PDB Chemical Component 2AU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2AU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP3 |
P |
1.482 |
1.502 |
| P |
OP1 |
1.484 |
1.617 |
| P |
O5' |
1.594 |
1.619 |
| OP1 |
H1P1 |
0.950 |
0.981 |
| O5' |
C5' |
1.428 |
1.416 |
| C5' |
C4' |
1.513 |
1.524 |
| C5' |
H5' |
1.100 |
1.091 |
| C5' |
H5'' |
1.100 |
1.091 |
| C4' |
O4' |
1.456 |
1.442 |
| C4' |
C3' |
1.525 |
1.524 |
| C4' |
H4' |
1.100 |
1.095 |
| O4' |
C1' |
1.415 |
1.439 |
| C3' |
O3' |
1.432 |
1.428 |
| C3' |
C2' |
1.525 |
1.521 |
| C3' |
H3' |
1.100 |
1.094 |
| O3' |
HO3' |
0.950 |
0.969 |
| C2' |
C1' |
1.526 |
1.524 |
| C2' |
N2' |
1.454 |
1.453 |
| C2' |
H2' |
1.100 |
1.097 |
| C1' |
N1 |
1.470 |
1.435 |
| C1' |
H1' |
1.099 |
1.095 |
| N1 |
C2 |
1.384 |
1.415 |
| N1 |
C6 |
1.377 |
1.390 |
| C2 |
O2 |
1.219 |
1.233 |
| C2 |
N3 |
1.372 |
1.401 |
| N3 |
C4 |
1.377 |
1.387 |
| N3 |
H3 |
1.000 |
1.017 |
| C4 |
O4 |
1.230 |
1.227 |
| C4 |
C5 |
1.429 |
1.476 |
| C5 |
C6 |
1.337 |
1.335 |
| C5 |
H5 |
1.080 |
1.083 |
| C6 |
H6 |
1.080 |
1.085 |
| N2' |
HA1 |
1.000 |
1.001 |
| N2' |
H2'' |
1.000 |
1.001 |
| OP2 |
P |
|
1.617 |
| OP2 |
H2P1 |
|
0.981 |
Bond Angles for 2AU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP3 |
P |
OP1 |
119.4 |
115.3 |
| OP3 |
P |
O5' |
108.3 |
115.0 |
| OP1 |
P |
O5' |
108.4 |
103.7 |
| P |
OP1 |
H1P1 |
109.5 |
118.9 |
| P |
O5' |
C5' |
121.3 |
118.5 |
| O5' |
C5' |
C4' |
110.1 |
108.7 |
| O5' |
C5' |
H5' |
109.1 |
109.2 |
| O5' |
C5' |
H5'' |
109.3 |
109.2 |
| C4' |
C5' |
H5' |
109.1 |
110.0 |
| C4' |
C5' |
H5'' |
109.2 |
110.0 |
| C5' |
C4' |
O4' |
108.6 |
108.1 |
| C5' |
C4' |
C3' |
115.1 |
113.3 |
| C5' |
C4' |
H4' |
105.0 |
109.3 |
| H5' |
C5' |
H5'' |
110.0 |
109.6 |
| O4' |
C4' |
C3' |
105.4 |
106.0 |
| O4' |
C4' |
H4' |
114.8 |
107.7 |
| C4' |
O4' |
C1' |
109.9 |
109.4 |
| C3' |
C4' |
H4' |
108.2 |
112.1 |
| C4' |
C3' |
O3' |
112.3 |
108.8 |
| C4' |
C3' |
C2' |
102.8 |
102.3 |
| C4' |
C3' |
H3' |
113.0 |
113.5 |
| O4' |
C1' |
C2' |
106.8 |
106.8 |
| O4' |
C1' |
N1 |
108.4 |
109.0 |
| O4' |
C1' |
H1' |
113.6 |
107.5 |
| O3' |
C3' |
C2' |
112.3 |
111.4 |
| O3' |
C3' |
H3' |
103.7 |
107.5 |
| C3' |
O3' |
HO3' |
109.5 |
106.4 |
| C2' |
C3' |
H3' |
113.0 |
113.4 |
| C3' |
C2' |
C1' |
101.0 |
102.2 |
| C3' |
C2' |
N2' |
110.9 |
114.1 |
| C3' |
C2' |
H2' |
113.9 |
108.8 |
