PDB Chemical Component 1YU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1YU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C53 |
C48 |
1.566 |
1.531 |
| C49 |
C48 |
1.556 |
1.530 |
| C48 |
C41 |
1.568 |
1.507 |
| C48 |
C57 |
1.564 |
1.529 |
| C42 |
C41 |
1.424 |
1.382 |
| C42 |
C44 |
1.417 |
1.382 |
| C41 |
C39 |
1.421 |
1.383 |
| C44 |
C46 |
1.413 |
1.383 |
| C39 |
C38 |
1.414 |
1.382 |
| C46 |
C38 |
1.418 |
1.383 |
| C38 |
C35 |
1.544 |
1.507 |
| C35 |
N33 |
1.500 |
1.470 |
| N33 |
C23 |
1.490 |
1.468 |
| O61 |
C21 |
1.440 |
1.429 |
| C23 |
C25 |
1.559 |
1.531 |
| C23 |
C21 |
1.566 |
1.525 |
| C25 |
S28 |
1.794 |
1.818 |
| C21 |
C19 |
1.565 |
1.526 |
| F63 |
C10 |
1.330 |
1.351 |
| S28 |
O32 |
1.498 |
1.421 |
| S28 |
C29 |
1.785 |
1.817 |
| C19 |
C16 |
1.574 |
1.530 |
| C19 |
C29 |
1.566 |
1.532 |
| C11 |
C10 |
1.418 |
1.383 |
| C11 |
C13 |
1.421 |
1.383 |
| C10 |
C9 |
1.420 |
1.390 |
| C16 |
C13 |
1.539 |
1.506 |
| C13 |
C14 |
1.412 |
1.383 |
| C9 |
N64 |
1.353 |
1.401 |
| C9 |
C8 |
1.418 |
1.392 |
| C14 |
C8 |
1.417 |
1.385 |
| C8 |
O7 |
1.394 |
1.360 |
| F3 |
C2 |
1.356 |
1.400 |
| O7 |
C5 |
1.445 |
1.429 |
| C5 |
C2 |
1.553 |
1.531 |
| C5 |
C67 |
1.549 |
1.529 |
| C2 |
F1 |
1.357 |
1.398 |
| C2 |
F4 |
1.361 |
1.399 |
| F70 |
C67 |
1.359 |
1.398 |
| C67 |
F69 |
1.353 |
1.399 |
| C67 |
F68 |
1.358 |
1.399 |
| C5 |
H1 |
1.100 |
1.090 |
| C11 |
H2 |
1.080 |
1.080 |
| C14 |
H3 |
1.080 |
1.080 |
| C16 |
H4 |
1.100 |
1.090 |
| C16 |
H5 |
1.101 |
1.091 |
| C19 |
H6 |
1.101 |
1.090 |
| C21 |
H7 |
1.100 |
1.090 |
| C23 |
H8 |
1.100 |
1.090 |
| C25 |
H9 |
1.100 |
1.090 |
| C25 |
H10 |
1.100 |
1.090 |
| C29 |
H11 |
1.100 |
1.090 |
| C29 |
H12 |
1.100 |
1.090 |
| N33 |
H14 |
1.000 |
1.009 |
| C35 |
H16 |
1.100 |
1.089 |
| C35 |
H17 |
1.100 |
1.090 |
| C39 |
H18 |
1.080 |
1.080 |
| C42 |
H19 |
1.080 |
1.081 |
| C44 |
H20 |
1.080 |
1.080 |
| C46 |
H21 |
1.080 |
1.079 |
| C49 |
H22 |
1.100 |
1.091 |
| C49 |
H23 |
1.100 |
1.091 |
| C49 |
H24 |
1.100 |
1.089 |
| C53 |
H25 |
1.100 |
1.089 |
| C53 |
H26 |
1.100 |
1.090 |
| C53 |
H27 |
1.100 |
1.090 |
| C57 |
H28 |
1.100 |
1.090 |
| C57 |
H29 |
1.100 |
1.091 |
| C57 |
H30 |
1.100 |
1.090 |
| O61 |
H31 |
0.950 |
0.968 |
| N64 |
H32 |
1.000 |
0.970 |
| N64 |
H33 |
1.000 |
0.971 |
Bond Angles for 1YU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C53 |
