PDB Chemical Component 253
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 253
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C9 |
1.339 |
1.382 |
| C18 |
C17 |
1.517 |
1.506 |
| N20 |
C9 |
1.329 |
1.313 |
| N20 |
C19 |
1.389 |
1.344 |
| C9 |
C8 |
1.417 |
1.459 |
| C17 |
C19 |
1.424 |
1.402 |
| C17 |
C15 |
1.417 |
1.380 |
| C19 |
C12 |
1.470 |
1.420 |
| C8 |
C7 |
1.419 |
1.403 |
| C8 |
C11 |
1.466 |
1.416 |
| C7 |
N6 |
1.348 |
1.307 |
| N16 |
C15 |
1.357 |
1.394 |
| C15 |
C14 |
1.409 |
1.397 |
| N6 |
C5 |
1.370 |
1.340 |
| C12 |
C11 |
1.484 |
1.457 |
| C12 |
C13 |
1.434 |
1.397 |
| C11 |
C21 |
1.476 |
1.454 |
| C5 |
C21 |
1.467 |
1.421 |
| C5 |
C4 |
1.395 |
1.403 |
| C14 |
C13 |
1.399 |
1.363 |
| C21 |
C22 |
1.429 |
1.396 |
| C4 |
C3 |
1.414 |
1.376 |
| C22 |
C23 |
1.412 |
1.368 |
| C25 |
O24 |
1.434 |
1.429 |
| C3 |
C23 |
1.421 |
1.400 |
| C3 |
O2 |
1.408 |
1.359 |
| C23 |
O24 |
1.406 |
1.359 |
| O2 |
C1 |
1.420 |
1.428 |
| C1 |
H11 |
1.100 |
1.090 |
| C1 |
H12 |
1.100 |
1.090 |
| C1 |
H13A |
1.100 |
1.091 |
| C25 |
H251 |
1.101 |
1.090 |
| C25 |
H252 |
1.099 |
1.090 |
| C25 |
H253 |
1.100 |
1.090 |
| C22 |
H22 |
1.080 |
1.080 |
| C18 |
H181 |
1.100 |
1.090 |
| C18 |
H182 |
1.100 |
1.090 |
| C18 |
H183 |
1.100 |
1.090 |
| N16 |
H161 |
1.000 |
0.970 |
| N16 |
H162 |
1.000 |
0.970 |
| C14 |
H14 |
1.080 |
1.080 |
| C13 |
H13 |
1.080 |
1.080 |
| N1 |
HN11 |
1.000 |
0.970 |
| N1 |
HN12 |
1.000 |
0.970 |
| C7 |
H7 |
1.080 |
1.079 |
| C4 |
H4 |
1.080 |
1.080 |
Bond Angles for 253
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C18 |
C17 |
C15 |
124.1 |
120.1 |
| N20 |
C9 |
C8 |
119.7 |
120.6 |
| C9 |
C8 |
C7 |
115.6 |
122.6 |
| C17 |
C15 |
C14 |
119.7 |
120.3 |
| C19 |
C12 |
C13 |
115.2 |
119.2 |
| C8 |
C7 |
N6 |
119.3 |
121.5 |
| C8 |
C7 |
H7 |
120.4 |
119.6 |
| C7 |
N6 |
C5 |
122.2 |
123.0 |
| N6 |
C7 |
H7 |
120.3 |
118.8 |
| N16 |
C15 |
C14 |
118.9 |
119.8 |
| C15 |
C14 |
C13 |
120.5 |
120.6 |
| C15 |
C14 |
H14 |
119.7 |
119.7 |
| N6 |
C5 |
C4 |
114.9 |
120.5 |
| C12 |
C13 |
C14 |
123.1 |
120.5 |
| C12 |
C13 |
H13 |
118.4 |
120.6 |
| C5 |
C4 |
H4 |
119.4 |
120.1 |
| C13 |
C14 |
H14 |
119.7 |
119.7 |
| C14 |
C13 |
H13 |
118.4 |
118.9 |
| C21 |
C22 |
H22 |
118.4 |
120.6 |
| C3 |
C23 |
O24 |
116.2 |
119.8 |
| O2 |
C1 |
H11 |
109.5 |
109.5 |
| O2 |
C1 |
H12 |
109.4 |
109.5 |
| O2 |
C1 |
H13A |
109.4 |
109.5 |
| H11 |
C1 |
H12 |
109.5 |
109.5 |
| H11 |
C1 |
H13A |
109.4 |
109.5 |
| H12 |
C1 |
H13A |
109.5 |
109.5 |
| H251 |
C25 |
H252 |
109.4 |
109.4 |
| H251 |
C25 |
H253 |
109.5 |
109.5 |
| H252 |
C25 |
H253 |
109.5 |
109.5 |
| H181 |
C18 |
H182 |
109.5 |
109.5 |
| H181 |
C18 |
H183 |
109.5 |
109.4 |
| H182 |
C18 |
H183 |
109.5 |
109.4 |
| H161 |
N16 |
