PDB Chemical Component 2BT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2BT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP3 1.449 1.617
P OP2 1.479 1.618
P O5' 1.598 1.619
P OP1   1.501
OP3 HOP3 0.949 0.980
OP2 HOP2 0.950 0.980
O5' C5' 1.431 1.416
C5' C4' 1.514 1.523
C5' H5' 1.114 1.092
C5' H5'' 1.115 1.091
C4' O4' 1.421 1.444
C4' C3' 1.511 1.523
C4' H4' 1.114 1.095
O4' C1' 1.404 1.437
C1' N1 1.481 1.435
C1' C2' 1.523 1.519
C1' H1' 1.114 1.094
N1 C2 1.371 1.413
N1 C6 1.367 1.390
C2 O2 1.214 1.232
C2 N3 1.365 1.400
N3 C4 1.368 1.386
N3 HN3 1.019 1.017
C4 O4 1.220 1.229
C4 C5 1.413 1.487
C5 C5M 1.477 1.495
C5 C6 1.330 1.339
C5M H71 1.114 1.089
C5M H72 1.115 1.089
C5M H73 1.114 1.090
C6 H6 1.103 1.086
C2' O2' 1.434 1.413
C2' C3' 1.525 1.514
C2' H2' 1.115 1.097
O2' CA' 1.416 1.424
CA' CB' 1.506 1.522
CA' HA'1 1.116 1.095
CA' HA'2 1.116 1.095
CB' CC' 1.529 1.527
CB' HB'1 1.114 1.096
CB' HB'2 1.114 1.097
CC' CD'   1.520
CC' HC'1 1.115 1.097
CC' HC'2 1.115 1.096
C3' O3' 1.420 1.427
C3' H3' 1.116 1.093
O3' HO3' 0.950 0.969
CD' HD'1   1.095
CD' HD'2   1.094
CD' HD'3   1.095

Bond Angles for 2BT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP3 P OP2 119.7 103.3
OP3 P O5' 107.4 103.8
OP3 P OP1   115.3
P OP3 HOP3 119.7 119.0
OP2 P O5' 105.8 102.9
OP2 P OP1   114.9
P OP2 HOP2 119.7 119.0
O5' P OP1   115.0
P O5' C5' 121.7 118.5
O5' C5' C4' 113.4 108.6
O5' C5' H5' 110.7 109.2
O5' C5' H5'' 110.7 109.3
C4' C5' H5' 110.8 110.1
C4' C5' H5'' 110.8 110.1
C5' C4' O4' 107.5 108.2
C5' C4' C3' 119.3 113.3
C5' C4' H4' 102.1 109.3
H5' C5' H5'' 99.5 109.6
O4' C4' C3' 102.2 105.9
O4' C4' H4' 119.3 107.7
C4' O4' C1' 108.6 109.2
C3' C4' H4' 107.4 112.2
C4' C3' C2' 99.1 102.1
C4' C3' O3' 111.3 107.9
C4' C3' H3' 116.7 114.5
O4' C1' N1 108.0 109.0
O4' C1' C2' 106.9 106.5
O4' C1' H1' 114.3 108.9
N1 C1' C2' 115.3 112.5
N1 C1' H1' 105.7 107.3
C1' N1 C2 118.6 121.3
C1' N1 C6 120.3 118.5
C2' C1' H1' 106.9 112.6
C1' C2' O2' 112.6 112.6
C1' C2' C3' 96.7 102.0
C1' C2' H2' 117.5 111.1
C2 N1 C6 121.1 120.2
N1 C2 O2 123.3 123.8
