PDB Chemical Component 24M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 24M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.455 1.469
N H 1.000 1.009
CA C5 1.547 1.531
CA C36 1.551 1.530
CA HA 1.100 1.090
C5 O7 1.432 1.429
C5 C9 1.514 1.530
C5 H5 1.100 1.089
O7 HO7 0.950 0.966
C9 C11 1.563 1.539
C9 C19 1.549 1.542
C9 H9 1.100 1.090
C11 C13 1.525 1.543
C11 C 1.511 1.506
C11 H11 1.100 1.091
C13 C16 1.539 1.549
C13 H131 1.100 1.090
C13 H132 1.100 1.090
C16 C19 1.555 1.549
C16 H161 1.100 1.090
C16 H162 1.100 1.090
C19 H191 1.100 1.090
C19 H192 1.100 1.090
C O 1.220 1.209
C36 C39 1.541 1.531
C36 H361 1.100 1.090
C36 H362 1.100 1.090
C39 C41 1.546 1.529
C39 C45 1.547 1.530
C39 H39 1.100 1.089
C41 H411 1.100 1.091
C41 H412 1.100 1.090
C41 H413 1.100 1.090
C45 H451 1.100 1.089
C45 H452 1.100 1.090
C45 H453 1.100 1.090
N H2 1.000 1.008
C OXT   1.342
OXT HXT   0.967

Bond Angles for 24M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 111.0
N CA C5 113.0 109.5
N CA C36 109.5 109.5
N CA HA 107.7 109.5
CA N H2 109.5 111.0
H N H2 109.4 111.0
C5 CA C36 111.3 109.5
C5 CA HA 105.7 109.4
CA C5 O7 112.0 109.4
CA C5 C9 112.6 109.5
CA C5 H5 105.2 109.5
C36 CA HA 109.5 109.5
CA C36 C39 108.4 109.4
CA C36 H361 109.8 109.5
CA C36 H362 109.8 109.5
O7 C5 C9 108.5 109.5
O7 C5 H5 109.6 109.5
C5 O7 HO7 109.5 114.0
C9 C5 H5 108.9 109.5
C5 C9 C11 104.5 110.0
C5 C9 C19 108.8 110.0
C5 C9 H9 111.9 110.0
C11 C9 C19 105.8 106.6
C11 C9 H9 114.7 110.0
C9 C11 C13 106.8 106.6
C9 C11 C 111.6 110.0
C9 C11 H11 110.9 110.0
C19 C9 H9 110.7 110.1
C9 C19 C16 107.2 104.2
C9 C19 H191 110.3 110.5
C9 C19 H192 110.2 110.5
C13 C11 C 112.3 110.0
C13 C11 H11 110.2 110.0
C11 C13 C16 105.6 104.2
C11 C13 H131 110.8 110.5
C11 C13 H132 110.8 110.5
C C11 H11 105.2 110.0
C11 C O 120.0 120.0
C11 C OXT   120.0
C16 C13 H131 110.8 110.5
C16 C13 H132 110.8 110.4
C13 C16 C19 106.9 102.8
C13 C16 H161 110.3 110.7
C13 C16 H162 110.3 110.8
H131 C13 H132 108.1 110.6
C19 C16 H161 110.3 110.8
C19 C16 H162 110.3 110.8
C16 C19 H191 110.2 110.5
C16 C19 H192 110.3 110.5
H161 C16 H162 108.6 110.8
H191 C19 H192 108.7 110.5
O C OXT   120.0
C39 C36 H361 109.8 109.5
C39 C36 H362 109.8 109.5
C36 C39 C41 109.3 109.4
C36 C39 C45 110.6 109.5
C36 C39 H39 108.8 109.5
