PDB Chemical Component 24Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 24Z
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C08 |
1.303 |
1.389 |
| N01 |
C13 |
1.494 |
1.464 |
| N01 |
HN01 |
1.000 |
0.970 |
| N02 |
C12 |
1.358 |
1.347 |
| N02 |
H102 |
1.000 |
0.970 |
| N02 |
H202 |
1.000 |
0.970 |
| N03 |
C16 |
1.373 |
1.319 |
| N04 |
C19 |
1.479 |
1.464 |
| N04 |
HN04 |
1.000 |
0.970 |
| N05 |
O27 |
1.305 |
1.218 |
| C06 |
C11 |
1.431 |
1.364 |
| C06 |
H06 |
1.080 |
1.080 |
| C07 |
C06 |
1.433 |
1.398 |
| C07 |
C08 |
1.443 |
1.406 |
| C08 |
C09 |
1.442 |
1.386 |
| C09 |
C10 |
1.423 |
1.389 |
| C09 |
H09 |
1.080 |
1.080 |
| C10 |
N04 |
1.299 |
1.391 |
| C11 |
N05 |
1.289 |
1.481 |
| C11 |
C10 |
1.448 |
1.394 |
| C12 |
C07 |
1.400 |
1.472 |
| C13 |
C14 |
1.520 |
1.507 |
| C13 |
H113 |
1.100 |
1.090 |
| C13 |
H213 |
1.100 |
1.090 |
| C14 |
C18 |
1.420 |
1.386 |
| C15 |
C14 |
1.409 |
1.383 |
| C15 |
N03 |
1.380 |
1.319 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
C17 |
1.407 |
1.383 |
| C16 |
H16 |
1.080 |
1.079 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
C17 |
1.410 |
1.386 |
| C18 |
H18 |
1.080 |
1.080 |
| C19 |
C20 |
1.524 |
1.531 |
| C19 |
H119 |
1.100 |
1.090 |
| C19 |
H219 |
1.100 |
1.090 |
| C20 |
C21 |
1.526 |
1.530 |
| C20 |
H120 |
1.100 |
1.090 |
| C20 |
H220 |
1.100 |
1.090 |
| C21 |
C22 |
1.516 |
1.507 |
| C21 |
H121 |
1.100 |
1.090 |
| C21 |
H221 |
1.100 |
1.091 |
| C22 |
O25 |
1.210 |
1.208 |
| C22 |
O24 |
1.340 |
1.342 |
| O23 |
C12 |
1.209 |
1.216 |
| O26 |
N05 |
1.324 |
1.218 |
| O24 |
H19 |
0.950 |
0.967 |
Bond Angles for 24Z
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C08 |
N01 |
C13 |
125.2 |
120.0 |
| C08 |
N01 |
HN01 |
104.5 |
119.9 |
| N01 |
C08 |
C07 |
120.1 |
120.2 |
| N01 |
C08 |
C09 |
121.2 |
120.2 |
| C13 |
N01 |
HN01 |
104.6 |
120.1 |
| N01 |
C13 |
C14 |
110.7 |
109.4 |
| N01 |
C13 |
H113 |
109.1 |
109.4 |
| N01 |
C13 |
H213 |
109.1 |
109.5 |
| C12 |
N02 |
H102 |
120.0 |
120.0 |
| C12 |
N02 |
H202 |
120.0 |
120.0 |
| N02 |
C12 |
C07 |
119.8 |
120.0 |
| H102 |
N02 |
H202 |
120.0 |
119.9 |
| C15 |
N03 |
C16 |
117.7 |
121.7 |
| N03 |
C16 |
C17 |
123.5 |
120.7 |
| N03 |
C16 |
H16 |
118.2 |
119.7 |
| C19 |
N04 |
HN04 |
105.6 |
120.0 |
| C10 |
N04 |
C19 |
121.5 |
120.0 |
| N04 |
C19 |
C20 |
110.1 |
109.5 |
| N04 |
C19 |
H119 |
109.3 |
109.5 |
| N04 |
C19 |
H219 |
109.2 |
109.5 |
| C10 |
N04 |
HN04 |
105.6 |
120.0 |
| C11 |
N05 |
O27 |
121.2 |
120.0 |
| O26 |
N05 |
O27 |
118.3 |
