Atom Nomenclature for 208

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 208

Atom Name (V3) Atom Name (V2)
C30 C30
C28 C28
O25 O25
C15 C15
C13 C13
O22 O22
O20 O20
C19 C19
C18 C18
C21 C21
C17 C17
C11 C11
C12 C12
C10 C10
C8 C8
C14 C14
N4 N4
C9 C9
C3 C3
C7 C7
C26 C26
O5 O5
N2 N2
C1 C1
C6 C6
C16 C16
CL23 CL23
C27 C27
C31 C31
C29 C29
C24 C24
H301 1H30
H302 2H30
H303 3H30
H281 1H28
H282 2H28
H15 H15
HO22 HO22
H191 1H19
H192 2H19
H21 H21
H17 H17
H12 H12
H10 H10
H14 H14
H91 1H9
H92 2H9
H261 1H26
H262 2H26
H263 3H26
H27 H27
H31 H31
H29 H29
H24 H24