PDB Chemical Component 1YT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1YT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
F1 C2 1.359 1.399
F3 C2 1.361 1.398
C2 F4 1.351 1.399
C2 C5 1.549 1.530
O61 C21 1.439 1.429
N33 C35 1.494 1.469
N33 C23 1.493 1.469
C21 C23 1.563 1.525
C21 C19 1.561 1.525
C5 O7 1.446 1.429
C5 C67 1.556 1.530
C16 C19 1.572 1.530
C16 C13 1.538 1.508
C35 C38 1.541 1.507
C14 C13 1.412 1.382
C14 C8 1.415 1.387
C23 C25 1.559 1.532
C19 C29 1.570 1.530
O7 C8 1.392 1.360
C25 S28 1.791 1.817
C29 S28 1.792 1.818
C67 O70 1.439 1.429
C13 C11 1.422 1.383
C8 C9 1.416 1.392
C49 C48 1.559 1.530
C39 C38 1.413 1.382
C39 C41 1.426 1.382
C38 C46 1.418 1.383
S28 O32 1.509 1.421
C57 C48 1.565 1.530
O70 C71 1.441 1.429
C11 C10 1.415 1.383
C48 C41 1.572 1.507
C48 C53 1.571 1.531
C9 C10 1.416 1.388
C9 N64 1.355 1.401
C41 C42 1.430 1.382
C46 C44 1.416 1.382
C10 F63 1.328 1.351
C42 C44 1.416 1.382
C5 H1 1.100 1.090
C11 H2 1.080 1.080
C14 H3 1.080 1.079
C16 H4 1.100 1.090
C16 H5 1.100 1.089
C19 H6 1.100 1.090
C21 H7 1.100 1.090
C23 H8 1.100 1.090
C25 H9 1.100 1.090
C25 H10 1.100 1.090
C29 H11 1.100 1.090
C29 H12 1.100 1.090
N33 H14 1.000 1.010
C35 H16 1.100 1.090
C35 H17 1.100 1.090
C39 H18 1.080 1.080
C42 H19 1.080 1.080
C44 H20 1.081 1.080
C46 H21 1.080 1.080
C49 H22 1.100 1.090
C49 H23 1.100 1.091
C49 H24 1.100 1.090
C53 H25 1.100 1.090
C53 H26 1.100 1.090
C53 H27 1.100 1.090
C57 H28 1.100 1.090
C57 H29 1.100 1.090
C57 H30 1.100 1.090
O61 H31 0.950 0.967
N64 H32 1.000 0.970
N64 H33 1.000 0.970
C67 H34 1.100 1.089
C67 H35 1.100 1.090
C71 H36 1.100 1.090
C71 H37 1.100 1.090
C71 H38 1.100 1.089

Bond Angles for 1YT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
F1 C2 F4 108.3 109.5
F1 C2 C5 109.8 109.5
F3 C2 F4 109.9 109.5
F3 C2 C5 112.0 109.5
F4 C2 C5 108.1 109.5
C2 C5 O7 108.3 109.5
C2 C5 C67 112.0 109.5
C2 C5 H1 107.7 109.5
O61 C21 H7 109.7 109.2
N33 C35 C38 110.2 109.5
C35 N33 H14 106.2 111.0
N33 C35 H16 109.3 109.5
N33 C35 H17 109.3 109.5
N33 C23 H8 108.3 109.3
C21 C23 C25 114.2 110.0
C23 C21 H7 108.1 109.2
C21 C23 H8 107.4 109.4
C21 C19 C29 109.4 110.0
C21 C19 H6 106.7 109.3
O7 C5 C67 112.0 109.4
C5 O7 C8 119.7 117.0
O7 C5 H1 109.0 109.5
C5 C67 O70 108.9 109.5
C67 C5 H1 107.6 109.5
C5 C67 H34 109.6 109.5
C5 C67 H35 109.6 109.4
C16 C19 C29 112.0 109.4
