PDB Chemical Component 20Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 20Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3 |
C2 |
1.217 |
1.213 |
| C1 |
C2 |
1.509 |
1.507 |
| C2 |
N4 |
1.357 |
1.347 |
| N20 |
C19 |
1.422 |
1.399 |
| C10 |
C9 |
1.392 |
1.376 |
| C10 |
C5 |
1.405 |
1.392 |
| N4 |
C5 |
1.412 |
1.394 |
| C9 |
C8 |
1.407 |
1.398 |
| C5 |
C6 |
1.392 |
1.392 |
| O12 |
C11 |
1.226 |
1.216 |
| C8 |
C11 |
1.489 |
1.476 |
| C8 |
C7 |
1.409 |
1.398 |
| C6 |
C7 |
1.391 |
1.377 |
| C11 |
N13 |
1.347 |
1.347 |
| C19 |
C18 |
1.401 |
1.387 |
| C19 |
C14 |
1.418 |
1.396 |
| C18 |
C17 |
1.391 |
1.380 |
| N13 |
C14 |
1.402 |
1.401 |
| C14 |
C15 |
1.398 |
1.384 |
| C17 |
C16 |
1.405 |
1.395 |
| C15 |
C16 |
1.406 |
1.396 |
| C16 |
C21 |
1.481 |
1.479 |
| C21 |
C22 |
1.349 |
1.347 |
| C21 |
S25 |
1.757 |
1.759 |
| C22 |
C23 |
1.386 |
1.380 |
| S25 |
C24 |
1.760 |
1.759 |
| C23 |
C24 |
1.333 |
1.336 |
| C6 |
H1 |
1.080 |
1.080 |
| C7 |
H2 |
1.080 |
1.080 |
| C9 |
H3 |
1.080 |
1.080 |
| C10 |
H4 |
1.080 |
1.080 |
| C1 |
H5 |
1.100 |
1.090 |
| C1 |
H6 |
1.100 |
1.090 |
| C1 |
H7 |
1.100 |
1.091 |
| N4 |
H8 |
1.000 |
0.970 |
| N13 |
H9 |
1.000 |
0.970 |
| C15 |
H10 |
1.080 |
1.079 |
| C17 |
H11 |
1.080 |
1.080 |
| C18 |
H12 |
1.080 |
1.080 |
| N20 |
H13 |
1.000 |
0.970 |
| N20 |
H14 |
1.000 |
0.970 |
| C22 |
H15 |
1.079 |
1.080 |
| C23 |
H16 |
1.080 |
1.080 |
| C24 |
H17 |
1.080 |
1.079 |
Bond Angles for 20Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3 |
C2 |
N4 |
122.7 |
120.0 |
| C1 |
C2 |
N4 |
118.3 |
120.0 |
| C2 |
C1 |
H5 |
109.5 |
109.4 |
| C2 |
C1 |
H6 |
109.5 |
109.5 |
| C2 |
C1 |
H7 |
109.5 |
109.4 |
| C2 |
N4 |
H8 |
117.8 |
120.0 |
| C10 |
C9 |
H3 |
120.3 |
120.1 |
| C5 |
C6 |
C7 |
119.9 |
120.1 |
| C5 |
C6 |
H1 |
120.0 |
119.9 |
| O12 |
C11 |
N13 |
120.2 |
120.0 |
| C8 |
C11 |
N13 |
117.1 |
120.0 |
| C8 |
C7 |
H2 |
119.9 |
120.1 |
| C7 |
C6 |
H1 |
120.1 |
120.0 |
| C6 |
C7 |
H2 |
119.8 |
120.0 |
| C11 |
N13 |
H9 |
117.2 |
120.0 |
| C19 |
C18 |
H12 |
119.6 |
119.9 |
| C18 |
C17 |
H11 |
119.4 |
120.0 |
| N13 |
C14 |
C15 |
117.5 |
120.0 |
| C14 |
C15 |
C16 |
120.3 |
119.8 |
| C14 |
C15 |
H10 |
119.8 |
120.1 |
| C17 |
C16 |
C21 |
122.0 |
120.0 |
| C15 |
C16 |
C21 |
119.2 |
120.1 |
| C16 |
C15 |
H10 |
119.8 |