C48 |
C57 |
106.4 |
109.5 |
| C49 |
C48 |
C57 |
108.2 |
109.5 |
| C48 |
C57 |
H28 |
109.5 |
109.5 |
| C48 |
C57 |
H29 |
109.5 |
109.5 |
| C48 |
C57 |
H30 |
109.5 |
109.5 |
| C42 |
C44 |
C46 |
119.9 |
120.0 |
| C44 |
C42 |
H19 |
118.8 |
120.0 |
| C42 |
C44 |
H20 |
120.1 |
120.0 |
| C41 |
C39 |
H18 |
118.6 |
120.0 |
| C46 |
C44 |
H20 |
120.1 |
120.0 |
| C44 |
C46 |
H21 |
120.3 |
120.0 |
| C38 |
C35 |
H16 |
109.4 |
109.5 |
| C38 |
C35 |
H17 |
109.4 |
109.5 |
| C35 |
N33 |
H14 |
106.4 |
111.0 |
| N33 |
C23 |
H8 |
105.8 |
109.4 |
| O61 |
C21 |
H7 |
109.6 |
109.2 |
| C23 |
C25 |
S28 |
109.0 |
108.9 |
| C25 |
C23 |
H8 |
105.1 |
109.3 |
| C23 |
C25 |
H9 |
109.6 |
109.6 |
| C23 |
C25 |
H10 |
109.6 |
109.6 |
| C23 |
C21 |
H7 |
108.0 |
109.3 |
| C25 |
S28 |
O32 |
106.7 |
109.5 |
| C25 |
S28 |
C29 |
98.5 |
102.2 |
| S28 |
C25 |
H9 |
109.6 |
109.6 |
| S28 |
C25 |
H10 |
109.6 |
109.6 |
| C21 |
C19 |
C29 |
110.1 |
109.9 |
| C21 |
C19 |
H6 |
106.7 |
109.4 |
| C29 |
S28 |
O32 |
106.7 |
109.5 |
| C19 |
C29 |
S28 |
110.2 |
108.8 |
| S28 |
C29 |
H11 |
109.3 |
109.6 |
| S28 |
C29 |
H12 |
109.3 |
109.6 |
| C19 |
C16 |
H4 |
108.8 |
109.5 |
| C19 |
C16 |
H5 |
108.8 |
109.5 |
| C29 |
C19 |
H6 |
106.7 |
109.4 |
| C19 |
C29 |
H11 |
109.3 |
109.6 |
| C19 |
C29 |
H12 |
109.3 |
109.6 |
| C11 |
C13 |
C14 |
119.9 |
120.2 |
| C13 |
C11 |
H2 |
120.1 |
119.9 |
| C10 |
C9 |
N64 |
120.5 |
120.1 |
| C13 |
C14 |
H3 |
119.8 |
119.9 |
| C9 |
N64 |
H32 |
109.5 |
120.0 |
| C9 |
N64 |
H33 |
109.4 |
120.0 |
| F3 |
C2 |
F4 |
108.5 |
109.5 |
| O7 |
C5 |
C67 |
105.9 |
109.5 |
| O7 |
C5 |
H1 |
108.9 |
109.5 |
| C5 |
C67 |
F69 |
110.3 |
109.5 |
| C5 |
C67 |
F68 |
110.8 |
109.5 |
| C67 |
C5 |
H1 |
107.6 |
109.5 |
| F68 |
C67 |
F69 |
110.0 |
109.4 |
| H4 |
C16 |
H5 |
109.5 |
109.5 |
| H9 |
C25 |
H10 |
109.5 |
109.6 |
| H11 |
C29 |
H12 |
109.5 |
109.7 |
| H16 |
C35 |
H17 |
109.5 |
109.5 |
| H22 |
C49 |
H23 |
109.5 |
109.4 |
| H22 |
C49 |
H24 |
109.4 |
109.5 |
| H23 |
C49 |
H24 |
109.5 |
109.5 |
| H25 |
C53 |
H26 |
109.5 |
109.5 |
| H25 |
C53 |
H27 |
109.4 |
109.5 |
| H26 |
C53 |
H27 |
109.5 |
109.4 |
| H28 |
C57 |
H29 |
109.5 |
109.4 |
| H28 |
C57 |
H30 |
109.4 |
109.5 |
| H29 |
C57 |
H30 |
109.5 |
109.4 |
| H32 |
N64 |
H33 |
109.5 |
120.0 |
Torsion Angles for 1YU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C49 |
C48 |