| C1' |
C2' |
N2' |
109.3 |
113.1 |
| C1' |
C2' |
H2' |
115.4 |
109.8 |
| C2' |
C1' |
N1 |
114.0 |
112.9 |
| C2' |
C1' |
H1' |
107.9 |
112.8 |
| N2' |
C2' |
H2' |
106.3 |
108.6 |
| C2' |
N2' |
HA1 |
109.5 |
118.4 |
| C2' |
N2' |
H2'' |
109.5 |
118.5 |
| N1 |
C1' |
H1' |
106.3 |
107.7 |
| C1' |
N1 |
C2 |
117.9 |
121.3 |
| C1' |
N1 |
C6 |
121.2 |
118.6 |
| C2 |
N1 |
C6 |
120.9 |
120.1 |
| N1 |
C2 |
O2 |
123.0 |
123.7 |
| N1 |
C2 |
N3 |
115.0 |
115.1 |
| N1 |
C6 |
C5 |
122.4 |
124.1 |
| N1 |
C6 |
H6 |
118.8 |
115.5 |
| O2 |
C2 |
N3 |
122.0 |
121.1 |
| C2 |
N3 |
C4 |
127.1 |
126.8 |
| C2 |
N3 |
H3 |
116.5 |
116.6 |
| C4 |
N3 |
H3 |
116.4 |
116.6 |
| N3 |
C4 |
O4 |
119.4 |
124.5 |
| N3 |
C4 |
C5 |
114.6 |
114.6 |
| O4 |
C4 |
C5 |
126.0 |
120.9 |
| C4 |
C5 |
C6 |
120.0 |
119.2 |
| C4 |
C5 |
H5 |
120.0 |
118.8 |
| C6 |
C5 |
H5 |
120.0 |
121.9 |
| C5 |
C6 |
H6 |
118.8 |
120.4 |
| HA1 |
N2' |
H2'' |
109.5 |
121.7 |
Torsion Angles for 2AU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP3 |
O5' |
124.6 |
120.6 |
| OP3 |
P |
OP1 |
H1P1 |
185.0 |
48.9 |
| OP3 |
P |
O5' |
C5' |
110.2 |
180.0 |
| OP3 |
P |
OP1 |
O5' |
235.5 |
233.4 |
| OP1 |
P |
O5' |
C5' |
339.3 |
53.2 |
| OP3 |
P |
O5' |
OP1 |
130.9 |
126.8 |
| O5' |
P |
OP1 |
H1P1 |
309.5 |
175.4 |
| P |
O5' |
C5' |
C4' |
142.7 |
180.0 |
| P |
O5' |
C5' |
H5' |
22.9 |
300.1 |
| P |
O5' |
C5' |
H5'' |
262.7 |
60.0 |
| H1P1 |
OP1 |
P |
O5' |
309.5 |
175.4 |
| C4' |
C5' |
O5' |
H5' |
119.7 |
240.0 |
| C4' |
C5' |
O5' |
H5'' |
240.0 |
120.0 |
| O5' |
C5' |
C4' |
O4' |
282.2 |
62.4 |
| O5' |
C5' |
C4' |
C3' |
40.0 |
179.5 |
| O5' |
C5' |
C4' |
H4' |
158.9 |
305.4 |
| H5' |
C5' |
O5' |
H5'' |
120.3 |
240.1 |
| O5' |
C5' |
C4' |
H5' |
240.3 |
119.5 |
| O5' |
C5' |
C4' |
H5'' |
120.0 |
240.5 |
| H5' |
C5' |
C4' |
H5'' |
239.7 |
120.9 |
| O4' |
C4' |
C5' |
C3' |
242.1 |
242.8 |
| O4' |
C4' |
C5' |
H4' |
123.2 |
117.0 |
| C5' |
C4' |
O4' |
C1' |
115.6 |
107.5 |
| C3' |
C4' |
C5' |
H4' |
241.1 |
234.1 |
| C5' |
C4' |
C3' |
O3' |
147.9 |
155.2 |
| C5' |
C4' |
C3' |
C2' |
268.9 |
273.2 |
| C5' |
C4' |
C3' |
H3' |
31.0 |
35.6 |
| O5' |
C5' |
H5' |
C4' |
120.4 |
240.8 |
| O5' |
C5' |
H5' |
H5'' |
240.2 |
119.6 |
| C4' |
C5' |
H5' |
H5'' |
119.8 |
238.8 |
| H5' |
C5' |
C4' |
O4' |
41.9 |
302.8 |
| H5' |
C5' |
C4' |
C3' |
159.7 |
60.0 |
| H5' |
C5' |
C4' |
H4' |
278.7 |
185.9 |