N1 C2 N3 115.1 115.1
N1 C6 C5 122.5 124.5
N1 C6 H6 120.2 114.7
O2 C2 N3 121.6 121.1
C2 N3 C4 126.3 127.0
C2 N3 HN3 116.7 116.4
C4 N3 HN3 117.0 116.6
N3 C4 O4 121.0 123.6
N3 C4 C5 115.5 114.8
O4 C4 C5 123.3 121.6
C4 C5 C5M 116.3 118.0
C4 C5 C6 119.4 118.4
C5M C5 C6 121.4 123.6
C5 C5M H71 116.3 109.7
C5 C5M H72 109.7 109.8
C5 C5M H73 109.7 109.7
C5 C6 H6 117.3 120.7
H71 C5M H72 109.7 109.4
H71 C5M H73 109.8 109.4
H72 C5M H73 100.4 108.9
O2' C2' C3' 114.6 112.3
O2' C2' H2' 100.7 108.6
C2' O2' CA' 116.1 111.9
C3' C2' H2' 115.6 110.1
C2' C3' O3' 114.3 110.3
C2' C3' H3' 113.8 114.0
O2' CA' CB' 107.6 108.8
O2' CA' HA'1 112.9 108.5
O2' CA' HA'2 112.9 108.5
CB' CA' HA'1 112.9 111.0
CB' CA' HA'2 112.9 111.0
CA' CB' CC' 110.4 111.6
CA' CB' HB'1 111.8 109.3
CA' CB' HB'2 111.8 109.4
HA'1 CA' HA'2 97.5 109.0
CC' CB' HB'1 111.9 110.3
CC' CB' HB'2 111.9 110.2
CB' CC' CD'   111.5
CB' CC' HC'1 151.3 109.8
CB' CC' HC'2 151.2 109.9
HB'1 CB' HB'2 98.6 105.8
CD' CC' HC'1   109.2
CD' CC' HC'2   109.1
CC' CD' HD'1   111.0
CC' CD' HD'2   111.1
CC' CD' HD'3   110.3
HC'1 CC' HC'2 46.3 107.2
O3' C3' H3' 102.2 107.8
C3' O3' HO3' 111.2 106.4
HD'1 CD' HD'2   108.3
HD'1 CD' HD'3   108.1
HD'2 CD' HD'3   108.1

Torsion Angles for 2BT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP3 O5' 239.5 107.1
OP2 P OP3 OP1   233.8
OP3 P OP2 HOP2 180.0 78.5
O5' P OP3 OP1   126.6
OP3 P O5' C5' 61.3 53.2
OP3 P OP2 O5' 121.3 252.3
OP3 P OP2 OP1   126.5
OP2 P OP3 HOP3 180.0 282.5
O5' P OP2 OP1   234.2
OP2 P O5' C5' 190.2 305.8
OP3 P O5' OP2 231.1 107.4
OP3 P O5' OP1   233.1
O5' P OP3 HOP3 300.4 175.4
OP2 P O5' OP1   125.8
O5' P OP2 HOP2 58.7 186.2
P O5' C5' C4' 158.9 180.0
P O5' C5' H5' 284.2 300.1
P O5' C5' H5'' 33.6 59.9
OP3 P OP1 OP2   240.0
OP3 P OP1 O5'   120.7
OP1 P OP3 HOP3   48.7
OP2 P OP1 O5'   240.7
OP1 P OP2 HOP2   312.0
OP1 P O5' C5'   180.1
HOP3 OP3 P OP2 180.0 282.5
HOP3 OP3 P O5' 300.4 175.4
HOP3 OP3 P OP1   48.7
HOP2 OP2 P O5' 58.7 186.2
HOP2 OP2 P OP1   312.0
C5' O5' P OP1   180.1
C4' C5' O5' H5' 234.7 239.9
C4' C5' O5' H5'' 125.3 120.1
