Atom Nomenclature for 1Z7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1Z7

Atom Name (V3) Atom Name (V2)
CA C1
CB C2
CG1 C3
CG2 C4
C C5
O O1
N N1
CA1 C6
C1 C7
O1 O3
CB1 C8
CG11 C9
CG21 C10
N1 N2
CA2 C11
C2 C12
O2 O5
CB2 C13
CG12 C14
CG22 C15
CA3 C16
CB3 C17
CG C18
CD1 C19
CD2 C20
N2 N3
P P1
O11 O7
O21 O8
CA4 C21
CB4 C22
CG3 C23
CD11 C24
CD21 C25
CE1 C26
CE2 C27
CZ C28
C3 C29
CS C30
OP O9
OS O10
O3 O11
HA1 H1
HA2 H2
HB H3
HG11 H4
HG12 H5
HG13 H6
HG21 H7
HG22 H8
HG23 H9
H H11
HA H13
HB1 H14
HG14 H15
HG15 H16
HG16 H17
HG24 H18
HG25 H19
HG26 H20
H1 H22
HA3 H24
HB2 H25
HG17 H26
HG18 H27
HG19 H28
HG27 H29
HG28 H30
HG29 H31
HA4 H33
HB11 H34
HB21 H35
HG H36
HD11 H37
HD12 H38
HD13 H39
HD21 H40
HD22 H41
HD23 H42
HN1 H43
HO2 H46
HA5 H47
HB12 H48
HB22 H49
HD1 H50
HD2 H51
HE1 H52
HE2 H53
HZ H54
HS1 H55
HS2 H56
HS3 H57