PDB Chemical Component 21Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 21Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C14 |
O13 |
1.373 |
1.430 |
| O13 |
C12 |
1.380 |
1.360 |
| C11 |
C12 |
1.414 |
1.385 |
| C11 |
C09 |
1.423 |
1.385 |
| C12 |
C05 |
1.367 |
1.393 |
| CL2 |
C09 |
1.693 |
1.736 |
| C09 |
C07 |
1.375 |
1.385 |
| C05 |
N04 |
1.461 |
1.401 |
| C05 |
C06 |
1.437 |
1.387 |
| N04 |
C03 |
1.458 |
1.465 |
| C07 |
C06 |
1.396 |
1.383 |
| C07 |
CL1 |
1.729 |
1.735 |
| C03 |
C02 |
1.537 |
1.506 |
| O01 |
C02 |
1.234 |
1.213 |
| C02 |
N15 |
1.448 |
1.348 |
| N15 |
C24 |
1.441 |
1.470 |
| N15 |
C16 |
1.438 |
1.470 |
| C24 |
C23 |
1.493 |
1.533 |
| C16 |
C17 |
1.482 |
1.534 |
| C23 |
N18 |
1.437 |
1.470 |
| C17 |
N18 |
1.442 |
1.470 |
| N18 |
C19 |
1.481 |
1.348 |
| C19 |
O22 |
1.227 |
1.212 |
| C19 |
C20 |
1.564 |
1.507 |
| C21 |
C20 |
1.480 |
1.531 |
| C17 |
H171 |
1.100 |
1.091 |
| C17 |
H172 |
1.100 |
1.090 |
| C20 |
H201 |
1.100 |
1.090 |
| C20 |
H202 |
1.100 |
1.090 |
| C21 |
H213 |
1.100 |
1.090 |
| C21 |
H212 |
1.100 |
1.090 |
| C21 |
H1 |
1.100 |
1.090 |
| C24 |
H241 |
1.100 |
1.090 |
| C24 |
H242 |
1.099 |
1.090 |
| C03 |
H031 |
1.101 |
1.090 |
| C03 |
H032 |
1.100 |
1.090 |
| N04 |
H041 |
1.000 |
0.970 |
| C06 |
H061 |
1.080 |
1.080 |
| C11 |
H111 |
1.080 |
1.080 |
| C14 |
H143 |
1.100 |
1.090 |
| C14 |
H141 |
1.100 |
1.090 |
| C14 |
H142 |
1.100 |
1.090 |
| C16 |
H162 |
1.100 |
1.090 |
| C16 |
H161 |
1.100 |
1.090 |
| C23 |
H232 |
1.100 |
1.090 |
| C23 |
H231 |
1.100 |
1.090 |
Bond Angles for 21Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
C11 |
H111 |
119.9 |
120.0 |
| C05 |
N04 |
H041 |
106.7 |
120.0 |
| C05 |
C06 |
H061 |
119.9 |
120.0 |
| N04 |
C03 |
H031 |
107.5 |
109.5 |
| N04 |
C03 |
H032 |
107.5 |
109.5 |
| C07 |
C06 |
H061 |
119.9 |
120.0 |
| C03 |
C02 |
N15 |
123.3 |
120.0 |
| O01 |
C02 |
N15 |
119.3 |
120.0 |
| C02 |
N15 |
C16 |
122.0 |
120.6 |
| N15 |
C24 |
C23 |
113.0 |
108.7 |
| N15 |
C24 |
H241 |
108.6 |
109.6 |
| N15 |
C24 |
H242 |
108.6 |
109.7 |
| N15 |
C16 |
H162 |
108.7 |
109.6 |
| N15 |
C16 |
H161 |
108.7 |
109.6 |
| C24 |
C23 |
N18 |
112.7 |
108.7 |