C19 C16 H4 108.9 109.5
C19 C16 H5 108.9 109.5
C16 C19 H6 106.5 109.4
C35 C38 C46 120.6 120.0
C38 C35 H16 109.3 109.5
C38 C35 H17 109.3 109.4
C23 C25 S28 112.6 108.8
C25 C23 H8 107.5 109.4
C23 C25 H9 108.7 109.5
C23 C25 H10 108.7 109.5
C19 C29 S28 111.2 108.9
C29 C19 H6 106.6 109.4
C19 C29 H11 109.1 109.6
C19 C29 H12 109.0 109.6
O7 C8 C9 118.7 120.1
C25 S28 O32 109.4 109.5
S28 C25 H9 108.7 109.6
S28 C25 H10 108.7 109.6
C29 S28 O32 105.3 109.5
C67 O70 C71 113.6 114.0
O70 C67 H34 109.6 109.5
O70 C67 H35 109.6 109.5
C13 C11 H2 120.0 120.0
C8 C9 C10 119.4 119.8
C8 C9 N64 120.0 120.0
C49 C48 C53 107.1 109.4
C39 C38 C46 119.6 120.0
C39 C41 C42 115.9 120.0
C41 C39 H18 118.6 120.0
C38 C46 C44 119.4 120.0
C38 C46 H21 120.2 120.0
O70 C71 H36 109.5 109.5
O70 C71 H37 109.5 109.4
O70 C71 H38 109.5 109.4
C11 C10 F63 120.0 120.0
C48 C53 H25 109.5 109.5
C48 C53 H26 109.5 109.5
C48 C53 H27 109.5 109.4
C10 C9 N64 120.6 120.2
C9 C10 F63 119.6 120.0
C9 N64 H32 109.5 120.1
C9 N64 H33 109.5 120.0
C41 C42 C44 122.4 120.0
C41 C42 H19 118.8 120.0
C46 C44 H20 120.1 120.0
C44 C42 H19 118.8 120.0
C42 C44 H20 120.1 120.0
H4 C16 H5 109.5 109.5
H9 C25 H10 109.5 109.7
H11 C29 H12 109.4 109.7
H16 C35 H17 109.5 109.5
H22 C49 H23 109.5 109.4
H22 C49 H24 109.5 109.4
H23 C49 H24 109.5 109.5
H25 C53 H26 109.5 109.5
H25 C53 H27 109.4 109.4
H26 C53 H27 109.5 109.5
H28 C57 H29 109.4 109.5
H28 C57 H30 109.5 109.5
H29 C57 H30 109.5 109.5
H32 N64 H33 109.4 119.9
H34 C67 H35 109.5 109.5
H36 C71 H37 109.5 109.5
H36 C71 H38 109.5 109.5
H37 C71 H38 109.5 109.5

Torsion Angles for 1YT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
F3 C2 F1 F4 240.6 240.0
F3 C2 F1 C5 122.8 120.0
F4 C2 F1 C5 242.2 240.0
F1 C2 C5 O7 297.4 60.0
F1 C2 C5 C67 173.4 300.0
F1 C2 C5 H1 55.3 180.0
F1 C2 F3 F4 118.4 120.0
F1 C2 F3 C5 238.6 240.0
F4 C2 F3 C5 120.3 120.0
F3 C2 C5 O7 176.7 300.0
F3 C2 C5 C67 52.7 180.0
F3 C2 C5 H1 294.5 60.0
F1 C2 F4 C5 118.9 120.0
F3 C2 F4 C5 237.4 240.0
F4 C2 C5 O7 55.4 180.0
F4 C2 C5 C67 291.4 60.0
F4 C2 C5 H1 173.2 300.0
F1 C2 C5 F4 242.0 240.0
F3 C2 C5 F4 121.3 120.0
O7 C5 C2 C67 124.0 120.0
C2 C5 O7 C8 126.7 85.5
O7 C5 C2 H1 242.2 240.0
C2 C5 C67 O70 179.1 54.9
C67 C5 C2 H1 118.2 120.0
C2 C5 C67 H34 299.1 175.0
C2 C5 C67 H35 59.2 295.0
C23 C21 O61 H7 243.4 240.6
O61 C21 C23 H8 298.8 289.1