O5' C5' C4' O4' 289.2 62.4
O5' C5' C4' C3' 44.8 179.5
O5' C5' C4' H4' 162.9 305.4
H5' C5' O5' H5'' 250.6 240.2
O5' C5' C4' H5' 125.2 119.5
O5' C5' C4' H5'' 234.8 240.4
H5' C5' C4' H5'' 109.5 120.9
O4' C4' C5' C3' 244.4 242.9
O4' C4' C5' H4' 126.3 117.0
C5' C4' O4' C1' 151.8 109.0
C3' C4' C5' H4' 241.8 234.1
C5' C4' C3' C2' 194.9 273.1
C5' C4' C3' O3' 74.3 156.8
C5' C4' C3' H3' 317.5 36.8
O5' C5' H5' C4' 233.3 240.8
O5' C5' H5' H5'' 116.6 119.6
C4' C5' H5' H5'' 243.3 238.8
H5' C5' C4' O4' 164.0 302.9
H5' C5' C4' C3' 279.5 60.0
H5' C5' C4' H4' 37.7 185.9
O5' C5' H5'' C4' 126.7 119.2
O5' C5' H5'' H5' 243.4 240.4
C4' C5' H5'' H5' 116.7 121.2
H5'' C5' C4' O4' 54.4 182.0
H5'' C5' C4' C3' 170.0 299.1
H5'' C5' C4' H4' 288.2 65.0
O4' C4' C5' H5' 164.0 302.9
O4' C4' C5' H5'' 54.4 182.0
C5' C4' O4' C3' 126.4 121.7
C5' C4' O4' H4' 244.7 241.9
C3' C4' O4' H4' 118.2 120.2
O4' C4' C3' C2' 313.3 31.5
O4' C4' C3' O3' 192.7 275.3
O4' C4' C3' H3' 75.9 155.2
C4' O4' C1' N1 241.9 227.1
C4' O4' C1' C2' 6.5 348.7
C4' O4' C1' H1' 124.6 110.3
C3' C4' C5' H5' 279.5 60.0
C3' C4' C5' H5'' 170.0 299.1
C5' C4' C3' O4' 241.7 241.6
C5' C4' C3' H4' 115.3 124.4
O4' C4' C3' H4' 233.7 242.8
C3' C4' O4' C1' 25.3 347.2
C1' C2' C3' C4' 48.0 322.9
O2' C2' C3' C4' 289.3 202.0
C4' C3' C2' H2' 172.9 80.9
C2' C3' C4' O3' 120.6 116.3
C2' C3' C4' H3' 237.4 236.3
O3' C3' C4' H3' 116.8 120.1
C4' C3' O3' HO3' 180.1 15.2
H4' C4' C5' H5' 37.7 185.9
H4' C4' C5' H5'' 288.2 65.0
C5' C4' H4' O4' 118.2 117.3
C5' C4' H4' C3' 233.7 233.5
O4' C4' H4' C3' 115.5 116.2
H4' C4' O4' C1' 267.1 227.0
H4' C4' C3' C2' 79.6 148.7
H4' C4' C3' O3' 319.0 32.5
H4' C4' C3' H3' 202.2 272.4
C1' O4' C4' C3' 25.3 347.2
C1' O4' C4' H4' 267.1 227.0
N1 C1' O4' C2' 235.4 238.4
N1 C1' O4' H1' 117.3 116.8
O4' C1' N1 C2 200.5 212.2
O4' C1' N1 C6 18.4 32.3
C2' C1' O4' H1' 242.0 238.4
O4' C1' C2' O2' 85.5 151.3
O4' C1' C2' C3' 325.2 30.7
O4' C1' C2' H2' 201.8 273.4
O4' C1' N1 C2' 119.5 117.9
O4' C1' N1 H1' 237.3 242.3
C2' C1' N1 H1' 117.8 124.4
N1 C1' C2' O2' 205.6 270.6