| C23 |
C24 |
H241 |
108.6 |
109.6 |
| C23 |
C24 |
H242 |
108.6 |
109.6 |
| C24 |
C23 |
H232 |
108.6 |
109.6 |
| C24 |
C23 |
H231 |
108.7 |
109.6 |
| C16 |
C17 |
N18 |
112.1 |
108.6 |
| C16 |
C17 |
H171 |
108.8 |
109.6 |
| C16 |
C17 |
H172 |
108.8 |
109.8 |
| C17 |
N18 |
C19 |
121.7 |
120.6 |
| N18 |
C17 |
H171 |
108.8 |
109.6 |
| N18 |
C17 |
H172 |
108.8 |
109.6 |
| N18 |
C19 |
O22 |
119.2 |
120.0 |
| C19 |
C20 |
H201 |
106.8 |
109.5 |
| C19 |
C20 |
H202 |
106.8 |
109.5 |
| C21 |
C20 |
H201 |
106.8 |
109.5 |
| C21 |
C20 |
H202 |
106.8 |
109.4 |
| H171 |
C17 |
H172 |
109.5 |
109.5 |
| H201 |
C20 |
H202 |
109.4 |
109.5 |
| H213 |
C21 |
H212 |
109.5 |
109.5 |
| H213 |
C21 |
H1 |
109.5 |
109.5 |
| H212 |
C21 |
H1 |
109.5 |
109.5 |
| H241 |
C24 |
H242 |
109.5 |
109.7 |
| H031 |
C03 |
H032 |
109.5 |
109.4 |
| H143 |
C14 |
H141 |
109.5 |
109.5 |
| H143 |
C14 |
H142 |
109.5 |
109.5 |
| H141 |
C14 |
H142 |
109.5 |
109.5 |
| H162 |
C16 |
H161 |
109.5 |
109.7 |
| H232 |
C23 |
H231 |
109.5 |
109.8 |
Torsion Angles for 21Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O13 |
C12 |
C11 |
H111 |
0.4 |
359.6 |
| C12 |
C05 |
N04 |
H041 |
322.6 |
359.7 |
| C12 |
C05 |
C06 |
H061 |
180.0 |
180.3 |
| C09 |
C07 |
C06 |
H061 |
179.7 |
180.0 |
| C05 |
N04 |
C03 |
H031 |
168.9 |
60.0 |
| C05 |
N04 |
C03 |
H032 |
286.7 |
300.0 |
| C06 |
C05 |
N04 |
H041 |
142.7 |
180.0 |
| C07 |
C06 |
C05 |
H061 |
180.0 |
180.0 |
| N04 |
C03 |
C02 |
N15 |
213.8 |
180.0 |
| H031 |
C03 |
N04 |
H032 |
242.2 |
120.0 |
| C05 |
C06 |
C07 |
H061 |
180.0 |
180.0 |
| CL1 |
C07 |
C06 |
H061 |
359.6 |
0.0 |
| O01 |
C02 |
C03 |
N15 |
179.4 |
180.0 |
| C03 |
C02 |
N15 |
C16 |
179.4 |
360.0 |
| C03 |
C02 |
O01 |
N15 |
180.6 |
180.0 |
| O01 |
C02 |
N15 |
C16 |
0.0 |
180.0 |
| C02 |
N15 |
C24 |
C23 |
230.4 |
235.2 |
| C02 |
N15 |
C24 |
H241 |
350.9 |
355.0 |
| C02 |
N15 |
C24 |
H242 |
109.9 |
115.4 |
| C02 |
N15 |
C16 |
H162 |
248.2 |
5.0 |
| C02 |
N15 |
C16 |
H161 |
7.2 |
244.6 |
| N15 |
C24 |
C23 |
N18 |
309.0 |
310.6 |
| C23 |
C24 |
N15 |
H241 |
239.5 |
240.2 |
| C23 |
C24 |
N15 |
H242 |
120.5 |
119.8 |
| N15 |
C24 |
C23 |
H232 |
69.5 |
70.3 |
| N15 |
C24 |
