PDB Chemical Component 22A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 22A
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.347 |
1.358 |
| N1 |
HN1 |
1.000 |
0.970 |
| C2 |
N3 |
1.342 |
1.301 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
N3 |
1.359 |
1.355 |
| C4 |
C9 |
1.383 |
1.410 |
| C5 |
C4 |
1.414 |
1.400 |
| C6 |
N1 |
1.353 |
1.351 |
| C6 |
C5 |
1.460 |
1.410 |
| O6 |
C6 |
1.253 |
1.220 |
| N7 |
C5 |
1.445 |
1.376 |
| N7 |
C8 |
1.377 |
1.361 |
| C8 |
C9 |
1.405 |
1.349 |
| C8 |
H8 |
1.079 |
1.080 |
| C9 |
C10 |
1.508 |
1.507 |
| N1' |
C2' |
1.467 |
1.469 |
| N1' |
HN1' |
1.000 |
1.009 |
| C10 |
N1' |
1.465 |
1.469 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.090 |
| C2' |
C4' |
1.538 |
1.529 |
| C2' |
C3' |
1.523 |
1.529 |
| C2' |
H2' |
1.100 |
1.090 |
| C3' |
O6' |
1.444 |
1.429 |
| C3' |
H3' |
1.100 |
1.090 |
| C3' |
H3'A |
1.100 |
1.090 |
| C4' |
H4' |
1.100 |
1.090 |
| C4' |
H4'A |
1.100 |
1.090 |
| O5' |
C4' |
1.440 |
1.429 |
| O5' |
HO5' |
0.950 |
0.966 |
| O6' |
HO6' |
0.950 |
0.967 |
| N7 |
H14 |
1.000 |
0.970 |
Bond Angles for 22A
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
HN1 |
118.8 |
119.8 |
| N1 |
C2 |
N3 |
122.5 |
122.1 |
| N1 |
C2 |
H2 |
118.7 |
118.9 |
| C6 |
N1 |
HN1 |
118.8 |
119.7 |
| N3 |
C2 |
H2 |
118.8 |
118.9 |
| C5 |
C4 |
C9 |
108.2 |
106.6 |
| C4 |
C9 |
C8 |
105.4 |
107.9 |
| C4 |
C9 |
C10 |
128.5 |
126.1 |
| N7 |
C8 |
C9 |
113.5 |
109.4 |
| N7 |
C8 |
H8 |
123.3 |
125.3 |
| C8 |
N7 |
H14 |
128.6 |
125.7 |
| C9 |
C8 |
H8 |
123.2 |
125.3 |
| C8 |
C9 |
C10 |
125.9 |
126.0 |
| C9 |
C10 |
N1' |
106.8 |
109.5 |
| C9 |
C10 |
H10 |
110.4 |
109.5 |
| C9 |
C10 |
H10A |
110.4 |
109.5 |
| C2' |
N1' |
HN1' |
106.2 |
111.0 |
| C10 |
N1' |
C2' |
119.6 |
111.1 |
| N1' |
C2' |
C4' |
114.3 |
109.5 |
| N1' |
C2' |
C3' |
110.0 |
109.5 |
| N1' |
C2' |
H2' |
105.9 |
109.4 |
| C10 |
N1' |
HN1' |
106.2 |
111.0 |
| H10 |
C10 |
H10A |
108.5 |
109.4 |
| C3' |
C2' |
C4' |
110.0 |
109.5 |
| C4' |
C2' |
H2' |
105.9 |
109.5 |
| C2' |
C4' |
H4' |
107.8 |
109.5 |
| C2' |
C4' |
H4'A |
107.8 |
109.5 |
| C3' |
C2' |
H2' |
110.6 |
109.4 |
| C2' |
C3' |
O6' |
112.5 |
109.5 |
| C2' |
C3' |
H3' |
108.4 |
109.5 |
| C2' |
C3' |
H3'A |
108.5 |
109.5 |
| O6' |
C3' |
H3' |
108.5 |
109.5 |
| O6' |
C3' |
H3'A |
108.5 |
109.4 |
| C3' |
O6' |
HO6' |
109.5 |
114.1 |
| H3' |
C3' |
H3'A |
110.4 |
109.5 |
| H4' |
C4' |
H4'A |
111.1 |
109.5 |
| O5' |
C4' |
H4' |
107.8 |
109.4 |
| O5' |
C4' |
H4'A |
107.8 |
109.4 |
Torsion Angles for 22A
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
HN1 |
180.0 |
180.3 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| HN1 |