N1 C1' C2' C3' 85.3 150.0
N1 C1' C2' H2' 321.8 32.7
C2 N1 C1' C6 182.1 179.9
C1' N1 C2 O2 358.5 0.1
C1' N1 C2 N3 177.8 180.0
C1' N1 C6 C5 181.0 180.0
C1' N1 C6 H6 1.0 360.0
C4' C3' C2' C1' 48.0 322.9
O4' C1' C2' N1 239.9 240.7
O4' C1' C2' H1' 122.8 119.3
N1 C1' C2' H1' 242.9 238.6
C2' C1' N1 C2 81.0 94.3
C2' C1' N1 C6 258.9 274.4
O2' C2' C1' C3' 120.2 120.6
O2' C2' C1' H2' 243.7 237.9
C1' C2' O2' CA' 73.8 185.5
C3' C2' C1' H2' 123.5 117.3
C1' C2' C3' O3' 166.4 77.4
C1' C2' C3' H3' 283.4 198.9
O4' C1' H1' N1 118.6 117.8
O4' C1' H1' C2' 241.9 242.1
N1 C1' H1' C2' 123.3 124.3
H1' C1' N1 C2 323.2 329.9
H1' C1' N1 C6 141.2 150.0
H1' C1' C2' O2' 322.7 32.1
H1' C1' C2' C3' 202.5 271.5
H1' C1' C2' H2' 79.0 154.2
C2 N1 C1' C2' 81.0 94.3
C2 N1 C1' H1' 323.2 329.9
C1' N1 C2 C6 177.9 180.1
C2 N1 C6 C5 358.9 0.0
C2 N1 C6 H6 178.9 180.0
O2 C2 N1 N3 180.7 180.1
N1 C2 N3 C4 2.9 360.0
N1 C2 N3 HN3 183.0 180.1
C6 N1 C1' C2' 258.9 274.4
C6 N1 C1' H1' 141.2 150.0
C1' N1 C6 C2 182.1 179.9
C6 N1 C2 O2 180.6 180.0
C6 N1 C2 N3 359.9 360.0
C4 C5 C6 N1 359.8 0.0
C5M C5 C6 N1 160.0 180.0
C5 C6 N1 H6 180.0 180.0
O2 C2 N1 C6 180.6 180.0
N1 C2 O2 N3 179.3 179.9
O2 C2 N3 C4 182.3 179.9
O2 C2 N3 HN3 2.3 0.0
N3 C2 N1 C6 359.9 360.0
N1 C2 N3 O2 180.7 180.1
C4 N3 C2 HN3 180.0 179.9
C2 N3 C4 O4 180.6 180.1
C2 N3 C4 C5 355.8 0.1
C2 N3 C4 HN3 180.0 180.1
O4 C4 N3 C5 184.8 180.0
N3 C4 C5 C5M 201.4 180.0
N3 C4 C5 C6 2.6 360.0
C2 N3 HN3 C4 180.0 179.9
HN3 N3 C4 O4 0.6 360.0
HN3 N3 C4 C5 175.8 180.0
O4 C4 N3 HN3 0.6 360.0
N3 C4 O4 C5 174.8 180.0
O4 C4 C5 C5M 16.5 360.0
O4 C4 C5 C6 177.7 180.0
N1 C6 C5 C4 359.8 0.0
C5 C4 N3 HN3 175.8 180.0
N3 C4 C5 O4 184.9 180.0
C5M C5 C4 C6 198.8 180.0
C4 C5 C5M H71 180.1 244.2
C4 C5 C5M H72 305.2 124.0
C4 C5 C5M H73 54.7 4.4
C4 C5 C6 H6 179.8 180.0
N1 C6 C5 C5M 160.0 180.0
C4 C5 C5M C6 160.8 180.0
C5M C5 C6 H6 340.0 360.0
H71 C5M C5 H72 234.8 120.2
H71 C5M C5 H73 125.4 239.8
H72 C5M C5 H73 250.6 119.6
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C5M 199.8 180.0
C6 C5 C5M H71 19.3 64.2
C6 C5 C5M H72 144.5 304.0
