PDB Chemical Component 2AM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2AM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.441 1.480
P O2P 1.511 1.609
P O3P 1.447 1.610
P O2' 1.654 1.610
O2P HOP2 0.951 0.966
O3P HOP3 0.951 0.966
C5' O5' 1.449 1.428
C5' C4' 1.512 1.529
C5' H5'1 1.115 1.091
C5' H5'2 1.114 1.090
O5' HO5' 0.950 0.966
C4' O4' 1.477 1.444
C4' C3' 1.574 1.544
C4' H4' 1.115 1.090
O4' C1' 1.446 1.445
C3' O3' 1.444 1.429
C3' C2' 1.555 1.546
C3' H3' 1.115 1.091
O3' HO3' 0.951 0.967
C2' O2' 1.412 1.429
C2' C1' 1.514 1.543
C2' H2' 1.114 1.090
C1' N9 1.475 1.464
C1' H1' 1.115 1.090
N9 C8 1.385 1.363
N9 C4 1.399 1.372
C8 N7 1.322 1.301
C8 H8 1.102 1.080
N7 C5 1.383 1.355
C5 C6 1.426 1.404
C5 C4 1.385 1.405
C6 N6 1.258 1.384
C6 N1 1.387 1.328
N6 HN61 1.021 0.970
N6 HN62 1.019 0.970
N1 C2 1.386 1.321
C2 N3 1.365 1.316
C2 H2 1.103 1.080
N3 C4 1.372 1.329

Bond Angles for 2AM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 106.6 109.5
O1P P O3P 123.0 109.5
O1P P O2' 101.6 109.4
O2P P O3P 119.7 109.5
O2P P O2' 98.5 109.5
P O2P HOP2 106.6 106.9
O3P P O2' 102.3 109.4
P O3P HOP3 123.0 106.8
P O2' C2' 127.6 106.9
O5' C5' C4' 108.7 109.5
O5' C5' H5'1 112.5 109.5
O5' C5' H5'2 112.5 109.5
C5' O5' HO5' 108.7 106.9
C4' C5' H5'1 112.5 109.4
C4' C5' H5'2 112.5 109.4
C5' C4' O4' 111.8 110.4
C5' C4' C3' 111.2 110.5
C5' C4' H4' 107.0 110.4
H5'1 C5' H5'2 98.0 109.5
O4' C4' C3' 110.4 104.8
O4' C4' H4' 107.9 110.4
C4' O4' C1' 105.6 105.3
C3' C4' H4' 108.5 110.3
C4' C3' O3' 111.4 110.6
C4' C3' C2' 96.4 104.1
C4' C3' H3' 116.5 110.5
O4' C1' C2' 100.0 104.9
O4' C1' N9 106.6 110.3
O4' C1' H1' 120.4 110.4
O3' C3' C2' 109.5 110.6
O3' C3' H3' 104.8 110.4
C3' O3' HO3' 111.4 106.8
C2' C3' H3' 118.2 110.6
C3' C2' O2' 109.7 110.5
C3' C2' C1' 108.1 104.0
C3' C2' H2' 110.5 110.5
O2' C2' C1' 110.4 110.8
O2' C2' H2' 108.2 110.4
C1' C2' H2' 109.9 110.5
C2' C1' N9 118.1 110.4
C2' C1' H1' 109.4 110.4
N9 C1' H1' 103.1 110.3
C1' N9 C8 129.5 126.3
C1' N9 C4 123.2 126.3
C8 N9 C4 104.2 107.4
N9 C8 N7 113.6 110.0
N9 C8 H8 125.3 125.0
N9 C4 C5 105.0 106.1
N9 C4 N3 125.8 134.9
N7 C8 H8 121.2 125.0
C8 N7 C5 103.9 109.4
N7 C5 C6 126.3 134.7
N7 C5 C4 110.1 107.1
C6 C5 C4 122.8 118.2
