PDB Chemical Component 20K
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 20K
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
S |
1.737 |
1.710 |
| S |
C5 |
1.742 |
1.762 |
| C16 |
CL |
1.727 |
1.736 |
| C1 |
C2 |
1.492 |
1.507 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| N1 |
C2 |
1.303 |
1.292 |
| N1 |
C3 |
1.385 |
1.312 |
| C8 |
N2 |
1.341 |
1.324 |
| C9 |
N2 |
1.337 |
1.326 |
| C3 |
C4 |
1.492 |
1.506 |
| C3 |
C5 |
1.398 |
1.353 |
| C9 |
N3 |
1.350 |
1.385 |
| C10 |
N3 |
1.407 |
1.401 |
| N3 |
HN3 |
1.000 |
0.970 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| C4 |
H4B |
1.100 |
1.090 |
| C14 |
N4 |
1.491 |
1.469 |
| C15 |
N4 |
1.492 |
1.468 |
| N4 |
C13 |
1.486 |
1.401 |
| C5 |
C6 |
1.475 |
1.477 |
| C6 |
N5 |
1.342 |
1.334 |
| N5 |
C9 |
1.356 |
1.323 |
| C6 |
C7 |
1.388 |
1.400 |
| C7 |
C8 |
1.383 |
1.382 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
H8 |
1.080 |
1.080 |
| C11 |
C10 |
1.390 |
1.388 |
| C10 |
C17 |
1.388 |
1.390 |
| C11 |
C12 |
1.384 |
1.381 |
| C11 |
H11 |
1.080 |
1.081 |
| C12 |
C13 |
1.386 |
1.388 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
C16 |
1.376 |
1.391 |
| C14 |
H14 |
1.100 |
1.089 |
| C14 |
H14A |
1.100 |
1.090 |
| C14 |
H14B |
1.100 |
1.090 |
| C15 |
H15 |
1.099 |
1.090 |
| C15 |
H15A |
1.100 |
1.090 |
| C15 |
H15B |
1.100 |
1.090 |
| C17 |
C16 |
1.377 |
1.380 |
| C17 |
H17 |
1.080 |
1.080 |
Bond Angles for 20K
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S |
C5 |
89.4 |
90.3 |
| S |
C5 |
C3 |
109.7 |
107.8 |
| S |
C5 |
C6 |
116.0 |
126.1 |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.4 |
109.5 |
| C1 |
C2 |
N1 |
124.3 |
124.8 |
| H1 |
C1 |
H1A |
109.4 |
109.5 |
| H1 |
C1 |
H1B |
109.4 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.4 |
| C2 |
N1 |
C3 |
112.6 |
117.4 |
| N1 |
C3 |
C4 |
119.1 |
122.9 |
| N1 |
C3 |
C5 |
113.6 |
114.2 |
| C4 |
C3 |
C5 |
127.2 |
122.9 |
| C3 |
C4 |
H4 |
109.5 |
109.5 |
| C3 |
C4 |
H4A |
109.5 |
109.5 |
| C3 |
C4 |
H4B |
109.5 |
109.5 |
| C3 |
C5 |
C6 |
134.0 |
126.1 |
| C9 |
N3 |
HN3 |
113.9 |
120.0 |
| C10 |
N3 |
HN3 |
113.8 |
120.0 |
| H4 |
C4 |
H4A |
109.4 |
109.4 |
| H4 |
C4 |
H4B |
109.5 |
109.5 |
| H4A |
C4 |
H4B |
109.5 |
109.4 |
| N4 |
C13 |
C12 |
119.8 |
120.0 |
| N4 |
C13 |
C16 |
121.3 |
120.0 |
| C5 |
C6 |
N5 |
113.6 |
120.5 |
| C5 |
C6 |
C7 |
123.7 |
120.5 |
| C6 |
N5 |
C9 |
