PDB Chemical Component 2D3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2D3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAA |
OAI |
1.353 |
1.452 |
| OAI |
CAK |
1.309 |
1.348 |
| CAK |
OAC |
1.203 |
1.215 |
| CAK |
CAO |
1.499 |
1.471 |
| CAO |
CAL |
1.352 |
1.380 |
| CAO |
CAN |
1.365 |
1.467 |
| CAL |
CAB |
1.491 |
1.507 |
| CAL |
NAG |
1.281 |
1.342 |
| NAG |
NAH |
1.198 |
1.397 |
| NAH |
CAN |
1.294 |
1.315 |
| CAN |
CAM |
1.384 |
1.477 |
| CAM |
CAE |
1.295 |
1.369 |
| CAM |
OAJ |
1.201 |
1.346 |
| CAE |
CAD |
1.292 |
1.410 |
| CAD |
NAF |
1.297 |
1.304 |
| NAF |
OAJ |
1.197 |
1.209 |
| CAA |
HAA1 |
1.101 |
1.090 |
| CAA |
HAA2 |
1.100 |
1.089 |
| CAA |
HAA3 |
1.100 |
1.090 |
| CAB |
HAB1 |
1.101 |
1.090 |
| CAB |
HAB2 |
1.100 |
1.091 |
| CAB |
HAB3 |
1.100 |
1.091 |
| NAG |
HAG |
1.000 |
0.970 |
| CAE |
HAE |
1.080 |
1.079 |
| CAD |
HAD |
1.081 |
1.080 |
Bond Angles for 2D3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAA |
OAI |
CAK |
113.7 |
117.0 |
| OAI |
CAA |
HAA1 |
109.5 |
109.5 |
| OAI |
CAA |
HAA2 |
109.5 |
109.4 |
| OAI |
CAA |
HAA3 |
109.5 |
109.4 |
| OAI |
CAK |
OAC |
118.6 |
120.0 |
| OAI |
CAK |
CAO |
118.3 |
120.0 |
| OAC |
CAK |
CAO |
123.1 |
120.0 |
| CAK |
CAO |
CAL |
126.0 |
126.8 |
| CAK |
CAO |
CAN |
130.1 |
126.9 |
| CAL |
CAO |
CAN |
104.0 |
106.3 |
| CAO |
CAL |
CAB |
129.2 |
126.1 |
| CAO |
CAL |
NAG |
107.6 |
107.9 |
| CAO |
CAN |
NAH |
105.5 |
107.0 |
| CAO |
CAN |
CAM |
128.5 |
126.5 |
| CAB |
CAL |
NAG |
123.2 |
126.0 |
| CAL |
CAB |
HAB1 |
109.5 |
109.5 |
| CAL |
CAB |
HAB2 |
109.4 |
109.5 |
| CAL |
CAB |
HAB3 |
109.4 |
109.4 |
| CAL |
NAG |
NAH |
110.6 |
109.7 |
| CAL |
NAG |
HAG |
124.7 |
125.2 |
| NAG |
NAH |
CAN |
112.4 |
109.0 |
| NAH |
NAG |
HAG |
124.7 |
125.1 |
| NAH |
CAN |
CAM |
126.0 |
126.5 |
| CAN |
CAM |
CAE |
130.5 |
126.9 |
| CAN |
CAM |
OAJ |
120.3 |
126.9 |
| CAE |
CAM |
OAJ |
109.2 |
106.1 |
| CAM |
CAE |
CAD |
104.9 |
103.9 |
| CAM |
CAE |
HAE |
127.5 |
128.1 |
| CAM |
OAJ |
NAF |
111.5 |
111.5 |
| CAE |
CAD |
NAF |
105.9 |
106.6 |
| CAD |
CAE |
HAE |
127.6 |
128.1 |
| CAE |
CAD |
HAD |
127.0 |
126.7 |
| CAD |
NAF |
OAJ |
108.5 |
111.9 |
| NAF |
CAD |
HAD |
127.0 |
126.6 |
| HAA1 |
CAA |
HAA2 |
109.4 |
109.5 |
| HAA1 |
CAA |
HAA3 |
109.5 |
109.5 |
| HAA2 |
CAA |
HAA3 |
109.5 |
109.5 |
| HAB1 |
CAB |
HAB2 |
109.5 |
109.5 |
| HAB1 |
CAB |
HAB3 |
109.5 |
109.5 |
| HAB2 |
CAB |
HAB3 |