C5 C6 N6 125.2 120.8
C5 C6 N1 111.4 118.5
C5 C4 N3 125.0 119.0
N6 C6 N1 123.4 120.7
C6 N6 HN61 125.1 120.0
C6 N6 HN62 106.6 120.0
C6 N1 C2 121.9 121.2
HN61 N6 HN62 106.7 120.1
N1 C2 N3 127.8 122.5
N1 C2 H2 117.0 118.7
N3 C2 H2 115.2 118.8
C2 N3 C4 109.5 120.7

Torsion Angles for 2AM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 215.8 120.0
O2P P O1P O2' 102.7 240.0
O1P P O2P HOP2 180.0 300.0
O3P P O1P O2' 246.8 119.9
O1P P O3P HOP3 180.0 180.0
O1P P O2' C2' 30.1 60.0
O1P P O2P O3P 145.6 240.0
O1P P O2P O2' 255.1 120.0
O3P P O2P O2' 109.5 240.0
O2P P O3P HOP3 319.8 60.0
O2P P O2' C2' 281.1 180.0
O1P P O3P O2P 220.2 120.0
O1P P O3P O2' 112.8 240.1
O2P P O3P O2' 252.6 120.1
O3P P O2P HOP2 34.4 60.0
O3P P O2' C2' 158.1 300.0
O1P P O2' O2P 109.0 240.0
O1P P O2' O3P 232.1 120.0
O2P P O2' O3P 123.1 240.0
O2' P O2P HOP2 284.9 180.0
O2' P O3P HOP3 67.2 300.0
C3' C2' O2' P 240.4 238.5
P O2' C2' C1' 121.4 123.8
P O2' C2' H2' 1.1 1.1
HOP2 O2P P O3P 34.4 60.0
HOP2 O2P P O2' 284.9 180.0
HOP3 O3P P O2' 67.2 300.0
C4' C5' O5' H5'1 234.8 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 315.9 61.4
O5' C5' C4' C3' 79.7 176.9
O5' C5' C4' H4' 198.0 299.2
H5'1 C5' O5' H5'2 250.5 120.0
O5' C5' C4' H5'1 125.2 240.0
O5' C5' C4' H5'2 234.8 120.0
C4' C5' O5' HO5' 180.0 180.0
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 236.2 244.6
O4' C4' C5' H4' 117.9 122.3
C5' C4' O4' C1' 147.5 159.5
C3' C4' C5' H4' 241.7 237.7
C5' C4' C3' O3' 125.6 98.3
C5' C4' C3' C2' 239.5 217.1
C5' C4' C3' H3' 5.4 335.8
O5' C5' H5'1 C4' 236.9 120.1
O5' C5' H5'1 H5'2 118.4 240.0
H5'1 C5' O5' HO5' 305.2 60.0
C4' C5' H5'1 H5'2 241.5 119.9
H5'1 C5' C4' O4' 190.6 181.5
H5'1 C5' C4' C3' 314.5 296.9
H5'1 C5' C4' H4' 72.8 59.2
O5' C5' H5'2 C4' 123.1 240.0
O5' C5' H5'2 H5'1 241.6 120.0
H5'2 C5' O5' HO5' 54.7 300.0
C4' C5' H5'2 H5'1 118.4 240.1
H5'2 C5' C4' O4' 81.1 301.4
H5'2 C5' C4' C3' 205.0 56.9
H5'2 C5' C4' H4' 323.2 179.2
HO5' O5' C5' C4' 180.0 180.0
HO5' O5' C5' H5'1 305.2 60.0
HO5' O5' C5' H5'2 54.7 300.0
O4' C4' C5' H5'1 190.6 181.5
O4' C4' C5' H5'2 81.1 301.4
C5' C4' O4' C3' 124.3 119.0
C5' C4' O4' H4' 242.6 237.7
C3' C4' O4' H4' 118.3 118.7
O4' C4' C3' O3' 250.2 217.2