116.5 |
120.5 |
| C6 |
C7 |
C8 |
115.4 |
118.4 |
| C6 |
C7 |
H7 |
122.3 |
120.8 |
| C8 |
C7 |
H7 |
122.3 |
120.8 |
| C7 |
C8 |
H8 |
117.9 |
120.4 |
| C11 |
C10 |
C17 |
119.1 |
119.9 |
| C10 |
C17 |
C16 |
119.4 |
120.0 |
| C10 |
C17 |
H17 |
120.3 |
119.9 |
| C12 |
C11 |
H11 |
119.7 |
120.0 |
| C11 |
C12 |
C13 |
120.2 |
120.0 |
| C11 |
C12 |
H12 |
119.9 |
120.0 |
| C13 |
C12 |
H12 |
119.9 |
120.0 |
| C12 |
C13 |
C16 |
118.7 |
120.0 |
| H14 |
C14 |
H14A |
109.4 |
109.5 |
| H14 |
C14 |
H14B |
109.5 |
109.5 |
| H14A |
C14 |
H14B |
109.5 |
109.5 |
| H15 |
C15 |
H15A |
109.5 |
109.5 |
| H15 |
C15 |
H15B |
109.5 |
109.4 |
| H15A |
C15 |
H15B |
109.5 |
109.5 |
Torsion Angles for 20K
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S |
C5 |
C3 |
358.9 |
0.0 |
| C2 |
S |
C5 |
C6 |
174.0 |
179.9 |
| N1 |
C3 |
C5 |
S |
1.8 |
360.0 |
| C4 |
C3 |
C5 |
S |
185.3 |
179.9 |
| C3 |
C5 |
S |
C6 |
184.9 |
180.1 |
| S |
C5 |
C6 |
N5 |
14.2 |
180.1 |
| S |
C5 |
C6 |
C7 |
195.8 |
0.1 |
| C1 |
C2 |
S |
C5 |
178.4 |
180.0 |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| C1 |
C2 |
N1 |
C3 |
182.6 |
180.0 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
N1 |
178.0 |
90.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
N1 |
298.0 |
210.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
N1 |
58.0 |
330.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| N1 |
C2 |
S |
C5 |
0.2 |
360.0 |
| N1 |
C2 |
C1 |
H1 |
178.0 |
90.0 |
| N1 |
C2 |
C1 |
H1A |
298.0 |
210.0 |
| N1 |
C2 |
C1 |
H1B |
58.0 |
330.0 |
| C2 |
N1 |
C3 |
C4 |
175.1 |
180.0 |
| C2 |
N1 |
C3 |
C5 |
358.4 |
0.0 |
| S |
C5 |
C3 |
N1 |
1.8 |
360.0 |
| C4 |
C3 |
N1 |
C5 |
176.8 |
180.0 |
| N1 |
C3 |
C4 |
H4 |
0.0 |
90.0 |
| N1 |
C3 |
C4 |
H4A |
120.0 |
210.0 |
| N1 |
C3 |
C4 |
H4B |
240.0 |
329.9 |
| N1 |
C3 |
C5 |
C6 |
187.9 |
180.1 |
| S |
C5 |
C3 |
C4 |
185.3 |
179.9 |
| N1 |
C3 |
C4 |
C5 |
183.7 |
180.0 |
| C4 |
C3 |
C5 |
C6 |
11.4 |
0.1 |
| H4 |
C4 |
C3 |
H4A |
240.0 |
240.0 |
| H4 |
C4 |
C3 |
H4B |
120.0 |
120.0 |
| H4A |
C4 |
C3 |
H4B |
240.0 |
240.0 |
| S |
C5 |
C3 |
C6 |
173.9 |
179.9 |
| N1 |
C3 |
C5 |
C4 |
176.4 |
180.0 |
| C5 |
C3 |
C4 |
H4 |
176.3 |
270.0 |
| C5 |
C3 |
C4 |
H4A |
296.2 |
30.0 |
| C5 |
C3 |
C4 |
H4B |
56.3 |
150.0 |
| C3 |
C5 |
C6 |
N5 |
187.8 |
359.9 |
| C3 |
C5 |
C6 |
C7 |
9.4 |
180.0 |
| C10 |
N3 |
C9 |
HN3 |
180.0 |
180.1 |
| C9 |
N3 |
C10 |