C6 C5 C5M H73 253.9 184.4
H71 C5M C5 C6 19.3 64.2
C5 C5M H71 H72 125.2 239.5
C5 C5M H71 H73 234.7 120.4
H72 C5M H71 H73 109.4 240.8
H72 C5M C5 C6 144.5 304.0
C5 C5M H72 H71 231.1 120.4
C5 C5M H72 H73 115.5 239.9
H71 C5M H72 H73 244.4 119.5
H73 C5M C5 C6 253.9 184.4
C5 C5M H73 H71 129.0 239.6
C5 C5M H73 H72 244.5 120.2
H71 C5M H73 H72 115.5 240.5
N1 C6 H6 C5 180.0 180.0
C4' C3' C2' O2' 289.3 202.0
O2' C2' C1' H1' 322.7 32.1
C1' C2' O2' C3' 250.7 245.5
C1' C2' O2' H2' 125.9 123.5
C3' C2' O2' H2' 235.2 238.0
O2' C2' C3' O3' 47.7 316.5
O2' C2' C3' H3' 164.7 78.0
C2' O2' CA' CB' 166.1 180.8
C2' O2' CA' HA'1 291.4 60.0
C2' O2' CA' HA'2 40.8 301.7
C2' C3' C4' H4' 79.6 148.7
C4' C3' C2' O3' 241.6 245.5
C4' C3' C2' H3' 124.7 124.0
C3' C2' C1' H1' 202.5 271.5
C1' C2' C3' O2' 118.7 120.8
C1' C2' C3' H2' 235.1 242.0
O2' C2' C3' H2' 116.5 121.1
C3' C2' O2' CA' 183.1 300.0
O3' C3' C2' H3' 243.0 238.5
C2' C3' O3' HO3' 68.9 264.4
H2' C2' C1' H1' 79.0 154.2
C1' C2' H2' O2' 237.4 235.6
C1' C2' H2' C3' 113.3 112.3
O2' C2' H2' C3' 235.9 236.7
H2' C2' O2' CA' 307.8 62.0
H2' C2' C3' O3' 291.3 195.4
H2' C2' C3' H3' 48.2 316.9
CA' O2' C2' C3' 183.1 300.0
CA' O2' C2' H2' 307.8 62.0
CB' CA' O2' HA'1 234.7 120.8
CB' CA' O2' HA'2 125.3 239.1
O2' CA' CB' CC' 206.1 180.6
O2' CA' CB' HB'1 331.3 58.4
O2' CA' CB' HB'2 80.8 302.9
HA'1 CA' O2' HA'2 250.6 118.3
O2' CA' CB' HA'1 125.3 240.7
O2' CA' CB' HA'2 234.7 119.3
HA'1 CA' CB' HA'2 109.4 238.7
CC' CB' CA' HB'1 234.7 122.3
CC' CB' CA' HB'2 125.3 237.7
CA' CB' CC' CD'   178.2
CA' CB' CC' HC'1 165.2 57.1
CA' CB' CC' HC'2 274.8 299.4
HB'1 CB' CA' HB'2 250.5 115.5
O2' CA' HA'1 CB' 237.6 119.5
O2' CA' HA'1 HA'2 118.8 242.0
CB' CA' HA'1 HA'2 241.2 122.5
HA'1 CA' CB' CC' 80.8 300.0
HA'1 CA' CB' HB'1 206.0 177.7
HA'1 CA' CB' HB'2 315.5 62.2
O2' CA' HA'2 CB' 122.4 240.5
O2' CA' HA'2 HA'1 241.2 118.0
CB' CA' HA'2 HA'1 118.8 237.5
HA'2 CA' CB' CC' 331.4 61.3
HA'2 CA' CB' HB'1 96.6 299.0
HA'2 CA' CB' HB'2 206.1 183.6
CC' CB' CA' HA'1 80.8 300.0
CC' CB' CA' HA'2 331.4 61.3
CA' CB' CC' HB'1 125.2 238.3
