C16	H16	180.0	180.1
C16	C15	C5	H15	180.0	180.0
O3	C5	C15	C2	180.1	179.7
C15	C5	O3	H3	180.0	90.0
C15	C5	C2	C3	180.0	179.8
C6	C2	C5	O3	180.0	180.0
C15	C5	O3	C2	179.9	180.3
O3	C5	C15	H15	0.0	0.0
O3	C5	C2	C3	359.9	0.0
C6	C2	C5	C3	180.1	179.9
C5	C2	C6	H6	180.0	180.0
C15	C5	C2	O3	180.1	179.7
C2	C5	C15	H15	179.9	180.3
C2	C5	O3	H3	0.1	269.7
C5	C2	C3	C4	111.7	270.0
C5	C2	C3	C7	291.7	89.7
C6	C2	C3	C5	179.9	180.1
C3	C2	C6	H6	0.1	360.0
C4	C3	C2	C7	179.9	180.3
C2	C3	C4	C17	0.0	360.0
C2	C3	C4	C12	180.0	180.0
C2	C3	C7	C13	180.0	179.7
C2	C3	C7	O4	359.9	0.0
C2	C3	C4	C7	180.1	179.7
C4	C3	C7	C13	0.1	359.4
C4	C3	C7	O4	180.0	179.7
C17	C4	C3	C12	180.0	180.0
C3	C4	C17	C19	179.9	180.0
C3	C4	C17	H17	359.9	0.0
C3	C4	C12	C18	180.0	179.9
C3	C4	C12	C14	0.0	359.9
C2	C3	C7	C4	179.9	180.3
C7	C3	C4	C17	180.0	180.3
C7	C3	C4	C12	360.0	0.3
C14	C13	C7	C3	359.9	0.6
C13	C7	C3	O4	180.1	179.7
C3	C7	C13	H13	179.9	180.3
C3	C7	O4	H4	180.0	90.0
C17	C4	C3	C7	180.0	180.3
C3	C4	C17	C12	180.0	180.0
C17	C4	C12	C18	360.0	360.0
C17	C4	C12	C14	180.0	180.0
C4	C17	C19	C20	0.1	0.0
C19	C17	C4	H17	180.0	180.0
C4	C17	C19	H19	180.1	180.0
C12	C4	C3	C7	360.0	0.3
C3	C4	C12	C17	180.0	180.0
C12	C4	C17	C19	359.9	360.0
C12	C4	C17	H17	179.9	180.0
C20	C18	C12	C4	0.1	0.1
C18	C12	C4	C14	180.0	180.0
C4	C12	C18	H18	180.1	180.0
C4	C12	C14	C13	-0.0	0.0
C4	C12	C14	H14	180.0	180.0
C19	C17	C4	C12	359.9	360.0
C4	C17	C19	H17	180.0	180.0
C17	C19	C20	C18	360.0	360.0
C20	C19	C17	H19	180.0	180.0
C17	C19	C20	H20	180.0	180.0
C20	C19	C17	H17	180.1	180.0
C17	C19	C20	H19	180.0	180.0
C19	C20	C18	C12	359.9	360.0
C18	C20	C19	H20	180.0	180.0
C19	C20	C18	H18	179.9	180.0
C4	C12	C18	C20	0.1	0.1
C18	C20	C19	H19	180.0	180.0
C19	C20	C18	H20	180.0	180.0
C20	C18	C12	C14	180.1	180.0
C12	C18	C20	H18	180.0	179.9
C4	C12	C18	C14	180.0	180.0
C12	C18	C20	H20	180.0	180.0
C20	C18	C12	H18	180.0	180.1
C18	C12	C14	C13	180.0	180.0
C18	C12	C14	H14	0.0	0.0
C4	C12	C14	C18	180.0	180.0
C14	C12	C18	H18	0.1	360.0
C12	C14	C13	C7	0.0	359.7
C13	C14	C12	H14	180.0	180.0
C12	C14	C13	H13	180.0	180.0
C3	C7	C13	C14	359.9	0.6
C12	C14	C13	H14	180.0	180.0
C14	C13	C7	O4	180.0	180.3
C7	C13	C14	H13	180.0	179.7
C3	C7	C13	O4	179.9	180.3
C7	C13	C14	H14	180.0	179.7
C14	C13	C7	H13	180.0	180.3
C13	C7	O4	H4	360.0	270.2
C3	C7	O4	C13	180.1	179.7
O4	C7	C13	H13	360.0	360.0
C11	C8	H8	C1	180.0	180.3
H8	C8	C11	C10	180.0	179.8
H8	C8	C11	H11	0.0	359.7
H8	C8	C1	S2	180.0	180.3
H8	C8	C1	S1	360.0	0.2
H11	C11	C8	C1	180.0	180.0
C8	C11	H11	C10	180.0	180.0
H11	C11	C8	H8	0.0	359.7
H11	C11	C10	S2	180.0	180.0
H11	C11	C10	H10	360.0	0.1
C11	C10	H10	S2	180.0	179.9
H10	C10	C11	H11	360.0	0.1
H10	C10	S2	C1	180.0	180.0
S1	N	H	C9	231.3	180.0
H	N	C9	C6	323.2	284.9
H	N	C9	C16	143.3	104.7
H6	C6	C9	C16	179.9	180.2
C9	C6	H6	C2	180.0	180.0
H6	C6	C2	C5	180.0	180.0
H6	C6	C2	C3	0.1	360.0
C9	C16	H16	C15	180.0	180.1
H16	C16	C15	C5	180.0	180.1
H16	C16	C15	H15	360.0	0.0
C16	C15	H15	C5	180.0	180.0
H15	C15	C16	H16	360.0	0.0
H15	C15	C5	O3	0.0	0.0
H15	C15	C5	C2	179.9	180.3
H3	O3	C5	C2	0.1	269.7
H17	C17	C4	C12	179.9	180.0
C4	C17	H17	C19	180.0	180.0
H17	C17	C19	C20	180.1	180.0
H17	C17	C19	H19	0.1	0.0
C17	C19	H19	C20	180.0	180.0
H19	C19	C17	H17	0.1	0.0
H19	C19	C20	C18	180.0	180.0
H19	C19	C20	H20	360.0	360.0
C19	C20	H20	C18	180.0	180.0
H20	C20	C19	H19	360.0	360.0
H20	C20	C18	C12	180.0	180.0
H20	C20	C18	H18	359.9	0.1
C20	C18	H18	C12	180.0	179.9
H18	C18	C20	H20	359.9	0.1
H18	C18	C12	C14	0.1	360.0
C12	C14	H14	C13	180.0	180.0
H14	C14	C13	C7	180.0	179.7
H14	C14	C13	H13	0.0	0.0
C14	C13	H13	C7	180.0	179.7
H13	C13	C14	H14	0.0	0.0
H13	C13	C7	O4	360.0	360.0