| O5' |
C5' |
H5'' |
C4' |
239.5 |
119.2 |
| O5' |
C5' |
H5'' |
H5' |
119.7 |
240.4 |
| C4' |
C5' |
H5'' |
H5' |
240.2 |
121.2 |
| H5'' |
C5' |
C4' |
O4' |
162.2 |
181.9 |
| H5'' |
C5' |
C4' |
C3' |
280.0 |
299.1 |
| H5'' |
C5' |
C4' |
H4' |
38.9 |
64.9 |
| O4' |
C4' |
C5' |
H5' |
41.9 |
302.8 |
| O4' |
C4' |
C5' |
H5'' |
162.2 |
181.9 |
| C5' |
C4' |
O4' |
C3' |
123.8 |
121.8 |
| C5' |
C4' |
O4' |
H4' |
242.8 |
242.0 |
| C3' |
C4' |
O4' |
H4' |
119.0 |
120.2 |
| O4' |
C4' |
C3' |
O3' |
267.5 |
273.6 |
| O4' |
C4' |
C3' |
C2' |
28.5 |
31.6 |
| O4' |
C4' |
C3' |
H3' |
150.6 |
154.1 |
| C4' |
O4' |
C1' |
C2' |
344.3 |
351.0 |
| C4' |
O4' |
C1' |
N1 |
221.0 |
228.8 |
| C4' |
O4' |
C1' |
H1' |
103.1 |
112.3 |
| C3' |
C4' |
C5' |
H5' |
159.7 |
60.0 |
| C3' |
C4' |
C5' |
H5'' |
280.0 |
299.1 |
| C5' |
C4' |
C3' |
O4' |
240.4 |
241.6 |
| C5' |
C4' |
C3' |
H4' |
117.1 |
124.4 |
| O4' |
C4' |
C3' |
H4' |
236.7 |
242.8 |
| C3' |
C4' |
O4' |
C1' |
351.8 |
345.7 |
| O3' |
C3' |
C4' |
C2' |
239.0 |
242.0 |
| O3' |
C3' |
C4' |
H3' |
116.9 |
119.6 |
| C4' |
C3' |
O3' |
HO3' |
232.9 |
190.5 |
| C2' |
C3' |
C4' |
H3' |
237.9 |
237.5 |
| C4' |
C3' |
C2' |
C1' |
323.5 |
324.2 |
| C4' |
C3' |
C2' |
N2' |
207.7 |
201.7 |
| C4' |
C3' |
C2' |
H2' |
87.8 |
80.3 |
| H4' |
C4' |
C5' |
H5' |
278.7 |
185.9 |
| H4' |
C4' |
C5' |
H5'' |
38.9 |
64.9 |
| C5' |
C4' |
H4' |
O4' |
119.2 |
117.3 |
| C5' |
C4' |
H4' |
C3' |
236.6 |
233.5 |
| O4' |
C4' |
H4' |
C3' |
117.4 |
116.2 |
| H4' |
C4' |
O4' |
C1' |
232.8 |
225.5 |
| H4' |
C4' |
C3' |
O3' |
30.8 |
30.8 |
| H4' |
C4' |
C3' |
C2' |
151.8 |
148.8 |
| H4' |
C4' |
C3' |
H3' |
273.9 |
271.3 |
| C1' |
O4' |
C4' |
C3' |
351.8 |
345.7 |
| C1' |
O4' |
C4' |
H4' |
232.8 |
225.5 |
| C3' |
C2' |
C1' |
O4' |
32.8 |
28.4 |
| O4' |
C1' |
C2' |
N2' |
149.7 |
151.5 |
| O4' |
C1' |
C2' |
H2' |
269.5 |
273.1 |
| C2' |
C1' |
O4' |
N1 |
123.2 |
122.2 |
| C2' |
C1' |
O4' |
H1' |
241.1 |
238.7 |
| N1 |
C1' |
O4' |
H1' |
117.9 |
116.5 |
| O4' |
C1' |
N1 |
C2 |
212.5 |
213.6 |
| O4' |
C1' |
N1 |
C6 |
32.5 |
33.6 |
| O3' |
C3' |
C4' |
H4' |
30.8 |
30.8 |
| C4' |
C3' |
O3' |
C2' |
115.3 |
112.0 |
| C4' |
C3' |
O3' |
H3' |
237.6 |
236.8 |
| C2' |
C3' |
O3' |
H3' |
122.3 |
124.7 |
| O3' |
C3' |
C2' |
C1' |
84.4 |
80.3 |
| O3' |
C3' |
C2' |
N2' |
328.6 |
317.8 |
| O3' |
C3' |
C2' |
H2' |
208.8 |
196.4 |
| C2' |
C3' |
C4' |