CA' CB' CC' HB'2 234.8 121.8
HB'1 CB' CC' HB'2 109.5 243.5
CD' CC' CB' HC'1   121.1
CD' CC' CB' HC'2   238.9
CB' CC' CD' HD'1   299.8
CB' CC' CD' HD'2   60.3
CB' CC' CD' HD'3   180.1
HC'1 CC' CB' HC'2 250.4 117.7
HB'1 CB' CA' HA'1 206.0 177.7
HB'1 CB' CA' HA'2 96.6 299.0
CA' CB' HB'1 CC' 235.5 123.1
CA' CB' HB'1 HB'2 117.7 242.3
CC' CB' HB'1 HB'2 242.2 119.2
HB'1 CB' CC' CD'   300.0
HB'1 CB' CC' HC'1 40.0 178.8
HB'1 CB' CC' HC'2 149.5 61.1
HB'2 CB' CA' HA'1 315.5 62.2
HB'2 CB' CA' HA'2 206.1 183.6
CA' CB' HB'2 CC' 124.5 236.9
CA' CB' HB'2 HB'1 242.3 117.7
CC' CB' HB'2 HB'1 117.8 240.8
HB'2 CB' CC' CD'   56.5
HB'2 CB' CC' HC'1 290.5 295.3
HB'2 CB' CC' HC'2 40.0 177.6
CD' CC' CB' HB'1   300.0
CD' CC' CB' HB'2   56.5
CB' CC' CD' HC'1   238.5
CB' CC' CD' HC'2   121.6
HC'1 CC' CD' HC'2   243.1
HD'1 CD' CC' HD'2   239.5
HD'1 CD' CC' HD'3   119.7
HD'2 CD' CC' HD'3   240.2
HC'1 CC' CB' HB'1 40.0 178.8
HC'1 CC' CB' HB'2 290.5 295.3
CB' CC' HC'1 CD'   122.5
CB' CC' HC'1 HC'2 141.1 240.6
CD' CC' HC'1 HC'2   118.1
HC'1 CC' CD' HD'1   61.3
HC'1 CC' CD' HD'2   181.9
HC'1 CC' CD' HD'3   301.6
HC'2 CC' CB' HB'1 149.5 61.1
HC'2 CC' CB' HB'2 40.0 177.6
CB' CC' HC'2 CD'   237.5
CB' CC' HC'2 HC'1 218.8 119.3
CD' CC' HC'2 HC'1   241.9
HC'2 CC' CD' HD'1   178.3
HC'2 CC' CD' HD'2   298.8
HC'2 CC' CD' HD'3   58.5
O3' C3' C4' H4' 319.0 32.5
C4' C3' O3' C2' 111.2 110.7
C4' C3' O3' H3' 234.6 235.8
O3' C3' C2' H2' 291.3 195.4
C2' C3' O3' H3' 123.5 125.1
H3' C3' C4' H4' 202.2 272.4
C4' C3' H3' C2' 245.5 243.0
C4' C3' H3' O3' 121.7 120.1
H3' C3' C2' H2' 48.2 316.9
C2' C3' H3' O3' 236.2 237.2
H3' C3' O3' HO3' 305.4 139.4
HO3' O3' C3' H3' 305.4 139.4
HD'1 CD' CC' HC'1   61.3
HD'1 CD' CC' HC'2   178.3
CC' CD' HD'1 HD'2   122.2
CC' CD' HD'1 HD'3   239.0
HD'2 CD' HD'1 HD'3   116.8
HD'2 CD' CC' HC'1   181.9
HD'2 CD' CC' HC'2   298.8
CC' CD' HD'2 HD'1   237.9
CC' CD' HD'2 HD'3   121.1
HD'1 CD' HD'2 HD'3   243.2
HD'3 CD' CC' HC'1   301.6
HD'3 CD' CC' HC'2   58.5
CC' CD' HD'3 HD'1   121.5
CC' CD' HD'3 HD'2   238.4
HD'1 CD' HD'3 HD'2   117.0