109.5 |
109.5 |
Torsion Angles for 2D3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAA |
OAI |
CAK |
OAC |
36.1 |
360.0 |
| CAA |
OAI |
CAK |
CAO |
216.7 |
180.0 |
| HAA1 |
CAA |
OAI |
HAA2 |
240.0 |
240.0 |
| HAA1 |
CAA |
OAI |
HAA3 |
120.0 |
120.0 |
| HAA2 |
CAA |
OAI |
HAA3 |
240.0 |
240.0 |
| CAK |
OAI |
CAA |
HAA1 |
180.0 |
180.0 |
| CAK |
OAI |
CAA |
HAA2 |
300.0 |
300.0 |
| CAK |
OAI |
CAA |
HAA3 |
60.0 |
60.0 |
| OAC |
CAK |
OAI |
CAO |
179.3 |
179.9 |
| OAI |
CAK |
CAO |
CAL |
17.7 |
269.9 |
| OAI |
CAK |
CAO |
CAN |
198.5 |
89.7 |
| OAI |
CAK |
OAC |
CAO |
180.7 |
180.1 |
| OAC |
CAK |
CAO |
CAL |
198.4 |
90.0 |
| OAC |
CAK |
CAO |
CAN |
19.2 |
269.7 |
| OAI |
CAK |
CAO |
OAC |
179.3 |
179.9 |
| CAL |
CAO |
CAK |
CAN |
179.1 |
180.3 |
| CAK |
CAO |
CAL |
CAB |
0.1 |
0.1 |
| CAK |
CAO |
CAL |
NAG |
180.3 |
180.0 |
| CAK |
CAO |
CAN |
NAH |
179.4 |
179.9 |
| CAK |
CAO |
CAN |
CAM |
359.8 |
0.0 |
| CAK |
CAO |
CAL |
CAN |
180.7 |
179.8 |
| CAL |
CAO |
CAN |
NAH |
0.1 |
359.6 |
| CAL |
CAO |
CAN |
CAM |
180.5 |
179.8 |
| CAB |
CAL |
CAO |
NAG |
179.8 |
180.1 |
| CAO |
CAL |
CAB |
HAB1 |
90.1 |
90.0 |
| CAO |
CAL |
CAB |
HAB2 |
210.1 |
210.0 |
| CAO |
CAL |
CAB |
HAB3 |
330.1 |
329.9 |
| CAO |
CAL |
NAG |
NAH |
0.6 |
0.0 |
| CAO |
CAL |
NAG |
HAG |
180.6 |
180.0 |
| CAK |
CAO |
CAN |
CAL |
179.3 |
180.2 |
| CAN |
CAO |
CAL |
CAB |
179.4 |
180.3 |
| CAN |
CAO |
CAL |
NAG |
359.6 |
0.2 |
| NAG |
NAH |
CAN |
CAO |
0.2 |
0.4 |
| NAH |
CAN |
CAO |
CAM |
179.6 |
179.8 |
| CAO |
CAN |
CAM |
CAE |
347.0 |
145.0 |
| CAO |
CAN |
CAM |
OAJ |
167.9 |
324.7 |
| CAB |
CAL |
CAO |
CAN |
179.4 |
180.3 |
| CAO |
CAL |
CAB |
NAG |
180.2 |
179.9 |
| CAB |
CAL |
NAG |
NAH |
180.7 |
179.9 |
| CAB |
CAL |
NAG |
HAG |
0.8 |
359.9 |
| HAB1 |
CAB |
CAL |
HAB2 |
240.0 |
240.0 |
| HAB1 |
CAB |
CAL |
HAB3 |
120.0 |
120.0 |
| HAB2 |
CAB |
CAL |
HAB3 |
240.0 |
240.0 |
| NAG |
CAL |
CAO |
CAN |
359.6 |
0.2 |
| CAO |
CAL |
NAG |
CAB |
179.8 |
180.1 |
| NAG |
CAL |
CAB |
HAB1 |
269.9 |
270.1 |
| NAG |
CAL |
CAB |
HAB2 |
29.9 |
30.1 |
| NAG |
CAL |
CAB |
HAB3 |
149.9 |
150.1 |
| CAL |
NAG |
NAH |
CAN |
359.5 |
359.7 |
| NAH |
NAG |
CAL |
HAG |
180.0 |
180.1 |
| CAO |
CAN |
NAH |
NAG |
0.2 |
0.4 |
| CAL |
NAG |
NAH |
HAG |
180.0 |
179.9 |
| NAG |
NAH |
CAN |
CAM |
179.8 |
180.2 |
| CAO |
CAN |
NAH |
CAM |
180.4 |
180.2 |
| CAN |
NAH |
NAG |
HAG |
179.5 |
179.8 |
| NAH |
CAN |
