Atom Nomenclature for 276

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 276

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
N3 N3
C4 C4
C5 C5
C6 C6
C10 C10
O11 O11
N12 N12
C13 C13
O17 O17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
N27 N27
C28 C28
N29 N29
N32 N32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
C43 C43
CL44 CL44
F45 F45
F46 F46
F47 F47
H1 H1
H2 H2
H5 H5
HN12 HN12
H131 1H13
H132 2H13
H133 3H13
H19 H19
H22 H22
H23 H23
HN27 HN27
HN32 HN32
H34 H34
H37 H37
H38 H38