O61 C21 C19 H6 66.1 70.9
C35 N33 C23 H8 310.9 324.8
N33 C35 C38 C46 247.6 90.0
C38 C35 N33 H16 239.9 240.0
C38 C35 N33 H17 120.1 120.0
H16 C35 N33 H17 240.2 240.0
N33 C23 C21 H7 299.5 289.5
C21 C23 N33 H8 242.1 240.2
C25 C23 N33 H8 116.0 119.7
N33 C23 C25 H9 301.2 303.0
N33 C23 C25 H10 60.2 63.4
O61 C21 C23 H7 117.7 119.3
N33 C23 C21 H8 118.4 119.7
C23 C21 C19 C29 61.3 70.7
C23 C21 C19 H6 306.4 310.6
C21 C23 C25 S28 56.3 63.0
C25 C23 C21 H8 240.9 239.9
C21 C23 C25 H9 176.7 182.8
C21 C23 C25 H10 295.8 303.2
C16 C19 C21 C29 127.1 120.2
C21 C19 C16 H4 302.9 54.5
C21 C19 C16 H5 62.3 294.5
C16 C19 C21 H6 242.0 240.3
C21 C19 C29 S28 293.4 297.0
C29 C19 C21 H6 114.9 120.1
C21 C19 C29 H11 53.6 56.8
C21 C19 C29 H12 173.1 177.2
C2 C5 O7 C67 236.0 240.0
C2 C5 O7 H1 117.0 120.0
O7 C5 C67 O70 57.2 295.0
C67 C5 O7 H1 241.0 240.0
O7 C5 C67 H34 177.1 55.0
O7 C5 C67 H35 297.3 175.0
C5 O7 C8 C9 131.1 185.2
C2 C5 C67 O7 121.9 120.0
C2 C5 C67 H1 241.8 240.0
C67 C5 O7 C8 250.7 205.6
O7 C5 C67 H1 119.8 120.0
C5 C67 O70 C71 172.3 180.0
O70 C67 C5 H34 240.1 239.9
O70 C67 C5 H35 119.9 120.0
H34 C67 C5 H35 239.8 240.0
C21 C19 C16 C29 234.2 239.5
C21 C19 C16 H6 118.1 119.7
C16 C19 C29 S28 164.4 176.8
C29 C19 C16 H6 243.9 240.2
C16 C19 C29 H11 284.7 296.6
C16 C19 C29 H12 44.1 57.0
H4 C16 C19 H5 240.6 120.1
C16 C13 C11 H2 358.8 359.9
C38 C35 N33 H14 174.3 304.0
N33 C35 C38 H16 120.1 120.0
N33 C35 C38 H17 239.9 240.0
C39 C38 C35 C46 179.6 180.3
C35 C38 C46 C44 179.8 179.8
C35 C38 C46 H21 359.8 0.0
H16 C35 C38 H17 119.8 120.0
C14 C13 C11 H2 179.7 179.6
C14 C8 C9 N64 180.1 180.3
N33 C23 C25 H8 243.5 240.3
C25 C23 C21 H7 62.0 49.7
C21 C23 C25 H8 119.0 120.2
C23 C25 S28 O32 56.1 62.8
S28 C25 C23 H9 239.5 240.2
S28 C25 C23 H10 120.5 119.8
H9 C25 C23 H10 240.9 239.6
C21 C19 C29 H6 245.0 240.0
C29 C19 C16 H4 68.7 175.0
C29 C19 C16 H5 188.1 55.0
C16 C19 C29 H6 116.1 119.8
C19 C29 S28 O32 306.5 297.2
H11 C29 C19 H12 240.6 239.6
C8 O7 C5 C67 250.7 205.6
C8 O7 C5 H1 9.7 325.5
O7 C8 C9 C10 180.4 180.0
O7 C8 C9 N64 0.4 0.0
S28 C25 C23 H8 297.2 302.8
C23 C25 S28 H9 120.4 119.8
C23 C25 S28 H10 239.5 240.3
C19 C29 S28 C25 59.7 53.3
C29 S28 C25 O32 250.1 244.0
H9 C25 S28 H10 119.1 120.5
S28 C29 C19 H6 48.3 57.0
C19 C29 S28 H11 120.3 119.8
C19 C29 S28 H12 239.7 240.2
C25 S28 C29 O32 113.2 116.0
C29 S28 C25 H9 185.8 187.0