HN3 |
180.0 |
179.9 |
| H4 |
C4 |
C3 |
C5 |
176.3 |
270.0 |
| C3 |
C4 |
H4 |
H4A |
120.0 |
120.0 |
| C3 |
C4 |
H4 |
H4B |
240.0 |
240.0 |
| H4A |
C4 |
H4 |
H4B |
120.0 |
119.9 |
| H4A |
C4 |
C3 |
C5 |
296.2 |
30.0 |
| C3 |
C4 |
H4A |
H4 |
240.0 |
240.0 |
| C3 |
C4 |
H4A |
H4B |
120.0 |
120.0 |
| H4 |
C4 |
H4A |
H4B |
240.0 |
240.0 |
| H4B |
C4 |
C3 |
C5 |
56.3 |
150.0 |
| C3 |
C4 |
H4B |
H4 |
120.0 |
120.0 |
| C3 |
C4 |
H4B |
H4A |
240.0 |
240.0 |
| H4 |
C4 |
H4B |
H4A |
120.0 |
119.9 |
| C14 |
N4 |
C13 |
C16 |
199.5 |
120.0 |
| C15 |
N4 |
C13 |
C16 |
72.0 |
244.0 |
| C11 |
C12 |
C13 |
N4 |
175.7 |
180.0 |
| N4 |
C13 |
C12 |
H12 |
355.7 |
0.1 |
| C12 |
C13 |
N4 |
C16 |
184.8 |
179.9 |
| S |
C5 |
C6 |
C3 |
186.4 |
180.1 |
| C5 |
C6 |
N5 |
C9 |
182.4 |
180.1 |
| C5 |
C6 |
C7 |
C8 |
177.3 |
179.9 |
| C5 |
C6 |
C7 |
H7 |
357.3 |
359.9 |
| C5 |
C6 |
N5 |
C7 |
181.6 |
180.1 |
| N5 |
C9 |
N3 |
HN3 |
172.9 |
5.5 |
| C5 |
C6 |
C7 |
N5 |
178.3 |
179.9 |
| C7 |
C6 |
N5 |
C9 |
0.8 |
0.0 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
H8 |
181.5 |
180.0 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
H8 |
1.5 |
360.0 |
| H8 |
C8 |
C7 |
H7 |
1.5 |
360.0 |
| C11 |
C10 |
N3 |
HN3 |
168.1 |
219.2 |
| C11 |
C10 |
C17 |
C16 |
2.6 |
359.4 |
| C11 |
C10 |
C17 |
H17 |
182.6 |
179.7 |
| C17 |
C10 |
N3 |
HN3 |
345.9 |
38.9 |
| N4 |
C13 |
C12 |
C11 |
175.7 |
180.0 |
| C12 |
C11 |
C10 |
C17 |
359.1 |
0.3 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
C16 |
0.3 |
359.9 |
| H11 |
C11 |
C10 |
C17 |
179.1 |
180.2 |
| H11 |
C11 |
C12 |
C13 |
179.5 |
180.1 |
| H11 |
C11 |
C12 |
H12 |
359.5 |
360.0 |
| N4 |
C13 |
C12 |
C16 |
175.4 |
180.1 |
| C13 |
C12 |
C11 |
H11 |
179.5 |
180.1 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
179.9 |
| H12 |
C12 |
C11 |
H11 |
359.5 |
360.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.1 |
| H12 |
C12 |
C13 |
C16 |
180.3 |
180.1 |
| N4 |
C13 |
C16 |
C12 |
184.7 |
179.9 |
| C10 |
C17 |
C16 |
C13 |
357.2 |
0.5 |
| C16 |
C13 |
C12 |
H12 |
180.3 |
180.1 |
| H14A |
C14 |
H14 |
H14B |
120.0 |
120.0 |
| H14 |
C14 |
H14A |
H14B |
240.0 |
240.0 |
| H14 |
C14 |
H14B |
H14A |
120.0 |
120.0 |
| H15A |
C15 |
H15 |
H15B |
120.0 |
120.0 |
| H15 |
C15 |
H15A |
H15B |
240.0 |
240.1 |
| H15 |
C15 |
H15B |
H15A |
120.0 |
120.0 |
| C10 |
C17 |
C16 |
H17 |
180.0 |
180.3 |
| C10 |
C17 |
H17 |
C16 |
180.0 |
179.7 |