120.1 |
| C16 |
C21 |
C22 |
126.7 |
125.3 |
| C16 |
C21 |
S25 |
124.2 |
125.2 |
| C22 |
C21 |
S25 |
108.8 |
109.5 |
| C21 |
C22 |
C23 |
114.6 |
114.7 |
| C21 |
C22 |
H15 |
122.7 |
122.6 |
| C21 |
S25 |
C24 |
92.0 |
91.0 |
| C22 |
C23 |
C24 |
115.8 |
115.1 |
| C23 |
C22 |
H15 |
122.7 |
122.7 |
| C22 |
C23 |
H16 |
122.1 |
122.5 |
| S25 |
C24 |
H17 |
125.6 |
125.1 |
| C24 |
C23 |
H16 |
122.1 |
122.4 |
| C23 |
C24 |
H17 |
125.6 |
125.2 |
| H5 |
C1 |
H6 |
109.4 |
109.5 |
| H5 |
C1 |
H7 |
109.5 |
109.5 |
| H6 |
C1 |
H7 |
109.5 |
109.5 |
| H13 |
N20 |
H14 |
109.4 |
120.0 |
Torsion Angles for 20Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
O3 |
N4 |
180.2 |
179.9 |
| O3 |
C2 |
C1 |
H5 |
0.0 |
270.0 |
| O3 |
C2 |
C1 |
H6 |
120.0 |
30.0 |
| O3 |
C2 |
C1 |
H7 |
240.0 |
150.1 |
| O3 |
C2 |
N4 |
H8 |
180.9 |
174.7 |
| O3 |
C2 |
C1 |
N4 |
179.8 |
180.1 |
| C1 |
C2 |
N4 |
H8 |
0.7 |
354.8 |
| H5 |
C1 |
C2 |
H6 |
240.0 |
240.0 |
| H5 |
C1 |
C2 |
H7 |
120.0 |
119.9 |
| H6 |
C1 |
C2 |
H7 |
240.0 |
240.0 |
| N4 |
C2 |
C1 |
H5 |
180.2 |
89.9 |
| N4 |
C2 |
C1 |
H6 |
300.2 |
210.0 |
| N4 |
C2 |
C1 |
H7 |
60.2 |
330.0 |
| N20 |
C19 |
C18 |
H12 |
0.4 |
359.7 |
| C10 |
C5 |
C6 |
H1 |
184.4 |
180.0 |
| N4 |
C5 |
C6 |
H1 |
1.9 |
359.7 |
| C9 |
C8 |
C11 |
N13 |
205.1 |
360.0 |
| C9 |
C8 |
C7 |
H2 |
181.0 |
180.1 |
| C7 |
C6 |
C5 |
H1 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H2 |
176.8 |
179.9 |
| C8 |
C11 |
O12 |
N13 |
184.1 |
180.0 |
| O12 |
C11 |
N13 |
H9 |
184.7 |
185.3 |
| O12 |
C11 |
C8 |
N13 |
176.0 |
180.0 |
| C8 |
C11 |
N13 |
H9 |
0.8 |
5.3 |
| C7 |
C8 |
C11 |
N13 |
23.2 |
180.0 |
| C8 |
C7 |
C6 |
H1 |
176.8 |
180.0 |
| C6 |
C7 |
C8 |
H2 |
180.0 |
179.9 |
| C5 |
C6 |
C7 |
H1 |
180.0 |
180.0 |
| C8 |
C7 |
C6 |
H2 |
180.0 |
180.1 |
| C11 |
N13 |
C14 |
C15 |
232.6 |
22.3 |
| C19 |
C18 |
C17 |
H11 |
178.1 |
179.7 |
| C19 |
C14 |
C15 |
H10 |
178.8 |
180.2 |
| C18 |
C17 |
C16 |
C21 |
176.7 |
180.0 |
| N13 |
C14 |
C15 |
C16 |
185.4 |
180.0 |
| N13 |
C14 |
C15 |
H10 |
5.4 |
360.0 |
| C14 |
C15 |
C16 |
C21 |
184.7 |
180.0 |
| C16 |
C15 |
C14 |
H10 |
180.0 |
180.1 |
| C15 |
C16 |
C17 |
C21 |
184.8 |
180.0 |
| C17 |
C16 |
C15 |
H10 |
180.0 |
180.0 |
| C17 |
C16 |
C21 |
C22 |
330.8 |
360.0 |
| C17 |
C16 |
C21 |
S25 |
158.4 |
179.7 |
| C14 |
C15 |
