Atom Nomenclature for 26J

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 26J

Atom Name (V3) Atom Name (V2)
NBE NBE
OAE OAE
CAX CAX
CBB CBB
SAV SAV
CAY CAY
NAR NAR
CAZ CAZ
OAD OAD
CBA CBA
CAK CAK
CAW CAW
CBG CBG
FAG FAG
FAH FAH
FAF FAF
CAJ CAJ
NBF NBF
CAM CAM
CAO CAO
NBH NBH
CAN CAN
CAL CAL
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26