Atom Nomenclature for 1ZV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1ZV

Atom Name (V3) Atom Name (V2)
N N1
CA C1
C C2
O O1
CB C3
CG C4
C1 C5
C2 C6
C6 C7
C3 C8
C5 C9
C4 C10
N1 N2
CA1 C11
C7 C12
O1 O3
CB1 C13
CG1 C14
CD C15
N2 N3
CA2 C16
C8 C17
O2 O5
CB2 C18
CG2 C19
CD1 C20
NE N4
CZ C21
NH1 N5
NH2 N6
C9 C22
O3 O7
N3 N7
C11 C23
C21 C24
C31 C25
C41 C26
C51 C27
C61 C28
C71 C29
C81 C30
O8 O8
H H1
HA H3
HB2 H5
HB3 H6
HG2 H7
HG3 H8
HC2 H9
H6 H10
H3 H11
H5 H12
H4 H13
HA1 H15
HB21 H16
HB31 H17
HG21 H18
HG31 H19
HD2 H20
HD3 H21
H1 H23
HA2 H25
HB22 H26
HB32 H27
HG22 H28
HG32 H29
HD21 H30
HD31 H31
HE H32
HH11 H33
HH12 H34
HH21 H35
HH22 H36
H11 H39
HO H41
HN H38
H111 H42
H12 H43
H21 H44
H22 H45
H31 H46
H32 H47
H41 H48
H42 H49
H51 H50
H52 H51
H61 H52
H62 H53
H71 H54
H72 H55
H81 H56
HO8 H58