C23 |
H231 |
188.5 |
190.8 |
| H241 |
C24 |
N15 |
H242 |
241.1 |
239.6 |
| C16 |
N15 |
C24 |
C23 |
51.0 |
55.2 |
| C16 |
N15 |
C24 |
H241 |
171.5 |
175.0 |
| C16 |
N15 |
C24 |
H242 |
290.4 |
295.4 |
| N15 |
C16 |
C17 |
N18 |
54.4 |
49.5 |
| N15 |
C16 |
C17 |
H171 |
174.8 |
169.2 |
| N15 |
C16 |
C17 |
H172 |
294.1 |
289.6 |
| H162 |
C16 |
N15 |
H161 |
240.9 |
120.5 |
| N15 |
C24 |
C23 |
H241 |
120.5 |
119.7 |
| N15 |
C24 |
C23 |
H242 |
239.5 |
240.1 |
| H241 |
C24 |
C23 |
H242 |
118.9 |
120.4 |
| H232 |
C23 |
C24 |
H231 |
241.0 |
239.4 |
| C16 |
C17 |
N18 |
C19 |
126.8 |
124.8 |
| N18 |
C17 |
C16 |
H171 |
239.6 |
240.2 |
| N18 |
C17 |
C16 |
H172 |
120.4 |
119.9 |
| H171 |
C17 |
C16 |
H172 |
240.8 |
239.6 |
| N18 |
C23 |
C24 |
H241 |
188.5 |
190.9 |
| N18 |
C23 |
C24 |
H242 |
69.6 |
70.5 |
| C24 |
C23 |
N18 |
H232 |
120.5 |
119.7 |
| C24 |
C23 |
N18 |
H231 |
239.5 |
240.2 |
| C23 |
N18 |
C17 |
H171 |
186.2 |
185.0 |
| C23 |
N18 |
C17 |
H172 |
67.0 |
64.8 |
| C24 |
C23 |
N18 |
C17 |
51.6 |
55.2 |
| C16 |
C17 |
N18 |
H171 |
120.4 |
119.7 |
| C16 |
C17 |
N18 |
H172 |
239.6 |
240.0 |
| C17 |
N18 |
C19 |
O22 |
359.7 |
0.0 |
| H171 |
C17 |
N18 |
H172 |
119.2 |
120.3 |
| C24 |
C23 |
N18 |
C19 |
231.4 |
235.2 |
| C19 |
N18 |
C17 |
H171 |
6.4 |
5.0 |
| C19 |
N18 |
C17 |
H172 |
247.2 |
244.7 |
| N18 |
C19 |
C20 |
H201 |
76.6 |
60.0 |
| N18 |
C19 |
C20 |
H202 |
193.6 |
300.0 |
| O22 |
C19 |
C20 |
H201 |
256.3 |
240.0 |
| O22 |
C19 |
C20 |
H202 |
13.3 |
119.9 |
| C17 |
N18 |
C19 |
C20 |
179.5 |
180.0 |
| C21 |
C20 |
C19 |
H201 |
238.5 |
120.0 |
| C21 |
C20 |
C19 |
H202 |
121.5 |
240.1 |
| H201 |
C20 |
C19 |
H202 |
243.0 |
120.1 |
| C19 |
C20 |
C21 |
H201 |
121.5 |
240.0 |
| C19 |
C20 |
C21 |
H202 |
238.5 |
120.0 |
| H201 |
C20 |
C21 |
H202 |
117.0 |
240.0 |
| C16 |
C17 |
H171 |
N18 |
237.6 |
240.8 |
| C16 |
C17 |
H171 |
H172 |
118.8 |
120.5 |
| H171 |
C17 |
N18 |
C19 |
6.4 |
5.0 |
| N18 |
C17 |
H171 |
H172 |
241.2 |
239.7 |
| C16 |
C17 |
H172 |
N18 |
122.4 |
119.3 |
| C16 |
C17 |
H172 |
H171 |
241.2 |
239.6 |
| H172 |
C17 |
N18 |
C19 |
247.2 |
244.7 |
| N18 |
C17 |
H172 |
H171 |
118.8 |
120.3 |
| C19 |
C20 |
H201 |