H361 C36 H362 109.1 109.5
C41 C39 C45 109.5 109.5
C41 C39 H39 110.0 109.5
C39 C41 H411 109.5 109.5
C39 C41 H412 109.5 109.5
C39 C41 H413 109.4 109.5
C45 C39 H39 108.6 109.4
C39 C45 H451 109.5 109.5
C39 C45 H452 109.5 109.4
C39 C45 H453 109.5 109.5
H411 C41 H412 109.5 109.4
H411 C41 H413 109.5 109.5
H412 C41 H413 109.5 109.4
H451 C45 H452 109.4 109.5
H451 C45 H453 109.5 109.5
H452 C45 H453 109.5 109.4
C OXT HXT   117.0

Torsion Angles for 24M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 240.0 236.1
C5 CA N C36 124.6 120.0
C5 CA N HA 243.6 240.0
N CA C5 O7 298.7 300.0
N CA C5 C9 61.3 60.0
N CA C5 H5 179.7 180.0
C36 CA N HA 119.0 120.0
N CA C36 C39 297.3 294.9
N CA C36 H361 57.3 54.8
N CA C36 H362 177.3 174.9
H N CA C5 180.0 66.8
H N CA C36 55.4 306.8
H N CA HA 296.4 186.7
CA N H H2 120.0 123.9
C5 CA N H 180.0 66.8
N CA C5 C36 236.4 240.0
N CA C5 HA 117.5 120.0
C5 CA N H2 300.0 190.7
C36 CA C5 HA 241.2 240.0
C5 CA C36 C39 171.7 174.8
C5 CA C36 H361 291.7 294.8
C5 CA C36 H362 51.7 54.9
O7 C5 CA C9 237.4 240.0
O7 C5 CA H5 119.0 120.0
CA C5 O7 HO7 180.0 60.0
C9 C5 CA H5 241.5 239.9
CA C5 C9 C11 168.1 180.0
CA C5 C9 C19 280.7 297.2
CA C5 C9 H9 43.5 58.7
C36 CA N H 55.4 306.8
N CA C36 C5 125.6 120.0
N CA C36 HA 242.1 240.0
C36 CA N H2 175.4 70.7
C5 CA C36 HA 116.5 120.0
C36 CA C5 O7 62.3 60.0
C36 CA C5 C9 184.9 180.0
C36 CA C5 H5 303.4 300.1
C39 C36 CA H361 240.0 240.0
C39 C36 CA H362 120.0 120.0
CA C36 C39 C41 287.1 174.1
CA C36 C39 C45 166.5 294.2
CA C36 C39 H39 47.2 54.1
H361 C36 CA H362 240.0 239.9
HA CA N H 296.4 186.7
N CA HA C5 239.0 240.0
N CA HA C36 119.0 120.0
HA CA N H2 56.4 310.7
C5 CA HA C36 240.0 240.0
HA CA C5 O7 181.1 180.0
HA CA C5 C9 303.7 300.0
HA CA C5 H5 62.2 60.0
HA CA C36 C39 55.2 54.9
HA CA C36 H361 175.2 174.8
HA CA C36 H362 295.2 294.9
O7 C5 CA C36 62.3 60.0
O7 C5 CA HA 181.1 180.0
CA C5 O7 C9 124.9 120.0
CA C5 O7 H5 243.7 240.0
C9 C5 O7 H5 118.8 120.1
O7 C5 C9 C11 292.6 300.0
O7 C5 C9 C19 45.3 57.1
O7 C5 C9 H9 168.0 178.6
C9 C5 CA C36 184.9 180.0
C9 C5 CA HA 303.7 300.0
CA C5 C9 O7 235.5 240.1
CA C5 C9 H5 116.3 120.0
O7 C5 C9 H5 240.8 239.9
C9 C5 O7 HO7 55.1 300.0
C11 C9 C5 C19 247.4 242.8
C11 C9 C5 H9 124.6 121.4
C5 C9 C11 C13 136.4 119.3
C5 C9 C11 C 259.4 238.6
