Atom Nomenclature for 29C

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 29C

Atom Name (V3) Atom Name (V2)
O4 O4
C4 C4
C4A C4A
N3 N3
C8A C8A
N5 N5
C2 C2
N8 N8
N1 N1
C6 C6
N2 N2
C7 C7
C9 C9
N10 N10
CBP CBP
CAN CAN
CAO CAO
CAP CAP
CAQ CAQ
CBQ CBQ
CBN CBN
OAH OAH
NBG NBG
CBX CBX
CBK CBK
OAE OAE
CAX CAX
CAU CAU
CBM CBM
OAG OAG
OAL OAL
NBF NBF
CBW CBW
CBJ CBJ
OAK OAK
CAW CAW
CAT CAT
CBL CBL
OAF OAF
OAD OAD
N N
CA CA
C C
O O
CB CB
CG CG
CD CD
OE2 OE2
OE1 OE1
OXT OXT
H4 H4
H2 H2
H3 H3
H1 H1
H5 H5
H6 H6
H7 H7
H10 H10
H8 H8
H11 H11
H9 H9
H12 H12
H13 H13
H15 H15
H16 H16
H17 H17
H18 H18
H14 H14
H19 H19
H20 H20
H22 H22
H23 H23
H24 H24
H25 H25
H21 H21
H26 H26
H27 H27
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H28 H28