H202 |
115.2 |
239.9 |
| C21 |
C20 |
H201 |
H202 |
244.8 |
120.0 |
| C19 |
C20 |
H202 |
H201 |
244.8 |
120.1 |
| C21 |
C20 |
H202 |
H201 |
115.2 |
240.0 |
| H213 |
C21 |
C20 |
H201 |
58.5 |
180.0 |
| H213 |
C21 |
C20 |
H202 |
301.5 |
300.0 |
| H212 |
C21 |
H213 |
H1 |
120.0 |
120.1 |
| H212 |
C21 |
C20 |
H201 |
178.5 |
300.0 |
| H212 |
C21 |
C20 |
H202 |
61.5 |
60.0 |
| H213 |
C21 |
H212 |
H1 |
240.0 |
239.9 |
| H1 |
C21 |
C20 |
H201 |
298.5 |
60.0 |
| H1 |
C21 |
C20 |
H202 |
181.5 |
180.0 |
| H213 |
C21 |
H1 |
H212 |
120.0 |
120.1 |
| N15 |
C24 |
H241 |
C23 |
236.7 |
240.8 |
| N15 |
C24 |
H241 |
H242 |
118.4 |
120.5 |
| H241 |
C24 |
C23 |
N18 |
188.5 |
190.9 |
| C23 |
C24 |
H241 |
H242 |
241.6 |
239.6 |
| H241 |
C24 |
C23 |
H232 |
309.0 |
310.6 |
| H241 |
C24 |
C23 |
H231 |
68.0 |
71.1 |
| N15 |
C24 |
H242 |
C23 |
123.3 |
119.2 |
| N15 |
C24 |
H242 |
H241 |
241.6 |
239.6 |
| H242 |
C24 |
C23 |
N18 |
69.6 |
70.5 |
| C23 |
C24 |
H242 |
H241 |
118.4 |
120.4 |
| H242 |
C24 |
C23 |
H232 |
190.0 |
190.2 |
| H242 |
C24 |
C23 |
H231 |
309.1 |
310.7 |
| N04 |
C03 |
H031 |
H032 |
116.5 |
240.0 |
| H031 |
C03 |
C02 |
N15 |
92.7 |
300.0 |
| N04 |
C03 |
H032 |
H031 |
243.4 |
120.0 |
| H032 |
C03 |
C02 |
N15 |
334.9 |
60.0 |
| H041 |
N04 |
C03 |
H031 |
47.4 |
239.9 |
| H041 |
N04 |
C03 |
H032 |
165.2 |
120.0 |
| H141 |
C14 |
H143 |
H142 |
120.0 |
120.1 |
| H143 |
C14 |
H141 |
H142 |
240.0 |
239.9 |
| H143 |
C14 |
H142 |
H141 |
120.0 |
120.1 |
| N15 |
C16 |
H162 |
H161 |
118.6 |
239.6 |
| H162 |
C16 |
C17 |
N18 |
294.0 |
169.2 |
| H162 |
C16 |
C17 |
H171 |
54.4 |
288.9 |
| H162 |
C16 |
C17 |
H172 |
173.6 |
49.3 |
| N15 |
C16 |
H161 |
H162 |
241.4 |
120.4 |
| H161 |
C16 |
C17 |
N18 |
174.9 |
289.7 |
| H161 |
C16 |
C17 |
H171 |
295.3 |
49.4 |
| H161 |
C16 |
C17 |
H172 |
54.5 |
169.8 |
| C24 |
C23 |
H232 |
N18 |
237.0 |
240.9 |
| H232 |
C23 |
C24 |
H241 |
309.0 |
310.6 |
| H232 |
C23 |
C24 |
H242 |
190.0 |
190.2 |
| C24 |
C23 |
H232 |
H231 |
118.5 |
120.5 |
| C24 |
C23 |
H231 |
N18 |
123.0 |
119.2 |
| H231 |
C23 |
C24 |
H241 |
68.0 |
71.1 |
| H231 |
C23 |
C24 |
H242 |
309.1 |
310.7 |
| C24 |
C23 |
H231 |
H232 |
241.5 |
239.6 |