C53 |
C57 |
244.5 |
240.0 |
| C53 |
C48 |
C57 |
H28 |
180.0 |
180.0 |
| C53 |
C48 |
C57 |
H29 |
300.0 |
300.0 |
| C53 |
C48 |
C57 |
H30 |
60.0 |
60.0 |
| C53 |
C48 |
C49 |
C57 |
114.3 |
120.0 |
| C49 |
C48 |
C57 |
H28 |
294.7 |
300.0 |
| C49 |
C48 |
C57 |
H29 |
54.7 |
60.0 |
| C49 |
C48 |
C57 |
H30 |
174.7 |
180.0 |
| C48 |
C41 |
C39 |
H18 |
359.6 |
360.0 |
| H28 |
C57 |
C48 |
H29 |
240.0 |
240.0 |
| H28 |
C57 |
C48 |
H30 |
119.9 |
120.1 |
| H29 |
C57 |
C48 |
H30 |
240.0 |
240.0 |
| C42 |
C41 |
C39 |
H18 |
179.8 |
180.0 |
| C46 |
C44 |
C42 |
H20 |
180.0 |
179.8 |
| C42 |
C44 |
C46 |
H21 |
180.0 |
179.9 |
| C46 |
C44 |
C42 |
H19 |
180.1 |
179.8 |
| C42 |
C44 |
C46 |
H20 |
180.0 |
180.2 |
| C39 |
C38 |
C35 |
H16 |
188.1 |
330.0 |
| C39 |
C38 |
C35 |
H17 |
308.1 |
210.0 |
| C46 |
C38 |
C35 |
H16 |
8.5 |
149.7 |
| C46 |
C38 |
C35 |
H17 |
128.4 |
29.7 |
| C38 |
C35 |
N33 |
H14 |
174.5 |
303.9 |
| H16 |
C35 |
C38 |
H17 |
240.0 |
120.0 |
| C35 |
N33 |
C23 |
H8 |
312.5 |
325.2 |
| C25 |
C23 |
N33 |
H8 |
113.8 |
119.7 |
| N33 |
C23 |
C25 |
H9 |
310.0 |
303.0 |
| N33 |
C23 |
C25 |
H10 |
70.2 |
63.3 |
| N33 |
C23 |
C21 |
H7 |
294.9 |
289.5 |
| C23 |
C21 |
O61 |
H7 |
243.8 |
240.6 |
| O61 |
C21 |
C19 |
H6 |
60.1 |
70.9 |
| N33 |
C23 |
C25 |
H8 |
245.8 |
240.3 |
| C25 |
C23 |
C21 |
H7 |
64.8 |
49.7 |
| C23 |
C25 |
S28 |
O32 |
189.8 |
190.7 |
| C23 |
C25 |
S28 |
C29 |
300.1 |
306.8 |
| S28 |
C25 |
C23 |
H9 |
240.1 |
240.1 |
| S28 |
C25 |
C23 |
H10 |
119.9 |
119.8 |
| H9 |
C25 |
C23 |
H10 |
239.9 |
239.7 |
| O61 |
C21 |
C23 |
H7 |
117.3 |
119.4 |
| C23 |
C21 |
C19 |
C29 |
55.9 |
70.7 |
| C23 |
C21 |
C19 |
H6 |
300.5 |
310.7 |
| S28 |
C25 |
C23 |
H8 |
304.3 |
302.9 |
| C23 |
C25 |
S28 |
H9 |
119.9 |
119.9 |
| C23 |
C25 |
S28 |
H10 |
240.0 |
240.2 |
| C29 |
S28 |
C25 |
O32 |
110.4 |
116.0 |
| C19 |
C29 |
S28 |
C25 |
64.7 |
53.2 |
| C25 |
S28 |
C29 |
H11 |
184.8 |
293.5 |
| C25 |
S28 |
C29 |
H12 |
304.6 |
173.0 |
| H9 |
C25 |
S28 |
H10 |
120.1 |
120.3 |
| C21 |
C19 |
C29 |
S28 |
294.8 |
297.0 |
| C21 |
C19 |
C16 |
H4 |
307.0 |
54.5 |
| C21 |
C19 |
C16 |
H5 |
66.3 |
294.5 |
| C29 |
C19 |
C21 |
H6 |
115.4 |
120.1 |
| C21 |
C19 |
C29 |
H11 |
174.7 |
56.8 |
| C21 |
C19 |
C29 |
H12 |
54.9 |
177.2 |
| F63 |
C10 |
C9 |
N64 |
0.4 |
0.0 |
| C25 |
S28 |
O32 |
C29 |
104.6 |
111.3 |
| O32 |
S28 |
C25 |
H9 |
69.8 |
70.9 |