H162 |
109.5 |
120.0 |
| HN11 |
N1 |
HN12 |
109.4 |
120.0 |
Torsion Angles for 253
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C9 |
C8 |
C7 |
359.7 |
354.9 |
| C18 |
C17 |
C15 |
C14 |
179.5 |
179.3 |
| N20 |
C9 |
C8 |
C7 |
180.7 |
175.0 |
| N20 |
C19 |
C12 |
C13 |
182.3 |
185.3 |
| C9 |
C8 |
C7 |
N6 |
177.7 |
175.4 |
| C9 |
C8 |
C7 |
H7 |
357.6 |
355.3 |
| C17 |
C19 |
C12 |
C13 |
1.4 |
4.4 |
| N16 |
C15 |
C17 |
C14 |
180.9 |
180.0 |
| C17 |
C15 |
C14 |
C13 |
0.6 |
1.1 |
| C17 |
C15 |
C14 |
H14 |
180.6 |
181.1 |
| C19 |
C12 |
C13 |
C14 |
359.7 |
356.0 |
| C19 |
C12 |
C13 |
H13 |
179.7 |
173.6 |
| C8 |
C7 |
N6 |
C5 |
359.2 |
357.9 |
| N6 |
C7 |
C8 |
H7 |
180.0 |
180.2 |
| C8 |
C7 |
N6 |
H7 |
180.0 |
179.8 |
| C7 |
N6 |
C5 |
C4 |
182.6 |
178.4 |
| C17 |
C15 |
N16 |
C14 |
179.1 |
180.0 |
| N16 |
C15 |
C14 |
C13 |
179.8 |
181.1 |
| N16 |
C15 |
C14 |
H14 |
359.8 |
1.1 |
| C12 |
C13 |
C14 |
C15 |
359.2 |
1.3 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
H13 |
179.3 |
183.7 |
| C5 |
N6 |
C7 |
H7 |
179.2 |
178.1 |
| N6 |
C5 |
C4 |
H4 |
357.5 |
355.2 |
| C15 |
C14 |
C13 |
C12 |
359.2 |
1.3 |
| C12 |
C13 |
C14 |
H14 |
179.3 |
181.3 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
182.4 |
| C11 |
C21 |
C22 |
H22 |
2.4 |
351.2 |
| C5 |
C21 |
C22 |
H22 |
181.1 |
171.3 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
177.6 |
| C3 |
O2 |
C1 |
H11 |
76.1 |
300.0 |
| C3 |
O2 |
C1 |
H12 |
196.1 |
60.0 |
| C3 |
O2 |
C1 |
H13A |
316.1 |
180.0 |
| H11 |
C1 |
O2 |
H12 |
240.0 |
240.0 |
| H11 |
C1 |
O2 |
H13A |
120.0 |
120.0 |
| H12 |
C1 |
O2 |
H13A |
240.0 |
240.0 |
| O2 |
C1 |
H11 |
H12 |
120.0 |
120.0 |
| O2 |
C1 |
H11 |
H13A |
240.0 |
240.0 |
| H12 |
C1 |
H11 |
H13A |
120.0 |
120.0 |
| O2 |
C1 |
H12 |
H11 |
240.0 |
240.0 |
| O2 |
C1 |
H12 |
H13A |
120.0 |
120.0 |
| H11 |
C1 |
H12 |
H13A |
240.0 |
240.0 |
| O2 |
C1 |
H13A |
H11 |
120.0 |
120.0 |
| O2 |
C1 |
H13A |
H12 |
240.0 |
240.0 |
| H11 |
C1 |
H13A |
H12 |
120.0 |
120.0 |
| H252 |
C25 |
H251 |
H253 |
120.0 |
120.0 |
| H251 |
C25 |
H252 |
H253 |
240.0 |
240.0 |
| H251 |
C25 |
H253 |
H252 |
120.0 |
120.0 |
| H181 |
C18 |
C17 |
C15 |
287.3 |
270.0 |
| H182 |
C18 |
H181 |
H183 |
120.0 |
119.9 |
| H182 |
C18 |
C17 |
C15 |
47.3 |
30.1 |
| H181 |
C18 |
H182 |
H183 |
240.0 |
240.1 |
| H183 |
C18 |
C17 |
C15 |
167.3 |
150.0 |
| H181 |
C18 |
H183 |
H182 |
120.0 |
120.0 |
| H161 |
N16 |
C15 |
C14 |
300.3 |
180.0 |
| H162 |
N16 |
C15 |
C14 |
60.3 |
360.0 |
| C15 |
C14 |
H14 |
C13 |
180.0 |
180.0 |
| H14 |
C14 |
C13 |
H13 |
359.3 |
3.7 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
182.4 |
| H13 |
C13 |
C14 |
H14 |
359.3 |
3.7 |
| C8 |
C7 |
H7 |
N6 |
180.0 |
180.2 |
| H7 |
C7 |
N6 |
C5 |
179.2 |
178.1 |