C5 C9 C11 H11 16.4 0.0
C19 C9 C5 H9 237.3 238.5
C5 C9 C19 C16 241.9 217.1
C5 C9 C19 H191 2.0 335.8
C5 C9 C19 H192 121.9 98.4
H5 C5 CA C36 303.4 300.1
H5 C5 CA HA 62.2 60.0
CA C5 H5 O7 120.5 119.9
CA C5 H5 C9 239.1 240.0
O7 C5 H5 C9 118.6 120.0
H5 C5 O7 HO7 296.3 179.9
H5 C5 C9 C11 51.8 60.0
H5 C5 C9 C19 164.5 177.2
H5 C5 C9 H9 287.2 298.6
HO7 O7 C5 C9 55.1 300.0
HO7 O7 C5 H5 296.3 179.9
C11 C9 C5 H5 51.8 60.0
C5 C9 C11 C19 114.8 119.3
C5 C9 C11 H9 237.2 238.7
C19 C9 C11 H9 122.3 119.4
C11 C9 C19 C16 353.7 336.4
C11 C9 C19 H191 113.7 95.1
C11 C9 C19 H192 233.7 217.7
C13 C11 C9 C 237.0 240.7
C13 C11 C9 H11 120.0 119.3
C9 C11 C13 C16 331.5 23.6
C9 C11 C13 H131 91.5 142.3
C9 C11 C13 H132 211.5 265.0
C C11 C9 H11 243.1 238.6
C9 C11 C O 323.0 360.0
C9 C11 C OXT   180.0
C19 C9 C5 H5 164.5 177.2
C5 C9 C19 C11 248.2 240.7
C5 C9 C19 H9 123.4 121.4
C11 C9 C19 H9 235.2 240.7
C19 C9 C11 C13 21.6 360.0
C19 C9 C11 C 144.6 119.3
C19 C9 C11 H11 261.5 240.7
C13 C16 C19 C9 349.0 37.9
C9 C19 C16 H161 229.0 279.6
C9 C19 C16 H162 108.9 156.3
C16 C19 C9 H191 240.0 241.3
C16 C19 C9 H192 120.0 118.7
H191 C19 C9 H192 240.0 237.4
H9 C9 C5 H5 287.2 298.6
C5 C9 H9 C11 118.7 121.4
C5 C9 H9 C19 238.4 238.6
C11 C9 H9 C19 119.6 117.2
H9 C9 C11 C13 259.2 240.6
H9 C9 C11 C 22.3 359.9
H9 C9 C11 H11 139.2 121.3
H9 C9 C19 C16 118.5 95.7
H9 C9 C19 H191 238.5 214.4
H9 C9 C19 H192 358.5 337.0
C13 C11 C9 C19 21.6 360.0
C13 C11 C9 H9 259.2 240.6
C9 C11 C13 C 122.6 119.3
C9 C11 C13 H11 239.5 240.7
C C11 C13 H11 116.9 121.4
C13 C11 C O 82.8 117.2
C13 C11 C OXT   297.2
C16 C13 C11 H131 240.0 241.3
C16 C13 C11 H132 120.0 118.6
C11 C13 C16 C19 24.4 322.1
C11 C13 C16 H161 144.5 80.4
C11 C13 C16 H162 264.5 203.7
H131 C13 C11 H132 240.0 237.3
C C11 C9 C19 144.6 119.3
C C11 C9 H9 22.3 359.9
C9 C11 C C13 240.2 242.8
C9 C11 C H11 120.3 121.4
C13 C11 C H11 240.2 238.6
C C11 C13 C16 208.9 264.3
C C11 C13 H131 328.9 23.0
C C11 C13 H132 88.9 145.7
O C C11 OXT   179.9
C11 C OXT HXT   180.0
H11 C11 C9 C19 261.5 240.7
H11 C11 C9 H9 139.2 121.3
C9 C11 H11 C13 118.0 117.2
C9 C11 H11 C 239.2 238.6
C13 C11 H11 C 121.2 121.4
H11 C11 C13 C16 92.0 142.9
H11 C11 C13 H131 212.0 261.6
H11 C11 C13 H132 332.0 24.3
H11 C11 C O 202.7 238.6
H11 C11 C OXT   58.6
C9 C19 C16 C13 349.0 37.9
