Atom Nomenclature for 2CV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2CV

Atom Name (V3) Atom Name (V2)
C9 C9
C12 C12
C15 C15
C18 C18
C21 C21
C24 C24
C27 C27
C30 C30
N33 N33
O34 O34
C35 C35
C36 C36
C37 C37
C40 C40
C41 C41
C42 C42
C43 C43
O44 O44
O47 O47
O49 O49
O51 O51
O53 O53
C60 C60
O63 O63
C1 C1
C0 C0
H91C H91C
H92C H92C
H121 H121
H122 H122
H11C H11C
H12C H12C
H151 H151
H152 H152
H181 H181
H182 H182
H211 H211
H212 H212
H241 H241
H242 H242
H271 H271
H272 H272
H351 H351
H352 H352
H361 H361
H362 H362
H601 H601
H602 H602
H37 H37
H40 H40
H47 H47
H41 H41
H49 H49
H42 H42
H51 H51
H431 H431
H432 H432
H53 H53
H44 H44
H63 H63
H01C H01C
H02C H02C
H03C H03C