120.1 |
| C11 |
C06 |
H06 |
119.1 |
119.9 |
| C07 |
C06 |
C11 |
121.9 |
120.2 |
| C06 |
C11 |
C10 |
119.0 |
120.4 |
| C07 |
C06 |
H06 |
119.1 |
119.9 |
| C07 |
C08 |
C09 |
118.7 |
119.6 |
| C08 |
C09 |
C10 |
122.0 |
119.9 |
| C08 |
C09 |
H09 |
119.0 |
120.1 |
| C10 |
C09 |
H09 |
119.0 |
120.0 |
| C14 |
C13 |
H113 |
109.1 |
109.5 |
| C14 |
C13 |
H213 |
109.1 |
109.5 |
| C13 |
C14 |
C18 |
120.8 |
120.4 |
| H113 |
C13 |
H213 |
109.9 |
109.5 |
| C15 |
C14 |
C18 |
117.7 |
119.2 |
| C14 |
C18 |
C17 |
120.5 |
118.4 |
| C14 |
C18 |
H18 |
119.7 |
120.8 |
| C17 |
C16 |
H16 |
118.2 |
119.6 |
| C16 |
C17 |
H17 |
121.2 |
120.4 |
| C18 |
C17 |
H17 |
121.2 |
120.4 |
| C20 |
C19 |
H119 |
109.2 |
109.4 |
| C20 |
C19 |
H219 |
109.3 |
109.5 |
| C19 |
C20 |
C21 |
109.1 |
109.4 |
| C19 |
C20 |
H120 |
109.6 |
109.5 |
| C19 |
C20 |
H220 |
109.6 |
109.5 |
| H119 |
C19 |
H219 |
109.7 |
109.4 |
| C21 |
C20 |
H120 |
109.6 |
109.5 |
| C21 |
C20 |
H220 |
109.6 |
109.5 |
| C20 |
C21 |
C22 |
110.3 |
109.5 |
| C20 |
C21 |
H121 |
109.2 |
109.5 |
| C20 |
C21 |
H221 |
109.2 |
109.5 |
| H120 |
C20 |
H220 |
109.4 |
109.5 |
| C22 |
C21 |
H121 |
109.2 |
109.5 |
| C22 |
C21 |
H221 |
109.2 |
109.4 |
| C21 |
C22 |
O25 |
119.9 |
120.0 |
| C21 |
C22 |
O24 |
120.1 |
120.1 |
| H121 |
C21 |
H221 |
109.7 |
109.5 |
| O24 |
C22 |
O25 |
120.0 |
120.0 |
| C22 |
O24 |
H19 |
109.5 |
117.0 |
Torsion Angles for 24Z
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
N01 |
C08 |
HN01 |
240.0 |
180.3 |
| C08 |
N01 |
C13 |
C14 |
83.9 |
180.0 |
| C08 |
N01 |
C13 |
H113 |
203.9 |
299.9 |
| C08 |
N01 |
C13 |
H213 |
323.9 |
59.9 |
| C07 |
C08 |
N01 |
C09 |
179.9 |
179.9 |
| N01 |
C08 |
C09 |
C10 |
179.9 |
180.0 |
| N01 |
C08 |
C09 |
H09 |
359.9 |
359.9 |
| C08 |
N01 |
C13 |
HN01 |
120.0 |
179.7 |
| C13 |
N01 |
C08 |
C07 |
167.6 |
173.4 |
| C13 |
N01 |
C08 |
C09 |
347.7 |
353.5 |
| C14 |
C13 |
N01 |
H113 |
240.0 |
240.0 |
| C14 |
C13 |
N01 |
H213 |
120.0 |
120.0 |
| N01 |
C13 |
C14 |
C18 |
228.2 |
90.0 |
| H113 |
C13 |
N01 |
H213 |
240.0 |
240.0 |
| C08 |
N01 |
HN01 |
C13 |
227.0 |
180.3 |
| HN01 |
N01 |
C08 |
C07 |
287.6 |
353.0 |
| HN01 |
N01 |
C08 |
C09 |
107.7 |
173.1 |
| HN01 |
N01 |
C13 |
C14 |
323.9 |
0.3 |
| HN01 |
N01 |
C13 |
H113 |
83.9 |
120.3 |
| HN01 |
N01 |
C13 |
H213 |
203.9 |
240.3 |
| H102 |
N02 |
C12 |
H202 |
180.0 |
180.1 |
| C12 |
N02 |
H102 |
H202 |
180.0 |
179.9 |
| H102 |
N02 |
C12 |
C07 |
179.4 |
0.0 |
| C12 |
N02 |
H202 |
H102 |
180.0 |
180.1 |
| H202 |
N02 |
C12 |