C29 S28 C25 H10 66.7 66.5
O70 C67 C5 H1 297.4 175.0
C5 C67 O70 H34 119.9 120.0
C5 C67 O70 H35 240.1 240.1
C67 O70 C71 H36 180.0 300.1
C67 O70 C71 H37 300.0 60.1
C67 O70 C71 H38 60.0 180.0
H34 C67 O70 H35 120.2 120.0
C13 C11 C10 F63 180.4 180.1
C10 C9 C8 N64 180.0 180.0
C8 C9 C10 F63 179.7 180.0
C8 C9 N64 H32 180.0 360.0
C8 C9 N64 H33 300.0 180.0
C49 C48 C53 H25 180.0 180.0
C49 C48 C53 H26 300.0 300.0
C49 C48 C53 H27 60.0 60.0
C35 C38 C39 C46 180.4 179.7
C39 C38 C35 H16 307.1 150.3
C39 C38 C35 H17 187.3 30.3
C39 C38 C46 C44 0.2 359.5
C39 C38 C46 H21 180.2 179.7
C41 C39 C38 C46 359.8 0.3
C39 C41 C42 C44 359.6 359.9
C39 C41 C42 H19 179.6 179.9
C46 C38 C35 H16 127.5 330.0
C46 C38 C35 H17 7.7 210.0
C38 C46 C44 H20 179.7 180.3
O32 S28 C25 H9 295.7 303.0
O32 S28 C25 H10 176.6 182.5
C57 C48 C53 H25 294.9 299.9
C57 C48 C53 H26 54.9 60.0
C57 C48 C53 H27 174.9 180.0
C71 O70 C67 H34 52.4 60.0
C71 O70 C67 H35 292.2 299.9
H36 C71 O70 H37 240.0 240.0
H36 C71 O70 H38 120.0 120.0
H37 C71 O70 H38 240.0 240.0
C11 C10 C9 N64 180.0 180.0
C9 C10 C11 F63 179.7 179.9
C48 C41 C39 H18 359.8 360.0
C48 C41 C42 H19 0.1 0.0
H25 C53 C48 H26 240.0 240.0
H25 C53 C48 H27 120.0 119.9
H26 C53 C48 H27 240.0 240.0
C8 C9 C10 N64 180.0 180.0
C11 C10 C9 F63 180.3 180.1
C10 C9 N64 H32 360.0 180.0
C10 C9 N64 H33 119.9 0.0
C8 C9 N64 C10 180.0 180.0
N64 C9 C10 F63 359.7 359.9
H32 N64 C9 H33 240.0 180.0
C42 C41 C39 H18 180.3 180.0
C44 C42 C41 H19 180.0 180.0
C41 C42 C44 H20 180.4 180.0
C38 C46 C44 H21 180.0 180.2
C46 C44 C42 H19 180.4 179.8
C42 C44 C46 H20 180.0 180.1
F63 C10 C9 N64 359.7 359.9
C38 C46 C44 C42 359.7 0.4
C41 C42 C44 H19 180.0 180.0
C46 C44 C42 H20 180.0 179.9
C2 C5 H1 O7 242.6 240.0
C2 C5 H1 C67 120.9 120.0
O7 C5 H1 C67 238.3 240.0
H1 C5 O7 C8 9.7 325.5
H1 C5 C67 O70 297.4 175.0
H1 C5 C67 H34 57.3 295.0
H1 C5 C67 H35 177.5 55.0
H2 C11 C10 F63 0.4 0.2
H4 C16 C19 C29 68.7 175.0
C19 C16 H4 H5 119.0 240.0
H4 C16 C19 H6 184.8 294.8
H5 C16 C19 C29 188.1 55.0
C19 C16 H5 H4 241.0 120.0
H5 C16 C19 H6 304.2 174.8
C21 C19 H6 C29 116.8 120.5
C16 C19 H6 C29 240.3 240.2
H6 C19 C16 H4 184.8 294.8
H6 C19 C16 H5 304.2 174.8
H6 C19 C29 S28 48.3 57.0
H6 C19 C29 H11 168.6 176.8
H6 C19 C29 H12 288.0 297.2
H7 C21 C23 C25 62.0 49.7
H7 C21 C23 H8 181.1 169.8
H7 C21 C19 C29 302.2 310.3
H7 C21 C19 H6 187.3 190.2
