PDB Chemical Component 2AT

Ideal Model

Chemical Description

Name 2'-O-ALLYL THYMIDINE-5'-MONOPHOSPHATE
Formula C13 H19 N2 O9 P
Formal charge 0
Molecular weight 378.272 g/mol
Component type RNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 44
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 45
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-methyl-2'-O-prop-2-en-1-yluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-4-prop-2-enoxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OCC=C)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OCC=C)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCC=C
InChI descriptor InChI=1S/C13H19N2O9P/c1-3-4-22-10-9(16)8(6-23-25(19,20)21)24-12(10)15-5-7(2)11(17)14-13(15)18/h3,5,8-10,12,16H,1,4,6H2,2H3,(H,14,17,18)(H2,19,20,21)/t8-,9-,10-,12-/m1/s1
InChIKey descriptor CNJYRVZFMQQJFA-DNRKLUKYSA-N

Status Information

Last modified 2011-06-04
Created 2004-12-17
Release status REL
Model PDB code 1Y9F
Processing site RCSB