C07 |
359.4 |
180.0 |
| C17 |
C16 |
N03 |
H16 |
180.0 |
180.0 |
| N03 |
C16 |
C17 |
H17 |
180.0 |
180.0 |
| C10 |
N04 |
C19 |
HN04 |
240.0 |
179.9 |
| C20 |
C19 |
N04 |
H119 |
240.0 |
240.0 |
| C20 |
C19 |
N04 |
H219 |
120.0 |
120.0 |
| N04 |
C19 |
C20 |
C21 |
247.3 |
180.0 |
| N04 |
C19 |
C20 |
H120 |
7.3 |
300.0 |
| N04 |
C19 |
C20 |
H220 |
127.3 |
59.9 |
| H119 |
C19 |
N04 |
H219 |
240.0 |
240.0 |
| C10 |
N04 |
HN04 |
C19 |
130.0 |
180.1 |
| HN04 |
N04 |
C19 |
C20 |
338.8 |
0.1 |
| HN04 |
N04 |
C19 |
H119 |
98.8 |
120.0 |
| HN04 |
N04 |
C19 |
H219 |
218.8 |
240.0 |
| C06 |
C11 |
N05 |
O27 |
186.9 |
37.4 |
| C07 |
C06 |
C11 |
H06 |
180.0 |
179.6 |
| C07 |
C06 |
H06 |
C11 |
180.0 |
180.4 |
| H06 |
C06 |
C11 |
C10 |
179.9 |
180.3 |
| N01 |
C08 |
C07 |
C06 |
180.0 |
180.0 |
| N02 |
C12 |
C07 |
C06 |
24.4 |
353.9 |
| C11 |
C06 |
C07 |
H06 |
180.0 |
180.4 |
| C07 |
C06 |
C11 |
C10 |
359.9 |
359.9 |
| C07 |
C08 |
N01 |
C13 |
167.6 |
173.4 |
| C07 |
C08 |
N01 |
HN01 |
287.6 |
353.0 |
| N01 |
C08 |
C07 |
C09 |
180.1 |
180.1 |
| N02 |
C12 |
C07 |
C08 |
204.8 |
173.8 |
| C08 |
C07 |
C06 |
C11 |
0.1 |
0.1 |
| C08 |
C07 |
C06 |
H06 |
180.1 |
179.7 |
| C07 |
C08 |
C09 |
C10 |
0.0 |
0.1 |
| C07 |
C08 |
C09 |
H09 |
180.0 |
180.0 |
| C09 |
C08 |
N01 |
C13 |
347.7 |
353.5 |
| C09 |
C08 |
N01 |
HN01 |
107.7 |
173.1 |
| N01 |
C08 |
C09 |
C07 |
179.9 |
179.9 |
| C10 |
C09 |
C08 |
H09 |
180.0 |
180.1 |
| C09 |
C10 |
N04 |
C19 |
49.0 |
5.9 |
| C09 |
C10 |
N04 |
HN04 |
289.0 |
185.8 |
| C06 |
C11 |
C10 |
C09 |
0.0 |
0.1 |
| C08 |
C09 |
C10 |
H09 |
180.0 |
179.9 |
| C08 |
C09 |
H09 |
C10 |
180.0 |
180.1 |
| C19 |
N04 |
C10 |
HN04 |
120.0 |
180.1 |
| C10 |
N04 |
C19 |
C20 |
218.8 |
180.0 |
| C10 |
N04 |
C19 |
H119 |
338.8 |
300.0 |
| C10 |
N04 |
C19 |
H219 |
98.8 |
60.0 |
| O26 |
N05 |
C11 |
O27 |
179.8 |
180.0 |
| C11 |
C10 |
N04 |
C19 |
228.9 |
186.0 |
| C11 |
C10 |
N04 |
HN04 |
108.9 |
5.9 |
| C10 |
C11 |
N05 |
O27 |
6.9 |
217.2 |
| C10 |
C11 |
C06 |
H06 |
179.9 |
180.3 |
| C11 |
C10 |
C09 |
H09 |
180.0 |
180.0 |
| C07 |
C12 |
N02 |
H102 |
179.4 |
0.0 |
| C07 |
C12 |
N02 |
H202 |
359.4 |
180.0 |
| C12 |
C07 |
C06 |
H06 |
0.5 |
359.6 |
| C14 |
C13 |
N01 |
HN01 |
323.9 |
0.3 |
| N01 |
C13 |
C14 |
H113 |
120.0 |
119.9 |
| N01 |
C13 |
C14 |
H213 |
240.0 |
240.0 |
| H113 |
C13 |
C14 |
H213 |
120.0 |
120.0 |
| C15 |
C14 |
C13 |
C18 |
179.4 |
180.0 |
| C13 |
C14 |
C18 |
C17 |
179.6 |
180.0 |
| C13 |
C14 |
C18 |
H18 |
359.6 |
360.0 |
| H113 |
C13 |
N01 |
HN01 |
