PDB Chemical Component 2BT

Ideal Model

Chemical Description

Name 2'-O-BUTYL-THYMIDINE
Synonyms 2'-O-BUTYL-5-METHYLURIDINE
Formula C14 H23 N2 O9 P
Formal charge 0
Molecular weight 394.314 g/mol
Component type RNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 49
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 50
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-butyl-5-methyluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-4-butoxy-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=O
SMILES (CACTVS) CCCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O
Stereo SMILES (OpenEye) CCCCO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C)COP(=O)(O)O)O
InChI descriptor InChI=1S/C14H23N2O9P/c1-3-4-5-23-11-10(17)9(7-24-26(20,21)22)25-13(11)16-6-8(2)12(18)15-14(16)19/h6,9-11,13,17H,3-5,7H2,1-2H3,(H,15,18,19)(H2,20,21,22)/t9-,10-,11-,13-/m1/s1
InChIKey descriptor WSAMAMLAATZRPR-PRULPYPASA-N

Status Information

Last modified 2021-03-01
Created 2004-12-16
Release status REL
Model PDB code 1WV5
Processing site RCSB