N1 |
C2 |
N3 |
181.3 |
180.0 |
| HN1 |
N1 |
C2 |
H2 |
1.3 |
360.0 |
| N3 |
C2 |
N1 |
HN1 |
181.3 |
180.0 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| H2 |
C2 |
N1 |
HN1 |
1.3 |
360.0 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
179.4 |
180.0 |
| N7 |
C8 |
C9 |
C4 |
0.8 |
0.0 |
| C4 |
C9 |
C8 |
H8 |
180.8 |
180.0 |
| C8 |
C9 |
C4 |
C10 |
175.7 |
179.9 |
| C4 |
C9 |
C10 |
N1' |
99.8 |
80.0 |
| C4 |
C9 |
C10 |
H10 |
219.8 |
200.0 |
| C4 |
C9 |
C10 |
H10A |
339.8 |
320.0 |
| C5 |
C4 |
C9 |
C8 |
352.0 |
360.0 |
| C5 |
C4 |
C9 |
C10 |
176.3 |
180.1 |
| C2 |
N1 |
C6 |
HN1 |
180.0 |
179.7 |
| C6 |
N1 |
C2 |
H2 |
181.3 |
180.3 |
| C5 |
C6 |
N1 |
HN1 |
171.9 |
179.8 |
| C6 |
C5 |
C4 |
C9 |
173.7 |
179.8 |
| O6 |
C6 |
N1 |
HN1 |
1.9 |
0.3 |
| N7 |
C5 |
C4 |
C9 |
12.3 |
360.0 |
| C4 |
C9 |
C8 |
N7 |
0.8 |
0.0 |
| C9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| N7 |
C8 |
C9 |
C10 |
176.6 |
180.0 |
| C4 |
C9 |
C8 |
C10 |
184.2 |
180.1 |
| N7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| C9 |
C8 |
N7 |
H14 |
186.5 |
180.0 |
| C8 |
C9 |
C10 |
N1' |
284.9 |
260.1 |
| C8 |
C9 |
C10 |
H10 |
44.9 |
20.1 |
| C8 |
C9 |
C10 |
H10A |
164.9 |
140.1 |
| N7 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
| H8 |
C8 |
N7 |
H14 |
6.5 |
0.0 |
| H8 |
C8 |
C9 |
C10 |
356.6 |
359.9 |
| C4 |
C9 |
C10 |
C8 |
174.8 |
179.9 |
| C10 |
C9 |
C8 |
H8 |
356.6 |
359.9 |
| C9 |
C10 |
N1' |
C2' |
290.5 |
180.0 |
| C9 |
C10 |
N1' |
HN1' |
170.5 |
56.0 |
| H10 |
C10 |
C9 |
H10A |
240.0 |
240.0 |
| C10 |
N1' |
C2' |
HN1' |
240.0 |
236.0 |
| C3' |
C2' |
N1' |
C4' |
124.3 |
239.9 |
| C4' |
C2' |
N1' |
H2' |
116.2 |
240.0 |
| N1' |
C2' |
C4' |
H4' |
134.5 |
54.9 |
| N1' |
C2' |
C4' |
H4'A |
254.5 |
175.0 |
| C3' |
C2' |
N1' |
H2' |
240.5 |
119.9 |
| N1' |
C2' |
C3' |
O6' |
319.6 |
65.0 |
| N1' |
C2' |
C3' |
H3' |
79.6 |
185.0 |
| N1' |
C2' |
C3' |
H3'A |
199.6 |
305.1 |
| C10 |
N1' |
HN1' |
C2' |
128.4 |
124.0 |
| HN1' |
N1' |
C2' |
C4' |
260.9 |
329.1 |
| HN1' |
N1' |
C2' |
C3' |
25.2 |
209.0 |
| HN1' |
N1' |
C2' |
H2' |
144.7 |
89.1 |
| C9 |
C10 |
N1' |
H10 |
120.0 |
120.1 |
| C9 |
C10 |
N1' |
H10A |
240.0 |
240.0 |
| C2' |
N1' |
C10 |
HN1' |
120.0 |
124.0 |
| C10 |
N1' |
C2' |
C4' |
140.9 |
205.0 |
| C10 |
N1' |
C2' |
C3' |
265.2 |
85.0 |
| C10 |
N1' |
C2' |
H2' |
24.7 |
325.0 |
| C9 |
C10 |
H10 |
N1' |
242.2 |
239.9 |
| C9 |
C10 |
H10 |
H10A |
121.1 |
120.0 |
| H10 |
C10 |
N1' |
C2' |
170.5 |
60.0 |
| H10 |
C10 |
N1' |
HN1' |
50.5 |
296.0 |
| C9 |
C10 |
H10A |
N1' |
117.8 |
120.0 |
| C9 |
C10 |
H10A |
H10 |
238.9 |
240.0 |
| H10A |
C10 |
N1' |
C2' |
50.5 |
300.0 |
| H10A |
C10 |
N1' |