O4' C4' C3' C2' 4.1 336.0
O4' C4' C3' H3' 130.1 94.7
C4' O4' C1' C2' 320.1 319.5
C4' O4' C1' N9 196.6 200.7
C4' O4' C1' H1' 79.8 78.5
C3' C4' C5' H5'1 314.5 296.9
C3' C4' C5' H5'2 205.0 56.9
C5' C4' C3' O4' 235.4 241.1
C5' C4' C3' H4' 117.4 122.3
O4' C4' C3' H4' 242.0 241.2
C3' C4' O4' C1' 23.1 40.5
O3' C3' C4' C2' 246.1 241.2
O3' C3' C4' H3' 120.2 122.5
C4' C3' O3' HO3' 180.0 298.7
C2' C3' C4' H3' 234.1 241.3
C4' C3' C2' O2' 210.3 241.2
C4' C3' C2' C1' 330.7 0.1
C4' C3' C2' H2' 91.0 118.6
H4' C4' C5' H5'1 72.8 59.2
H4' C4' C5' H5'2 323.2 179.2
C5' C4' H4' O4' 120.4 122.3
C5' C4' H4' C3' 239.9 237.6
O4' C4' H4' C3' 119.5 115.3
H4' C4' O4' C1' 264.8 281.7
H4' C4' C3' O3' 8.2 336.0
H4' C4' C3' C2' 122.1 94.7
H4' C4' C3' H3' 248.0 213.5
C1' O4' C4' C3' 23.1 40.5
C1' O4' C4' H4' 264.8 281.7
C3' C2' C1' O4' 44.8 23.9
O2' C2' C1' O4' 164.8 142.6
O4' C1' C2' H2' 284.1 265.3
C2' C1' O4' N9 123.5 118.9
C2' C1' O4' H1' 240.3 241.1
N9 C1' O4' H1' 116.8 122.2
O4' C1' N9 C8 63.7 27.0
O4' C1' N9 C4 266.7 207.0
O3' C3' C4' H4' 8.2 336.0
C4' C3' O3' C2' 105.4 114.8
C4' C3' O3' H3' 233.1 237.5
C2' C3' O3' H3' 127.7 122.7
O3' C3' C2' O2' 325.8 360.0
O3' C3' C2' C1' 86.2 118.9
O3' C3' C2' H2' 206.5 237.4
P O2' C2' C3' 240.4 238.5
C2' C3' C4' H4' 122.1 94.7
C4' C3' C2' O3' 244.5 241.2
C4' C3' C2' H3' 124.7 118.7
O4' C1' C2' C3' 44.8 23.9
O3' C3' C2' H3' 240.2 237.5
C2' C3' O3' HO3' 74.5 183.9
O2' C2' C3' C1' 239.6 241.1
O2' C2' C3' H2' 119.3 122.5
C1' C2' C3' H2' 239.7 241.4
C3' C2' C1' N9 159.9 142.7
C3' C2' C1' H1' 277.4 265.0
H3' C3' C4' H4' 248.0 213.5
C4' C3' H3' O3' 123.7 122.6
C4' C3' H3' C2' 245.9 245.3
O3' C3' H3' C2' 122.3 122.7
H3' C3' O3' HO3' 306.8 61.2
H3' C3' C2' O2' 85.6 122.5
H3' C3' C2' C1' 206.0 241.4
H3' C3' C2' H2' 326.3 360.0
HO3' O3' C3' C2' 74.5 183.9
HO3' O3' C3' H3' 306.8 61.2
O4' C1' C2' O2' 164.8 142.6
O2' C2' C3' H3' 85.6 122.5
C3' C2' O2' C1' 119.0 114.7
C3' C2' O2' H2' 239.3 237.4
C1' C2' O2' H2' 120.3 122.7
O2' C2' C1' N9 279.9 261.5
O2' C2' C1' H1' 37.4 23.7
O4' C1' C2' N9 244.9 241.2
O4' C1' C2' H1' 127.4 118.9
C1' C2' C3' H3' 206.0 241.4
C3' C2' C1' O2' 240.0 241.3
C3' C2' C1' H2' 120.7 118.6
O2' C2' C1' H2' 240.7 237.3