| O32 |
S28 |
C25 |
H10 |
309.7 |
310.5 |
| C19 |
C29 |
S28 |
O32 |
175.1 |
169.3 |
| O32 |
S28 |
C29 |
H11 |
295.2 |
49.5 |
| O32 |
S28 |
C29 |
H12 |
55.0 |
289.0 |
| C25 |
S28 |
C29 |
O32 |
249.6 |
244.0 |
| C29 |
S28 |
C25 |
H9 |
180.2 |
186.9 |
| C29 |
S28 |
C25 |
H10 |
60.1 |
66.6 |
| S28 |
C29 |
C19 |
H6 |
50.2 |
57.1 |
| C19 |
C29 |
S28 |
H11 |
239.9 |
119.8 |
| C19 |
C29 |
S28 |
H12 |
120.1 |
240.2 |
| H11 |
C29 |
S28 |
H12 |
240.2 |
120.5 |
| H4 |
C16 |
C19 |
H5 |
240.8 |
120.0 |
| C25 |
S28 |
C29 |
C19 |
64.7 |
53.2 |
| C21 |
C19 |
C29 |
H6 |
244.6 |
239.9 |
| S28 |
C29 |
C19 |
H11 |
120.1 |
240.2 |
| S28 |
C29 |
C19 |
H12 |
239.9 |
119.8 |
| C29 |
C19 |
C16 |
H4 |
73.1 |
175.0 |
| C29 |
C19 |
C16 |
H5 |
192.4 |
55.0 |
| H11 |
C29 |
C19 |
H12 |
119.8 |
239.6 |
| C11 |
C10 |
C9 |
N64 |
180.7 |
180.0 |
| C11 |
C13 |
C14 |
H3 |
180.8 |
180.0 |
| C10 |
C9 |
N64 |
H32 |
180.0 |
180.0 |
| C10 |
C9 |
N64 |
H33 |
300.0 |
359.9 |
| C16 |
C13 |
C11 |
H2 |
358.5 |
360.0 |
| C16 |
C13 |
C14 |
H3 |
1.6 |
359.8 |
| C14 |
C13 |
C11 |
H2 |
179.3 |
179.7 |
| H32 |
N64 |
C9 |
H33 |
239.9 |
180.1 |
| C8 |
O7 |
C5 |
C67 |
127.5 |
148.2 |
| C8 |
O7 |
C5 |
H1 |
12.0 |
28.2 |
| O7 |
C5 |
C67 |
F69 |
52.9 |
180.0 |
| O7 |
C5 |
C67 |
F68 |
175.0 |
60.0 |
| C67 |
C5 |
O7 |
H1 |
115.5 |
120.1 |
| O7 |
C5 |
C67 |
H1 |
243.6 |
240.0 |
| F68 |
C67 |
C5 |
F69 |
122.0 |
240.1 |
| F70 |
C67 |
C5 |
H1 |
50.5 |
60.0 |
| C5 |
C67 |
F69 |
F68 |
122.5 |
240.0 |
| F69 |
C67 |
C5 |
H1 |
169.3 |
300.0 |
| C5 |
C67 |
F68 |
F69 |
237.8 |
120.0 |
| F68 |
C67 |
C5 |
H1 |
291.4 |
180.1 |
| O7 |
C5 |
H1 |
C67 |
114.4 |
120.0 |
| H1 |
C5 |
C67 |
F69 |
169.3 |
300.0 |
| H1 |
C5 |
C67 |
F68 |
291.4 |
180.1 |
| H2 |
C11 |
C13 |
C14 |
179.3 |
179.7 |
| C19 |
C16 |
H4 |
H5 |
118.8 |
240.0 |
| C19 |
C16 |
H5 |
H4 |
241.2 |
120.0 |
| C21 |
C19 |
H6 |
C29 |
117.7 |
120.4 |
| H6 |
C19 |
C29 |
S28 |
50.2 |
57.1 |
| H6 |
C19 |
C16 |
H4 |
189.1 |
294.7 |
| H6 |
C19 |
C16 |
H5 |
308.3 |
174.7 |
| H6 |
C19 |
C29 |
H11 |
290.1 |
176.9 |
| H6 |
C19 |
C29 |
H12 |
170.3 |
297.3 |
| H7 |
C21 |
C19 |
C29 |
296.3 |
310.3 |
| H7 |
C21 |
C19 |
H6 |
181.0 |
190.2 |
| H8 |
C23 |
C25 |
S28 |
304.3 |
302.9 |
| H8 |
C23 |
C25 |
H9 |
64.2 |
62.8 |
| H8 |
C23 |
C25 |
H10 |
184.4 |
183.1 |
| H8 |
C23 |
C21 |
H7 |
179.8 |
169.7 |
| C23 |
C25 |
H9 |
S28 |