C21 C23 H8 C25 236.7 239.5
H8 C23 C21 H7 181.1 169.8
H8 C23 C25 S28 297.2 302.8
H8 C23 C25 H9 57.7 62.7
H8 C23 C25 H10 176.8 183.1
C23 C25 H9 S28 237.1 240.7
H9 C25 C23 H8 57.7 62.7
C23 C25 H9 H10 118.5 120.3
H9 C25 S28 O32 295.7 303.0
S28 C25 H9 H10 241.4 239.6
C23 C25 H10 S28 122.9 119.3
H10 C25 C23 H8 176.8 183.1
C23 C25 H10 H9 241.5 239.7
H10 C25 S28 O32 176.6 182.5
S28 C25 H10 H9 118.6 120.4
C19 C29 H11 S28 238.4 240.6
H11 C29 C19 H6 168.6 176.8
C19 C29 H11 H12 119.2 120.3
H11 C29 S28 O32 186.3 177.4
C19 C29 H12 S28 121.6 119.4
H12 C29 C19 H6 288.0 297.2
C19 C29 H12 H11 240.8 239.7
H12 C29 S28 O32 66.8 57.1
H14 N33 C35 C38 174.3 304.0
H14 N33 C35 H16 294.4 64.0
H14 N33 C35 H17 54.2 184.0
H14 N33 C23 H8 189.1 200.8
N33 C35 H16 C38 239.4 240.0
H16 C35 N33 H14 294.4 64.0
N33 C35 H16 H17 119.7 120.0
H16 C35 C38 C46 127.5 330.0
C38 C35 H16 H17 240.3 240.0
N33 C35 H17 C38 120.6 120.0
H17 C35 N33 H14 54.2 184.0
N33 C35 H17 H16 240.3 240.0
H17 C35 C38 C46 7.7 210.0
C38 C35 H17 H16 119.7 120.0
H18 C39 C38 C46 179.8 180.2
H18 C39 C41 C42 180.3 180.0
C41 C42 H19 C44 180.0 180.0
H19 C42 C44 H20 0.4 360.0
H20 C44 C42 H19 0.4 360.0
C38 C46 H21 C44 180.0 179.8
H21 C46 C44 H20 359.7 0.1
H22 C49 C48 C53 293.4 300.0
H23 C49 H22 H24 120.0 119.9
H23 C49 C48 C53 53.4 60.0
H22 C49 H23 H24 240.0 240.1
H24 C49 C48 C53 173.3 180.0
H22 C49 H24 H23 120.0 119.9
C48 C53 H25 H26 120.0 120.0
C48 C53 H25 H27 240.0 240.1
H26 C53 H25 H27 120.0 120.0
C48 C53 H26 H25 240.0 240.0
C48 C53 H26 H27 120.0 120.0
H25 C53 H26 H27 240.0 240.0
C48 C53 H27 H25 120.0 119.9
C48 C53 H27 H26 240.0 240.0
H25 C53 H27 H26 120.0 120.0
H29 C57 H28 H30 120.0 120.0
H28 C57 H29 H30 240.0 240.0
H28 C57 H30 H29 119.9 120.0
H31 O61 C21 H7 296.7 59.4
C9 N64 H32 H33 120.0 180.0
C9 N64 H33 H32 240.0 180.0
C5 C67 H34 O70 240.5 240.0
H34 C67 C5 H1 57.3 295.0
C5 C67 H34 H35 120.3 120.0
H34 C67 O70 C71 52.4 60.0
O70 C67 H34 H35 239.7 240.0
C5 C67 H35 O70 119.5 120.0
H35 C67 C5 H1 177.5 55.0
C5 C67 H35 H34 239.8 240.0
H35 C67 O70 C71 292.2 299.9
O70 C67 H35 H34 120.3 120.1
O70 C71 H36 H37 120.0 120.0
O70 C71 H36 H38 240.0 240.0
H37 C71 H36 H38 120.0 120.0
O70 C71 H37 H36 240.0 240.0
O70 C71 H37 H38 120.0 119.9
H36 C71 H37 H38 240.0 239.9
O70 C71 H38 H36 120.0 120.0
O70 C71 H38 H37 240.0 240.1
H36 C71 H38 H37 120.0 120.1