N9 C1' C2' H1' 242.5 237.7
C2' C1' N9 C8 312.2 271.5
C2' C1' N9 C4 155.2 91.6
H2' C2' C3' H3' 326.3 360.0
C3' C2' H2' O2' 120.2 122.6
C3' C2' H2' C1' 240.8 245.5
O2' C2' H2' C1' 120.6 122.9
H2' C2' C1' N9 39.2 24.1
H2' C2' C1' H1' 156.7 146.4
O4' C1' N9 C2' 111.5 115.5
O4' C1' N9 H1' 232.3 237.8
N9 C1' C2' H2' 39.2 24.1
C2' C1' N9 H1' 120.8 122.3
C8 N9 C1' C4 157.0 179.9
C1' N9 C8 N7 190.8 180.0
C1' N9 C8 H8 10.7 0.1
C1' N9 C4 C5 177.9 180.2
C1' N9 C4 N3 335.6 0.1
O4' C1' H1' C2' 245.1 244.5
O4' C1' H1' N9 118.6 122.2
H1' C1' C2' H2' 156.7 146.4
C2' C1' H1' N9 233.5 237.7
H1' C1' N9 C8 191.4 149.2
H1' C1' N9 C4 34.5 329.3
C8 N9 C1' H1' 191.4 149.2
C1' N9 C8 C4 199.7 180.0
C8 N9 C4 C5 16.1 0.3
C8 N9 C4 N3 173.7 180.1
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 357.9 359.8
C4 N9 C1' H1' 34.5 329.3
C1' N9 C4 C8 161.9 180.0
C4 N9 C8 N7 351.0 359.9
C4 N9 C8 H8 171.0 180.0
N7 C5 C4 N9 341.5 359.6
C6 C5 C4 N9 170.9 180.4
C5 C4 N9 N3 202.3 180.2
C2 N3 C4 N9 191.6 180.0
N7 C8 N9 C4 351.0 359.9
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 183.1 179.4
C8 N7 C5 C4 12.9 0.4
H8 C8 N9 C4 171.0 180.0
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 177.9 179.7
N9 C4 C5 N7 341.5 359.6
C5 N7 C8 H8 177.9 179.7
C6 C5 N7 C4 170.2 179.1
N7 C5 C6 N6 9.2 0.8
N7 C5 C6 N1 188.0 180.5
N7 C5 C4 N3 183.6 179.7
N9 C4 C5 C6 170.9 180.4
N7 C5 C6 C4 191.0 181.0
C6 C5 C4 N3 13.0 0.5
N6 C6 C5 N1 181.1 180.3
C5 C6 N6 HN61 180.0 179.7
C5 C6 N6 HN62 54.8 359.4
C5 C6 N1 C2 357.6 0.3
N9 C4 C5 N3 157.9 179.9
N7 C5 C4 C6 170.6 179.2
C4 C5 C6 N6 178.2 179.7
C4 C5 C6 N1 357.0 359.4
C2 N3 C4 C5 345.0 359.8
N6 C6 C5 C4 178.2 179.7
C5 C6 N6 N1 178.8 179.7
N6 C6 N1 C2 176.5 180.0
HN61 N6 C6 HN62 125.2 180.2
N1 C6 C5 C4 357.0 359.4
C5 C6 N1 N6 181.1 180.3
N1 C6 N6 HN61 1.2 360.0
N1 C6 N6 HN62 236.0 179.7
C6 N1 C2 N3 358.7 360.0
C6 N1 C2 H2 178.7 180.0
HN61 N6 C6 N1 1.2 360.0
C6 N6 HN61 HN62 234.8 179.8
HN62 N6 C6 N1 236.0 179.7
C6 N6 HN62 HN61 135.8 180.2
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 9.6 360.0
N9 C4 N3 C2 191.6 180.0
C5 C4 N3 C2 345.0 359.8
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 189.5 180.0
N9 C4 N3 C5 206.6 180.2
C4 N3 C2 H2 189.5 180.0