83.9 |
120.3 |
| N01 |
C13 |
H113 |
C14 |
239.0 |
240.1 |
| N01 |
C13 |
H113 |
H213 |
119.5 |
120.0 |
| C14 |
C13 |
H113 |
H213 |
240.5 |
240.0 |
| H113 |
C13 |
C14 |
C18 |
108.2 |
330.1 |
| H213 |
C13 |
N01 |
HN01 |
203.9 |
240.3 |
| N01 |
C13 |
H213 |
C14 |
121.0 |
120.0 |
| N01 |
C13 |
H213 |
H113 |
240.5 |
240.0 |
| C14 |
C13 |
H213 |
H113 |
119.5 |
120.0 |
| H213 |
C13 |
C14 |
C18 |
348.2 |
210.0 |
| C18 |
C14 |
C13 |
H113 |
108.2 |
330.1 |
| C18 |
C14 |
C13 |
H213 |
348.2 |
210.0 |
| C14 |
C18 |
C17 |
H17 |
179.9 |
180.0 |
| C14 |
C15 |
N03 |
C16 |
359.9 |
0.1 |
| C15 |
C14 |
C13 |
H113 |
287.7 |
150.0 |
| C15 |
C14 |
C13 |
H213 |
167.6 |
30.0 |
| C13 |
C14 |
C15 |
C18 |
180.5 |
180.0 |
| C15 |
C14 |
C18 |
C17 |
0.1 |
0.0 |
| C15 |
C14 |
C18 |
H18 |
180.1 |
180.0 |
| C15 |
N03 |
C16 |
C17 |
0.1 |
360.0 |
| C15 |
N03 |
C16 |
H16 |
180.1 |
180.0 |
| H15 |
C15 |
N03 |
C16 |
179.9 |
179.9 |
| H15 |
C15 |
C14 |
C18 |
180.0 |
180.0 |
| N03 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
| C14 |
C18 |
C17 |
C16 |
359.9 |
0.0 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| N03 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
| H16 |
C16 |
C17 |
H17 |
0.0 |
0.0 |
| H17 |
C17 |
C16 |
H16 |
0.0 |
0.0 |
| C14 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H16 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| C14 |
C18 |
H18 |
C17 |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
359.9 |
360.0 |
| C20 |
C19 |
N04 |
HN04 |
338.8 |
0.1 |
| N04 |
C19 |
C20 |
H119 |
120.0 |
120.0 |
| N04 |
C19 |
C20 |
H219 |
240.0 |
239.9 |
| H119 |
C19 |
C20 |
H219 |
120.0 |
119.9 |
| C21 |
C20 |
C19 |
H120 |
240.0 |
240.0 |
| C21 |
C20 |
C19 |
H220 |
120.0 |
120.0 |
| C19 |
C20 |
C21 |
C22 |
185.3 |
180.0 |
| C19 |
C20 |
C21 |
H121 |
305.3 |
300.0 |
| C19 |
C20 |
C21 |
H221 |
65.3 |
60.0 |
| H120 |
C20 |
C19 |
H220 |
240.0 |
240.0 |
| H119 |
C19 |
N04 |
HN04 |
98.8 |
120.0 |
| N04 |
C19 |
H119 |
C20 |
239.5 |
240.0 |
| N04 |
C19 |
H119 |
H219 |
119.7 |
120.0 |
| C20 |
C19 |
H119 |
H219 |
240.3 |
240.0 |
| H119 |
C19 |
C20 |
C21 |
127.3 |
60.0 |
| H119 |
C19 |
C20 |
H120 |
247.3 |
180.0 |
| H119 |
C19 |
C20 |
H220 |
7.3 |
299.9 |
| H219 |
C19 |
N04 |
HN04 |
218.8 |
240.0 |
| N04 |
C19 |
H219 |
C20 |
120.5 |
120.0 |
| N04 |
C19 |
H219 |
H119 |
240.3 |
240.0 |
| C20 |
C19 |
H219 |
H119 |
119.7 |
119.9 |
| H219 |
C19 |
C20 |
C21 |
7.3 |
300.0 |
| H219 |
C19 |
C20 |
H120 |
127.3 |
60.0 |
| H219 |
C19 |
C20 |
H220 |
247.3 |
180.0 |