H4' |
151.8 |
148.8 |
| C4' |
C3' |
C2' |
O3' |
239.1 |
243.9 |
| C4' |
C3' |
C2' |
H3' |
122.2 |
122.5 |
| O4' |
C1' |
C2' |
C3' |
32.8 |
28.4 |
| O3' |
C3' |
C2' |
H3' |
243.1 |
238.6 |
| C2' |
C3' |
O3' |
HO3' |
117.6 |
78.4 |
| C1' |
C2' |
C3' |
N2' |
115.8 |
122.5 |
| C1' |
C2' |
C3' |
H2' |
235.7 |
243.9 |
| C3' |
C2' |
C1' |
N1 |
152.5 |
148.1 |
| C3' |
C2' |
C1' |
H1' |
270.3 |
270.6 |
| N2' |
C2' |
C3' |
H2' |
119.8 |
121.4 |
| C3' |
C2' |
N2' |
HA1 |
34.2 |
162.4 |
| C3' |
C2' |
N2' |
H2'' |
274.2 |
355.8 |
| H3' |
C3' |
C4' |
H4' |
273.9 |
271.3 |
| C4' |
C3' |
H3' |
O3' |
121.9 |
120.3 |
| C4' |
C3' |
H3' |
C2' |
243.7 |
243.9 |
| O3' |
C3' |
H3' |
C2' |
121.9 |
123.6 |
| H3' |
C3' |
O3' |
HO3' |
355.3 |
313.7 |
| H3' |
C3' |
C2' |
C1' |
201.3 |
201.7 |
| H3' |
C3' |
C2' |
N2' |
85.5 |
79.2 |
| H3' |
C3' |
C2' |
H2' |
325.7 |
317.8 |
| HO3' |
O3' |
C3' |
C2' |
117.6 |
78.4 |
| HO3' |
O3' |
C3' |
H3' |
355.3 |
313.7 |
| O4' |
C1' |
C2' |
N1 |
240.3 |
240.3 |
| O4' |
C1' |
C2' |
H1' |
122.5 |
117.9 |
| C1' |
C2' |
C3' |
H3' |
201.3 |
201.7 |
| C3' |
C2' |
C1' |
N2' |
243.0 |
236.9 |
| C3' |
C2' |
C1' |
H2' |
123.3 |
115.3 |
| N2' |
C2' |
C1' |
H2' |
240.3 |
238.4 |
| C1' |
C2' |
N2' |
HA1 |
283.6 |
46.1 |
| C1' |
C2' |
N2' |
H2'' |
163.7 |
239.5 |
| N1 |
C1' |
C2' |
H1' |
242.2 |
237.6 |
| C2' |
C1' |
N1 |
C2 |
93.7 |
95.2 |
| C2' |
C1' |
N1 |
C6 |
273.8 |
275.2 |
| N2' |
C2' |
C3' |
H3' |
85.5 |
79.2 |
| C3' |
C2' |
N2' |
C1' |
110.6 |
116.2 |
| C3' |
C2' |
N2' |
H2' |
235.7 |
238.5 |
| C1' |
C2' |
N2' |
H2' |
125.1 |
122.2 |
| N2' |
C2' |
C1' |
N1 |
269.5 |
271.2 |
| N2' |
C2' |
C1' |
H1' |
27.3 |
33.7 |
| HA1 |
N2' |
C2' |
H2'' |
120.0 |
166.6 |
| H2' |
C2' |
C3' |
H3' |
325.7 |
317.8 |
| C3' |
C2' |
H2' |
C1' |
243.8 |
248.9 |
| C3' |
C2' |
H2' |
N2' |
122.4 |
124.7 |
| C1' |
C2' |
H2' |
N2' |
238.6 |
235.8 |
| H2' |
C2' |
C1' |
N1 |
29.2 |
32.8 |
| H2' |
C2' |
C1' |
H1' |
147.0 |
155.2 |
| H2' |
C2' |
N2' |
HA1 |
158.5 |
283.9 |
| H2' |
C2' |
N2' |
H2'' |
38.5 |
117.3 |
| O4' |
C1' |
N1 |
C2' |
118.8 |
118.4 |
| O4' |
C1' |
N1 |
H1' |
237.5 |
243.6 |
| N1 |
C1' |
C2' |
N2' |
269.5 |
271.2 |
| N1 |
C1' |
C2' |
H2' |
29.2 |
32.8 |
| C2' |
C1' |
N1 |
H1' |
118.8 |
125.2 |
| C2 |
N1 |
C1' |
C6 |
180.0 |
180.0 |
| C1' |
N1 |
C2 |
O2 |
0.1 |
0.0 |
| C1' |
N1 |
C2 |
N3 |
180.0 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