C16 C13 C11 C 208.9 264.3
C16 C13 C11 H11 92.0 142.9
C11 C13 C16 H131 120.0 118.7
C11 C13 C16 H132 240.0 241.4
H131 C13 C16 H132 120.0 122.7
C19 C16 C13 H161 240.0 241.7
C19 C16 C13 H162 120.0 118.4
C13 C16 C19 H191 228.9 279.2
C13 C16 C19 H192 109.0 156.6
H161 C16 C13 H162 240.0 236.7
H131 C13 C11 C 328.9 23.0
H131 C13 C11 H11 212.0 261.6
C11 C13 H131 C16 243.2 245.2
C11 C13 H131 H132 121.6 122.6
C16 C13 H131 H132 238.4 237.4
H131 C13 C16 C19 264.5 203.4
H131 C13 C16 H161 24.5 321.7
H131 C13 C16 H162 144.5 85.0
H132 C13 C11 C 88.9 145.7
H132 C13 C11 H11 332.0 24.3
C11 C13 H132 C16 116.8 114.7
C11 C13 H132 H131 238.4 237.4
C16 C13 H132 H131 121.6 122.6
H132 C13 C16 C19 144.4 80.7
H132 C13 C16 H161 264.4 199.0
H132 C13 C16 H162 24.4 322.4
C16 C19 C9 H9 118.5 95.7
C9 C19 C16 H191 120.0 118.7
C9 C19 C16 H192 240.0 241.3
C19 C16 C13 H131 264.5 203.4
C19 C16 C13 H132 144.4 80.7
C13 C16 C19 H161 120.0 118.3
C13 C16 C19 H162 240.0 241.6
H161 C16 C19 H162 120.1 123.3
H191 C19 C16 H192 120.0 122.6
H161 C16 C13 H131 24.5 321.7
H161 C16 C13 H132 264.4 199.0
C13 C16 H161 C19 242.1 246.7
C13 C16 H161 H162 121.0 123.3
C19 C16 H161 H162 238.9 236.7
H161 C16 C19 H191 109.0 160.9
H161 C16 C19 H192 349.0 38.4
H162 C16 C13 H131 144.5 85.0
H162 C16 C13 H132 24.4 322.4
C13 C16 H162 C19 117.9 113.4
C13 C16 H162 H161 239.0 236.7
C19 C16 H162 H161 121.1 123.3
H162 C16 C19 H191 348.9 37.6
H162 C16 C19 H192 228.9 275.0
H191 C19 C9 H9 238.5 214.4
C9 C19 H191 C16 241.8 245.2
C9 C19 H191 H192 120.9 122.6
H191 C19 C16 H161 109.0 160.9
H191 C19 C16 H162 348.9 37.6
C16 C19 H191 H192 239.1 237.4
H192 C19 C9 H9 358.5 337.0
C9 C19 H192 C16 118.1 114.8
C9 C19 H192 H191 239.1 237.4
H192 C19 C16 H161 349.0 38.4
H192 C19 C16 H162 228.9 275.0
C16 C19 H192 H191 120.9 122.6
O C C11 H11 202.7 238.6
C11 C O OXT   180.1
O C OXT HXT   0.0
C39 C36 CA HA 55.2 54.9
CA C36 C39 H361 120.0 120.0
CA C36 C39 H362 240.0 240.0
H361 C36 C39 H362 120.0 120.0
C41 C39 C36 C45 120.6 240.0
C41 C39 C36 H39 239.9 120.0
C36 C39 C41 H411 180.0 59.6
C36 C39 C41 H412 300.0 179.5
C36 C39 C41 H413 60.0 299.5
C45 C39 C36 H39 119.2 240.1
C36 C39 C45 H451 180.0 60.0
C36 C39 C45 H452 300.0 180.0
C36 C39 C45 H453 60.0 300.0
H361 C36 CA HA 175.2 174.8
