Atom Nomenclature for 24P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 24P

Atom Name (V3) Atom Name (V2)
CAB CAB
CAA CAA
CAF CAF
CAE CAE
CAD CAD
CAC CAC
CAG CAG
CAH CAH
CAM CAM
CAL CAL
CAI CAI
CAJ CAJ
CAK CAK
OAN OAN
CAO CAO
CAP CAP
CAQ CAQ
CAR CAR
CAS CAS
NAT NAT
HAB HAB
HAA HAA
HAF HAF
HAE HAE
HAD HAD
HAG HAG
HAGA HAGA
HAM HAM
HAL HAL
HAI HAI
HAJ HAJ
HAO HAO
HAOA HAOA
HAP HAP
HAQ HAQ
HAQA HAQA
HAR HAR
HARA HARA
HAS HAS
HASA HASA
HNAT HNAT