180.0 |
179.9 |
| C1' |
N1 |
C6 |
H6 |
0.0 |
360.0 |
| O4' |
C1' |
H1' |
C2' |
241.8 |
242.6 |
| O4' |
C1' |
H1' |
N1 |
119.1 |
117.3 |
| H1' |
C1' |
C2' |
N2' |
27.3 |
33.7 |
| H1' |
C1' |
C2' |
H2' |
147.0 |
155.2 |
| C2' |
C1' |
H1' |
N1 |
237.3 |
234.8 |
| H1' |
C1' |
N1 |
C2 |
335.0 |
329.9 |
| H1' |
C1' |
N1 |
C6 |
155.0 |
150.0 |
| C2 |
N1 |
C1' |
H1' |
335.0 |
329.9 |
| C1' |
N1 |
C2 |
C6 |
180.0 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
0.1 |
360.0 |
| C2 |
N1 |
C6 |
H6 |
180.1 |
180.0 |
| O2 |
C2 |
N1 |
N3 |
180.1 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
359.9 |
0.0 |
| N1 |
C2 |
N3 |
H3 |
179.9 |
180.0 |
| C6 |
N1 |
C1' |
H1' |
155.0 |
150.0 |
| C1' |
N1 |
C6 |
C2 |
179.9 |
180.0 |
| C6 |
N1 |
C2 |
O2 |
180.0 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
360.0 |
0.0 |
| C4 |
C5 |
C6 |
N1 |
0.1 |
0.1 |
| N1 |
C6 |
C5 |
H5 |
180.1 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.9 |
| O2 |
C2 |
N1 |
C6 |
180.0 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
179.9 |
180.0 |
| O2 |
C2 |
N3 |
C4 |
179.9 |
180.0 |
| O2 |
C2 |
N3 |
H3 |
359.9 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
360.0 |
0.0 |
| N1 |
C2 |
N3 |
O2 |
180.1 |
180.0 |
| C4 |
N3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
O4 |
180.8 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.2 |
360.0 |
| C2 |
N3 |
C4 |
H3 |
180.0 |
180.0 |
| O4 |
C4 |
N3 |
C5 |
180.6 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
359.8 |
360.0 |
| N3 |
C4 |
C5 |
H5 |
179.8 |
180.0 |
| C2 |
N3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
N3 |
C4 |
O4 |
0.8 |
0.0 |
| H3 |
N3 |
C4 |
C5 |
180.2 |
180.0 |
| O4 |
C4 |
N3 |
H3 |
0.8 |
0.0 |
| N3 |
C4 |
O4 |
C5 |
179.3 |
180.0 |
| O4 |
C4 |
C5 |
C6 |
179.1 |
180.0 |
| O4 |
C4 |
C5 |
H5 |
359.1 |
0.0 |
| N1 |
C6 |
C5 |
C4 |
0.1 |
0.1 |
| C5 |
C4 |
N3 |
H3 |
180.2 |
180.0 |
| N3 |
C4 |
C5 |
O4 |
180.7 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
180.1 |
180.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.9 |
| H5 |
C5 |
C6 |
H6 |
0.0 |
359.9 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.9 |
| H6 |
C6 |
C5 |
H5 |
0.0 |
359.9 |
| HA1 |
N2' |
C2' |
H2' |
158.5 |
283.9 |
| C2' |
N2' |
HA1 |
H2'' |
240.0 |
193.9 |
| H2'' |
N2' |
C2' |
H2' |
38.5 |
117.3 |
| C2' |
N2' |
H2'' |
HA1 |
120.0 |
166.1 |