| C21 |
C20 |
C19 |
H119 |
127.3 |
60.0 |
| C21 |
C20 |
C19 |
H219 |
7.3 |
300.0 |
| C19 |
C20 |
C21 |
H120 |
120.0 |
120.0 |
| C19 |
C20 |
C21 |
H220 |
240.0 |
240.0 |
| H120 |
C20 |
C21 |
H220 |
120.0 |
120.0 |
| C22 |
C21 |
C20 |
H121 |
240.0 |
240.0 |
| C22 |
C21 |
C20 |
H221 |
120.0 |
119.9 |
| C20 |
C21 |
C22 |
O25 |
94.5 |
0.0 |
| C20 |
C21 |
C22 |
O24 |
274.2 |
180.0 |
| H121 |
C21 |
C20 |
H221 |
240.0 |
240.0 |
| H120 |
C20 |
C19 |
H119 |
247.3 |
180.0 |
| H120 |
C20 |
C19 |
H219 |
127.3 |
60.0 |
| C19 |
C20 |
H120 |
C21 |
240.3 |
240.0 |
| C19 |
C20 |
H120 |
H220 |
120.2 |
120.0 |
| C21 |
C20 |
H120 |
H220 |
239.8 |
240.0 |
| H120 |
C20 |
C21 |
C22 |
65.3 |
60.0 |
| H120 |
C20 |
C21 |
H121 |
185.3 |
180.0 |
| H120 |
C20 |
C21 |
H221 |
305.3 |
300.0 |
| H220 |
C20 |
C19 |
H119 |
7.3 |
299.9 |
| H220 |
C20 |
C19 |
H219 |
247.3 |
180.0 |
| C19 |
C20 |
H220 |
C21 |
119.7 |
120.0 |
| C19 |
C20 |
H220 |
H120 |
239.8 |
240.0 |
| C21 |
C20 |
H220 |
H120 |
120.1 |
120.0 |
| H220 |
C20 |
C21 |
C22 |
305.3 |
300.0 |
| H220 |
C20 |
C21 |
H121 |
65.3 |
60.0 |
| H220 |
C20 |
C21 |
H221 |
185.2 |
180.0 |
| C22 |
C21 |
C20 |
H120 |
65.3 |
60.0 |
| C22 |
C21 |
C20 |
H220 |
305.3 |
300.0 |
| C20 |
C21 |
C22 |
H121 |
120.0 |
120.0 |
| C20 |
C21 |
C22 |
H221 |
240.0 |
240.0 |
| H121 |
C21 |
C22 |
H221 |
120.0 |
120.0 |
| O24 |
C22 |
C21 |
O25 |
179.7 |
180.0 |
| C21 |
C22 |
O24 |
H19 |
180.3 |
180.0 |
| H121 |
C21 |
C20 |
H120 |
185.3 |
180.0 |
| H121 |
C21 |
C20 |
H220 |
65.3 |
60.0 |
| C20 |
C21 |
H121 |
C22 |
239.4 |
240.0 |
| C20 |
C21 |
H121 |
H221 |
119.7 |
120.0 |
| C22 |
C21 |
H121 |
H221 |
240.3 |
240.1 |
| H121 |
C21 |
C22 |
O25 |
334.5 |
240.0 |
| H121 |
C21 |
C22 |
O24 |
154.2 |
60.0 |
| H221 |
C21 |
C20 |
H120 |
305.3 |
300.0 |
| H221 |
C21 |
C20 |
H220 |
185.2 |
180.0 |
| C20 |
C21 |
H221 |
C22 |
120.7 |
120.0 |
| C20 |
C21 |
H221 |
H121 |
240.3 |
240.0 |
| C22 |
C21 |
H221 |
H121 |
119.7 |
120.0 |
| H221 |
C21 |
C22 |
O25 |
214.5 |
120.0 |
| H221 |
C21 |
C22 |
O24 |
34.2 |
300.0 |
| O25 |
C22 |
C21 |
H121 |
334.5 |
240.0 |
| O25 |
C22 |
C21 |
H221 |
214.5 |
120.0 |
| C21 |
C22 |
O25 |
O24 |
179.7 |
180.0 |
| O25 |
C22 |
O24 |
H19 |
360.0 |
0.0 |
| O24 |
C22 |
C21 |
H121 |
154.2 |
60.0 |
| O24 |
C22 |
C21 |
H221 |
34.2 |
300.0 |
| C21 |
C22 |
O24 |
O25 |
180.3 |
180.0 |
| O23 |
C12 |
N02 |
H102 |
360.0 |
180.1 |
| O23 |
C12 |
N02 |
H202 |
180.0 |
360.0 |
| C11 |
N05 |
O26 |
O27 |
180.2 |
180.0 |
| H19 |
O24 |
C22 |
O25 |
360.0 |
0.0 |