240.4 |
240.6 |
| H9 |
C25 |
C23 |
H8 |
64.2 |
62.8 |
| C23 |
C25 |
H9 |
H10 |
120.2 |
120.3 |
| H9 |
C25 |
S28 |
O32 |
69.8 |
70.9 |
| H9 |
C25 |
S28 |
C29 |
180.2 |
186.9 |
| S28 |
C25 |
H9 |
H10 |
239.8 |
239.7 |
| C23 |
C25 |
H10 |
S28 |
119.6 |
119.4 |
| H10 |
C25 |
C23 |
H8 |
184.4 |
183.1 |
| C23 |
C25 |
H10 |
H9 |
239.8 |
239.7 |
| H10 |
C25 |
S28 |
O32 |
309.7 |
310.5 |
| H10 |
C25 |
S28 |
C29 |
60.1 |
66.6 |
| S28 |
C25 |
H10 |
H9 |
120.2 |
120.3 |
| H11 |
C29 |
S28 |
O32 |
295.2 |
49.5 |
| C19 |
C29 |
H11 |
S28 |
120.7 |
240.7 |
| S28 |
C29 |
H11 |
H12 |
119.7 |
239.7 |
| H11 |
C29 |
C19 |
H6 |
290.1 |
176.9 |
| C19 |
C29 |
H11 |
H12 |
240.3 |
120.3 |
| H12 |
C29 |
S28 |
O32 |
55.0 |
289.0 |
| C19 |
C29 |
H12 |
S28 |
239.4 |
119.3 |
| S28 |
C29 |
H12 |
H11 |
240.3 |
120.4 |
| H12 |
C29 |
C19 |
H6 |
170.3 |
297.3 |
| C19 |
C29 |
H12 |
H11 |
119.7 |
239.7 |
| H14 |
N33 |
C23 |
H8 |
190.8 |
201.4 |
| C38 |
C35 |
H16 |
H17 |
119.9 |
240.0 |
| H16 |
C35 |
N33 |
H14 |
54.5 |
63.9 |
| C38 |
C35 |
H17 |
H16 |
240.1 |
120.0 |
| H17 |
C35 |
N33 |
H14 |
294.5 |
183.9 |
| H19 |
C42 |
C44 |
C46 |
180.1 |
179.8 |
| H19 |
C42 |
C44 |
H20 |
0.1 |
360.0 |
| C42 |
C44 |
H20 |
C46 |
180.0 |
179.8 |
| H20 |
C44 |
C42 |
H19 |
0.1 |
360.0 |
| H20 |
C44 |
C46 |
H21 |
0.0 |
359.7 |
| H21 |
C46 |
C44 |
H20 |
0.0 |
359.7 |
| H22 |
C49 |
C48 |
C57 |
65.7 |
180.1 |
| H23 |
C49 |
H22 |
H24 |
120.0 |
120.0 |
| H23 |
C49 |
C48 |
C57 |
185.7 |
300.0 |
| H22 |
C49 |
H23 |
H24 |
240.0 |
240.0 |
| H24 |
C49 |
C48 |
C57 |
305.7 |
60.0 |
| H22 |
C49 |
H24 |
H23 |
120.0 |
119.9 |
| H25 |
C53 |
C48 |
C57 |
295.4 |
300.0 |
| H26 |
C53 |
H25 |
H27 |
120.0 |
120.0 |
| H26 |
C53 |
C48 |
C57 |
55.5 |
60.0 |
| H25 |
C53 |
H26 |
H27 |
240.0 |
239.9 |
| H27 |
C53 |
C48 |
C57 |
175.5 |
180.0 |
| H25 |
C53 |
H27 |
H26 |
120.0 |
120.1 |
| C48 |
C57 |
H28 |
H29 |
120.0 |
120.0 |
| C48 |
C57 |
H28 |
H30 |
240.0 |
239.9 |
| H29 |
C57 |
H28 |
H30 |
120.0 |
119.9 |
| C48 |
C57 |
H29 |
H28 |
239.9 |
240.0 |
| C48 |
C57 |
H29 |
H30 |
120.0 |
120.0 |
| H28 |
C57 |
H29 |
H30 |
240.1 |
240.0 |
| C48 |
C57 |
H30 |
H28 |
120.0 |
120.1 |
| C48 |
C57 |
H30 |
H29 |
240.0 |
240.0 |
| H28 |
C57 |
H30 |
H29 |
120.0 |
119.9 |
| H31 |
O61 |
C21 |
H7 |
296.2 |
60.7 |
| C9 |
N64 |
H32 |
H33 |
120.0 |
179.9 |
| C9 |
N64 |
H33 |
H32 |
240.0 |
180.1 |