CAM |
CAE |
167.5 |
325.2 |
| NAH |
CAN |
CAM |
OAJ |
348.4 |
144.9 |
| CAO |
CAN |
CAM |
NAH |
179.5 |
179.8 |
| CAE |
CAM |
CAN |
OAJ |
179.1 |
180.3 |
| CAN |
CAM |
CAE |
CAD |
180.2 |
180.0 |
| CAN |
CAM |
CAE |
HAE |
0.3 |
359.9 |
| CAN |
CAM |
OAJ |
NAF |
179.2 |
179.8 |
| CAN |
CAM |
CAE |
OAJ |
180.8 |
179.7 |
| CAE |
CAM |
OAJ |
NAF |
359.8 |
359.6 |
| CAM |
CAE |
CAD |
NAF |
1.0 |
0.0 |
| CAD |
CAE |
CAM |
HAE |
180.0 |
180.0 |
| CAM |
CAE |
CAD |
HAD |
181.0 |
180.0 |
| CAN |
CAM |
OAJ |
CAE |
179.3 |
180.3 |
| OAJ |
CAM |
CAE |
CAD |
359.4 |
0.2 |
| OAJ |
CAM |
CAE |
HAE |
179.5 |
180.2 |
| CAD |
NAF |
OAJ |
CAM |
0.8 |
0.5 |
| CAD |
CAE |
CAM |
OAJ |
359.4 |
0.2 |
| CAM |
CAE |
CAD |
HAE |
180.0 |
180.0 |
| CAE |
CAD |
NAF |
OAJ |
358.9 |
359.7 |
| NAF |
CAD |
CAE |
HAD |
180.0 |
180.0 |
| CAM |
OAJ |
NAF |
CAD |
0.8 |
0.5 |
| NAF |
CAD |
CAE |
HAE |
181.0 |
180.0 |
| CAE |
CAD |
NAF |
HAD |
180.0 |
180.0 |
| OAJ |
NAF |
CAD |
HAD |
178.9 |
179.8 |
| HAA1 |
CAA |
OAI |
CAK |
180.0 |
180.0 |
| OAI |
CAA |
HAA1 |
HAA2 |
120.0 |
120.0 |
| OAI |
CAA |
HAA1 |
HAA3 |
240.0 |
240.1 |
| HAA2 |
CAA |
HAA1 |
HAA3 |
120.0 |
120.1 |
| HAA2 |
CAA |
OAI |
CAK |
300.0 |
300.0 |
| OAI |
CAA |
HAA2 |
HAA1 |
240.0 |
240.0 |
| OAI |
CAA |
HAA2 |
HAA3 |
120.0 |
119.9 |
| HAA1 |
CAA |
HAA2 |
HAA3 |
240.0 |
239.9 |
| HAA3 |
CAA |
OAI |
CAK |
60.0 |
60.0 |
| OAI |
CAA |
HAA3 |
HAA1 |
120.0 |
120.0 |
| OAI |
CAA |
HAA3 |
HAA2 |
240.0 |
240.0 |
| HAA1 |
CAA |
HAA3 |
HAA2 |
120.0 |
120.1 |
| HAB1 |
CAB |
CAL |
NAG |
269.9 |
270.1 |
| CAL |
CAB |
HAB1 |
HAB2 |
120.0 |
120.0 |
| CAL |
CAB |
HAB1 |
HAB3 |
240.0 |
240.0 |
| HAB2 |
CAB |
HAB1 |
HAB3 |
120.0 |
120.0 |
| HAB2 |
CAB |
CAL |
NAG |
29.9 |
30.1 |
| CAL |
CAB |
HAB2 |
HAB1 |
240.0 |
239.9 |
| CAL |
CAB |
HAB2 |
HAB3 |
119.9 |
119.9 |
| HAB1 |
CAB |
HAB2 |
HAB3 |
240.0 |
240.0 |
| HAB3 |
CAB |
CAL |
NAG |
149.9 |
150.1 |
| CAL |
CAB |
HAB3 |
HAB1 |
120.0 |
120.0 |
| CAL |
CAB |
HAB3 |
HAB2 |
240.1 |
240.0 |
| HAB1 |
CAB |
HAB3 |
HAB2 |
120.0 |
120.0 |
| CAL |
NAG |
HAG |
NAH |
180.0 |
180.1 |
| HAG |
NAG |
NAH |
CAN |
179.5 |
179.8 |
| HAE |
CAE |
CAM |
OAJ |
179.5 |
180.2 |
| CAM |
CAE |
HAE |
CAD |
180.0 |
180.0 |
| HAE |
CAE |
CAD |
NAF |
181.0 |
180.0 |
| HAE |
CAE |
CAD |
HAD |
1.0 |
360.0 |
| CAE |
CAD |
HAD |
NAF |
180.0 |
180.1 |
| HAD |
CAD |
CAE |
HAE |
1.0 |
360.0 |
| HAD |
CAD |
NAF |
OAJ |
178.9 |
179.8 |