PDB Chemical Component 25T
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 25T
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S1 |
C2 |
1.400 |
1.737 |
| S1 |
C5 |
1.401 |
1.787 |
| C2 |
N3 |
1.400 |
1.320 |
| C2 |
N |
1.480 |
1.386 |
| N3 |
C4 |
1.401 |
1.320 |
| N3 |
HN3 |
1.019 |
0.970 |
| C4 |
C5 |
1.400 |
1.354 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
CM |
1.540 |
1.507 |
| N |
HN1 |
1.019 |
0.970 |
| N |
HN2 |
1.020 |
0.971 |
| CM |
HM1 |
1.115 |
1.090 |
| CM |
HM2 |
1.115 |
1.090 |
| CM |
HM3 |
1.116 |
1.090 |
Bond Angles for 25T
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S1 |
C5 |
108.0 |
97.5 |
| S1 |
C2 |
N3 |
108.0 |
102.1 |
| S1 |
C2 |
N |
126.0 |
128.9 |
| S1 |
C5 |
C4 |
108.0 |
100.7 |
| S1 |
C5 |
CM |
126.0 |
129.6 |
| N3 |
C2 |
N |
126.0 |
128.9 |
| C2 |
N3 |
C4 |
108.0 |
121.1 |
| C2 |
N3 |
HN3 |
126.0 |
119.4 |
| C2 |
N |
HN1 |
126.0 |
120.0 |
| C2 |
N |
HN2 |
106.4 |
120.0 |
| C4 |
N3 |
HN3 |
126.0 |
119.4 |
| N3 |
C4 |
C5 |
108.0 |
118.5 |
| N3 |
C4 |
H4 |
126.0 |
120.8 |
| C5 |
C4 |
H4 |
126.0 |
120.7 |
| C4 |
C5 |
CM |
126.0 |
129.7 |
| C5 |
CM |
HM1 |
126.0 |
109.5 |
| C5 |
CM |
HM2 |
106.4 |
109.5 |
| C5 |
CM |
HM3 |
106.4 |
109.5 |
| HN1 |
N |
HN2 |
106.4 |
120.0 |
| HM1 |
CM |
HM2 |
106.4 |
109.5 |
| HM1 |
CM |
HM3 |
106.4 |
109.4 |
| HM2 |
CM |
HM3 |
103.1 |
109.4 |
Torsion Angles for 25T
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S1 |
C5 |
C4 |
0.0 |
0.3 |
| C2 |
S1 |
C5 |
CM |
180.0 |
180.0 |
| N3 |
C2 |
S1 |
N |
179.9 |
180.0 |
| S1 |
C2 |
N3 |
C4 |
0.0 |
359.7 |
| S1 |
C2 |
N3 |
HN3 |
180.0 |
180.0 |
| S1 |
C2 |
N |
HN1 |
180.0 |
0.0 |
| S1 |
C2 |
N |
HN2 |
54.7 |
179.9 |
| C5 |
S1 |
C2 |
N3 |
360.0 |
0.0 |
| C5 |
S1 |
C2 |
N |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
S1 |
360.0 |
359.5 |
| S1 |
C5 |
C4 |
H4 |
180.0 |
180.1 |
| C4 |
C5 |
S1 |
CM |
180.0 |
180.2 |
| S1 |
C5 |
CM |
HM1 |
180.0 |
360.0 |
| S1 |
C5 |
CM |
HM2 |
305.3 |
120.0 |
| S1 |
C5 |
CM |
HM3 |
54.7 |
240.0 |
| N3 |
C2 |
S1 |
C5 |
360.0 |
0.0 |
| S1 |
C2 |
N3 |
N |
180.1 |
180.0 |
| N3 |
C2 |
N |
HN1 |
0.1 |
180.1 |
| N3 |
C2 |
N |
HN2 |
234.8 |
0.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
179.7 |
| C2 |
N3 |
C4 |
C5 |
360.0 |
0.6 |
| C2 |
N3 |
C4 |
H4 |
179.9 |
180.0 |
| N |
C2 |
S1 |
C5 |
180.0 |
180.0 |
| S1 |
C2 |
N |
N3 |
179.9 |
179.9 |
| N |
C2 |
N3 |
C4 |
180.0 |
179.7 |
| N |
C2 |
N3 |
HN3 |
359.9 |
359.9 |
| HN1 |
N |
C2 |
HN2 |
125.3 |
180.1 |
| S1 |
C5 |
C4 |
N3 |
360.0 |
359.5 |
| C4 |
N3 |
C2 |
N |
180.0 |
179.7 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.3 |
| C5 |
C4 |
N3 |
H4 |
180.0 |
180.6 |
| N3 |
C4 |
C5 |
CM |
180.0 |
179.8 |
| HN3 |
N3 |
C2 |
N |
359.9 |
359.9 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
179.7 |
| HN3 |
N3 |
C4 |
C5 |
180.0 |
180.3 |
| HN3 |
N3 |
C4 |
H4 |
360.0 |
359.7 |
| S1 |
C5 |
C4 |
CM |
180.0 |
179.8 |
| C5 |
C4 |
N3 |
HN3 |
180.0 |
180.3 |
| N3 |
C4 |
C5 |
H4 |
180.0 |
179.4 |
| C4 |
C5 |
CM |
HM1 |
360.0 |
179.7 |
| C4 |
C5 |
CM |
HM2 |
125.3 |
299.7 |
| C4 |
C5 |
CM |
HM3 |
234.7 |
59.7 |
| H4 |
C4 |
N3 |
HN3 |
360.0 |
359.7 |
| N3 |
C4 |
H4 |
C5 |
180.1 |
180.6 |
| H4 |
C4 |
C5 |
CM |
0.0 |
0.4 |
| S1 |
C5 |
CM |
C4 |
180.0 |
180.3 |
| CM |
C5 |
C4 |
H4 |
0.0 |
0.4 |
| HM1 |
CM |
C5 |
HM2 |
234.7 |
240.0 |
| HM1 |
CM |
C5 |
HM3 |
125.2 |
120.0 |
| HM2 |
CM |
C5 |
HM3 |
250.5 |
240.0 |
| C2 |
N |
HN1 |
HN2 |
234.7 |
179.9 |
| C2 |
N |
HN2 |
HN1 |
136.6 |
180.1 |
| C5 |
CM |
HM1 |
HM2 |
125.3 |
120.1 |
| C5 |
CM |
HM1 |
HM3 |
234.7 |
240.0 |
| HM2 |
CM |
HM1 |
HM3 |
109.4 |
119.9 |
| C5 |
CM |
HM2 |
HM1 |
223.5 |
239.9 |
| C5 |
CM |
HM2 |
HM3 |
111.8 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
248.3 |
240.1 |
| C5 |
CM |
HM3 |
HM1 |
136.5 |
120.0 |
| C5 |
CM |
HM3 |
HM2 |
248.2 |
240.0 |
| HM1 |
CM |
HM3 |
HM2 |
111.7 |
120.0 |