Atom Nomenclature for 26P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 26P

Atom Name (V3) Atom Name (V2)
C1 C1
O11 O11
O12 O12
C2 C2
N2 N2
C3 C3
C4 C4
C5 C5
C6 C6
O6 O6
C7 C7
O71 O71
O72 O72
HOC HOC
H2 H2
HN21 1HN2
HN22 2HN2
H31 1H3
H32 2H3
H41 1H4
H42 2H4
H51 1H5
H52 2H5
HO HO