Atom Nomenclature for 22T

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 22T

Atom Name (V3) Atom Name (V2)
CL21 CL21
C14 C14
C13 C13
C10 C10
C11 C11
O13 O13
N20 N20
C12 C12
C9 C9
C8 C8
C7 C7
O9 O9
C5 C5
C6 C6
C15 C15
C4 C4
C3 C3
N1 N1
H13 H13
H20 H20
H12 H12
H15 H15
H8 H8
H5 H5
H61C H61C
H62C H62C
H41C H41C
H42C H42C
H1 H1
H31C H31C
H32C H32C