Atom Nomenclature for 27E

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 27E

Atom Name (V3) Atom Name (V2)
OAU OAU
CAA CAA
CAB CAB
CLT CLAT
CAC CAC
CLS CLAS
CAH CAH
CLN CLAN
CAG CAG
CLO CLAO
CAF CAF
CLP CLAP
CAE CAE
CLQ CLAQ
CAD CAD
CLR CLAR
CAJ CAJ
CLK CLAK
CAI CAI
CLM CLAM
CLL CLAL