C16 |
H10 |
180.0 |
179.9 |
| C17 |
C16 |
C15 |
C21 |
175.3 |
180.0 |
| C15 |
C16 |
C21 |
C22 |
146.0 |
180.0 |
| C15 |
C16 |
C21 |
S25 |
333.6 |
359.7 |
| C21 |
C16 |
C15 |
H10 |
4.7 |
0.1 |
| C22 |
C21 |
C16 |
S25 |
172.4 |
180.3 |
| C16 |
C21 |
C22 |
C23 |
184.0 |
180.0 |
| C16 |
C21 |
C22 |
H15 |
4.0 |
359.9 |
| C16 |
C21 |
S25 |
C24 |
175.8 |
179.9 |
| C16 |
C21 |
C22 |
S25 |
186.6 |
179.8 |
| C22 |
C21 |
S25 |
C24 |
2.2 |
359.7 |
| C21 |
C22 |
C23 |
C24 |
1.8 |
0.0 |
| C23 |
C22 |
C21 |
H15 |
180.0 |
180.1 |
| C21 |
C22 |
C23 |
H16 |
181.8 |
180.0 |
| C16 |
C21 |
S25 |
C22 |
173.6 |
180.2 |
| S25 |
C21 |
C22 |
C23 |
357.4 |
0.2 |
| S25 |
C21 |
C22 |
H15 |
177.4 |
180.2 |
| C21 |
S25 |
C24 |
H17 |
178.8 |
180.0 |
| C23 |
C22 |
C21 |
S25 |
357.4 |
0.2 |
| C21 |
C22 |
C23 |
H15 |
180.0 |
179.9 |
| C24 |
C23 |
C22 |
H16 |
180.0 |
180.0 |
| C22 |
C23 |
C24 |
H17 |
180.0 |
180.0 |
| S25 |
C24 |
C23 |
H16 |
180.1 |
179.8 |
| C23 |
C24 |
S25 |
H17 |
180.0 |
180.3 |
| C21 |
S25 |
C24 |
C23 |
358.7 |
0.3 |
| C24 |
C23 |
C22 |
H15 |
181.8 |
180.1 |
| C22 |
C23 |
C24 |
H16 |
180.0 |
180.0 |
| S25 |
C24 |
C23 |
H17 |
180.0 |
179.7 |
| C5 |
C6 |
H1 |
C7 |
180.0 |
180.0 |
| H1 |
C6 |
C7 |
H2 |
356.8 |
359.9 |
| H2 |
C7 |
C6 |
H1 |
356.8 |
359.9 |
| H4 |
C10 |
C9 |
H3 |
1.2 |
359.9 |
| H5 |
C1 |
C2 |
N4 |
180.2 |
89.9 |
| C2 |
C1 |
H5 |
H6 |
120.0 |
120.1 |
| C2 |
C1 |
H5 |
H7 |
240.0 |
240.1 |
| H6 |
C1 |
H5 |
H7 |
120.0 |
120.0 |
| H6 |
C1 |
C2 |
N4 |
300.2 |
210.0 |
| C2 |
C1 |
H6 |
H5 |
240.0 |
240.0 |
| C2 |
C1 |
H6 |
H7 |
120.0 |
120.0 |
| H5 |
C1 |
H6 |
H7 |
240.0 |
240.0 |
| H7 |
C1 |
C2 |
N4 |
60.2 |
330.0 |
| C2 |
C1 |
H7 |
H5 |
120.0 |
119.9 |
| C2 |
C1 |
H7 |
H6 |
240.0 |
240.0 |
| H5 |
C1 |
H7 |
H6 |
120.0 |
120.0 |
| H9 |
N13 |
C14 |
C15 |
52.7 |
202.3 |
| C14 |
C15 |
H10 |
C16 |
180.0 |
180.1 |
| H10 |
C15 |
C16 |
C21 |
4.7 |
0.1 |
| H11 |
C17 |
C16 |
C21 |
356.7 |
0.0 |
| H12 |
C18 |
C17 |
H11 |
358.1 |
360.0 |
| H15 |
C22 |
C21 |
S25 |
177.4 |
180.2 |
| C21 |
C22 |
H15 |
C23 |
180.0 |
180.1 |
| H15 |
C22 |
C23 |
C24 |
181.8 |
180.1 |
| H15 |
C22 |
C23 |
H16 |
1.7 |
0.1 |
| C22 |
C23 |
H16 |
C24 |
180.0 |
180.0 |
| H16 |
C23 |
C22 |
H15 |
1.7 |
0.1 |
| H16 |
C23 |
C24 |
H17 |
0.0 |
0.0 |
| H17 |
C24 |
C23 |
H16 |
0.0 |
0.0 |