HN1' |
290.5 |
176.1 |
| C4' |
C2' |
N1' |
HN1' |
260.9 |
329.1 |
| N1' |
C2' |
C4' |
C3' |
124.3 |
239.9 |
| N1' |
C2' |
C4' |
H2' |
243.8 |
120.0 |
| C3' |
C2' |
C4' |
H2' |
119.5 |
240.0 |
| C4' |
C2' |
C3' |
O6' |
86.4 |
304.9 |
| C4' |
C2' |
C3' |
H3' |
206.4 |
65.0 |
| C4' |
C2' |
C3' |
H3'A |
326.4 |
185.0 |
| H4' |
C4' |
C2' |
H4'A |
240.0 |
240.0 |
| O5' |
C4' |
C2' |
H4' |
240.0 |
240.0 |
| O5' |
C4' |
C2' |
H4'A |
120.0 |
120.0 |
| C3' |
C2' |
N1' |
HN1' |
25.2 |
209.0 |
| N1' |
C2' |
C3' |
C4' |
233.2 |
120.1 |
| N1' |
C2' |
C3' |
H2' |
116.6 |
240.1 |
| C4' |
C2' |
C3' |
H2' |
243.4 |
120.0 |
| C3' |
C2' |
C4' |
H4' |
10.2 |
175.0 |
| C3' |
C2' |
C4' |
H4'A |
130.2 |
295.1 |
| O6' |
C3' |
C2' |
H3' |
240.0 |
240.0 |
| O6' |
C3' |
C2' |
H3'A |
120.0 |
119.9 |
| C2' |
C3' |
O6' |
HO6' |
180.0 |
180.0 |
| H3' |
C3' |
C2' |
H3'A |
240.0 |
240.0 |
| H2' |
C2' |
N1' |
HN1' |
144.7 |
89.1 |
| N1' |
C2' |
H2' |
C4' |
121.7 |
240.0 |
| N1' |
C2' |
H2' |
C3' |
240.9 |
120.0 |
| C3' |
C2' |
H2' |
C4' |
240.9 |
120.0 |
| H2' |
C2' |
C4' |
H4' |
250.7 |
295.0 |
| H2' |
C2' |
C4' |
H4'A |
10.7 |
55.0 |
| H2' |
C2' |
C3' |
O6' |
203.0 |
185.0 |
| H2' |
C2' |
C3' |
H3' |
323.0 |
305.0 |
| H2' |
C2' |
C3' |
H3'A |
83.0 |
65.0 |
| O6' |
C3' |
C2' |
C4' |
86.4 |
304.9 |
| O6' |
C3' |
C2' |
H2' |
203.0 |
185.0 |
| C2' |
C3' |
O6' |
H3' |
120.0 |
120.0 |
| C2' |
C3' |
O6' |
H3'A |
240.0 |
240.0 |
| H3' |
C3' |
O6' |
H3'A |
120.0 |
120.0 |
| H3' |
C3' |
C2' |
C4' |
206.4 |
65.0 |
| H3' |
C3' |
C2' |
H2' |
323.0 |
305.0 |
| C2' |
C3' |
H3' |
O6' |
237.5 |
240.0 |
| C2' |
C3' |
H3' |
H3'A |
118.8 |
120.1 |
| O6' |
C3' |
H3' |
H3'A |
241.2 |
240.1 |
| H3' |
C3' |
O6' |
HO6' |
60.0 |
60.0 |
| H3'A |
C3' |
C2' |
C4' |
326.4 |
185.0 |
| H3'A |
C3' |
C2' |
H2' |
83.0 |
65.0 |
| C2' |
C3' |
H3'A |
O6' |
122.5 |
120.0 |
| C2' |
C3' |
H3'A |
H3' |
241.3 |
239.9 |
| O6' |
C3' |
H3'A |
H3' |
118.8 |
120.0 |
| H3'A |
C3' |
O6' |
HO6' |
300.0 |
300.0 |
| H4' |
C4' |
C2' |
H2' |
250.7 |
295.0 |
| C2' |
C4' |
H4' |
H4'A |
117.9 |
120.1 |
| O5' |
C4' |
H4' |
H4'A |
242.0 |
240.1 |
| H4'A |
C4' |
C2' |
H2' |
10.7 |
55.0 |
| C2' |
C4' |
H4'A |
H4' |
242.1 |
239.9 |
| O5' |
C4' |
H4'A |
H4' |
117.9 |
119.9 |
| O5' |
C4' |
C2' |
H2' |
130.7 |
175.0 |
| C2' |
C4' |
O5' |
H4' |
120.0 |
120.1 |
| C2' |
C4' |
O5' |
H4'A |
240.0 |
240.0 |
| H4' |
C4' |
O5' |
H4'A |
120.0 |
119.9 |
| HO5' |
O5' |
C4' |
H4' |
60.0 |
59.9 |
| HO5' |
O5' |
C4' |
H4'A |
300.0 |
300.0 |
| HO6' |
O6' |
C3' |
H3' |
60.0 |
60.0 |
| HO6' |
O6' |
C3' |
H3'A |
300.0 |
300.0 |
| H14 |
N7 |
C8 |
C9 |
186.5 |
180.0 |
| H14 |
N7 |
C8 |
H8 |
6.5 |
0.0 |