CA C36 H361 C39 240.8 240.0
CA C36 H361 H362 120.4 120.0
C39 C36 H361 H362 239.6 240.0
H361 C36 C39 C41 167.1 54.2
H361 C36 C39 C45 46.5 174.2
H361 C36 C39 H39 287.2 294.1
H362 C36 CA HA 295.2 294.9
CA C36 H362 C39 119.2 120.0
CA C36 H362 H361 239.6 240.0
C39 C36 H362 H361 120.4 120.0
H362 C36 C39 C41 47.1 294.1
H362 C36 C39 C45 286.5 54.2
H362 C36 C39 H39 167.3 174.1
C41 C39 C36 H361 167.1 54.2
C41 C39 C36 H362 47.1 294.1
C36 C39 C41 C45 238.7 120.0
C36 C39 C41 H39 119.4 240.0
C45 C39 C41 H39 240.7 120.0
C41 C39 C45 H451 59.5 180.0
C41 C39 C45 H452 179.4 300.0
C41 C39 C45 H453 299.5 59.9
H411 C41 C39 H412 240.0 240.0
H411 C41 C39 H413 120.0 120.1
H412 C41 C39 H413 240.0 240.0
C45 C39 C36 H361 46.5 174.2
C45 C39 C36 H362 286.5 54.2
C36 C39 C45 C41 120.5 240.0
C36 C39 C45 H39 240.6 120.0
C41 C39 C45 H39 120.1 239.9
C45 C39 C41 H411 301.3 299.6
C45 C39 C41 H412 61.3 59.6
C45 C39 C41 H413 181.3 179.5
H451 C45 C39 H452 240.0 240.0
H451 C45 C39 H453 120.0 120.0
H452 C45 C39 H453 240.0 240.1
H39 C39 C36 H361 287.2 294.1
H39 C39 C36 H362 167.3 174.1
C36 C39 H39 C41 240.3 120.0
C36 C39 H39 C45 120.5 240.1
C41 C39 H39 C45 240.2 120.1
H39 C39 C41 H411 60.6 179.6
H39 C39 C41 H412 180.6 299.5
H39 C39 C41 H413 300.6 59.5
H39 C39 C45 H451 299.4 300.0
H39 C39 C45 H452 59.3 60.1
H39 C39 C45 H453 179.4 180.0
H411 C41 C39 C45 301.3 299.6
H411 C41 C39 H39 60.6 179.6
C39 C41 H411 H412 120.0 120.0
C39 C41 H411 H413 240.0 239.9
H412 C41 H411 H413 120.0 119.9
H412 C41 C39 C45 61.3 59.6
H412 C41 C39 H39 180.6 299.5
C39 C41 H412 H411 240.0 240.0
C39 C41 H412 H413 120.0 120.0
H411 C41 H412 H413 240.0 240.1
H413 C41 C39 C45 181.3 179.5
H413 C41 C39 H39 300.6 59.5
C39 C41 H413 H411 120.0 120.1
C39 C41 H413 H412 240.0 240.0
H411 C41 H413 H412 120.0 119.9
H451 C45 C39 H39 299.4 300.0
C39 C45 H451 H452 120.0 120.0
C39 C45 H451 H453 240.0 240.0
H452 C45 H451 H453 120.0 119.9
H452 C45 C39 H39 59.3 60.1
C39 C45 H452 H451 240.0 239.9
C39 C45 H452 H453 120.0 119.9
H451 C45 H452 H453 240.0 240.0
H453 C45 C39 H39 179.4 180.0
C39 C45 H453 H451 120.0 120.1
C39 C45 H453 H452 240.0 240.1
H451 C45 H453 H452 120.0 120.0
CA N H2 H 240.0 236.1
H2 N CA C5 300.0 190.7
H2 N CA C36 175.4 70.7
H2 N CA HA 56.4 310.7
OXT C C11 H11   58.6
C11 C OXT O   179.9