PDB Chemical Component 1YR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1YR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C15	C17	1.425	1.432
C15	C0M	1.359	1.348
C17	N19	1.145	1.137
C00	C01	1.413	1.382
C00	C05	1.413	1.385
C01	C02	1.409	1.383
C02	C03	1.408	1.382
C03	C04	1.425	1.386
C04	C05	1.439	1.392
C04	O0A	1.379	1.361
C05	O0B	1.385	1.360
O0A	C0C	1.380	1.358
O0B	C0O	1.423	1.429
C0C	C0D	1.419	1.388
C0C	C0H	1.417	1.385
C0D	C0E	1.407	1.384
C0E	C0F	1.412	1.380
C0E	BR1	1.866	1.891
C0F	C0G	1.412	1.398
C0G	C0H	1.426	1.398
C0G	C0M	1.448	1.472
C0O	C0P	1.539	1.530
C0P	N0S	1.476	1.466
N0S	C0V	1.373	1.345
N0S	C0Z	1.421	1.369
C0V	N0W	1.357	1.346
C0V	O10	1.231	1.216
N0W	C0X	1.354	1.349
C0X	C0Y	1.467	1.415
C0X	O12	1.223	1.218
C0Y	C0Z	1.357	1.350
C01	CL1	1.719	1.736
C15	H1	1.080	1.080
C00	H3	1.080	1.081
C02	H4	1.081	1.080
C03	H5	1.080	1.080
C0D	H9	1.080	1.080
C0F	H10	1.080	1.080
C0H	H11	1.080	1.080
C0M	H12	1.080	1.080
C0O	H14	1.099	1.090
C0O	H15	1.101	1.090
C0P	H16	1.101	1.090
C0P	H17	1.101	1.090
N0W	H18	1.000	0.969
C0Y	H19	1.080	1.080
C0Z	H20	1.080	1.080

Bond Angles for 1YR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C17	C15	C0M	121.8	120.0
C15	C17	N19	179.5	180.0
C17	C15	H1	119.1	120.0
C15	C0M	C0G	123.8	120.0
C0M	C15	H1	119.1	120.0
C15	C0M	H12	118.1	120.1
C01	C00	C05	121.5	120.0
C00	C01	C02	120.3	120.2
C00	C01	CL1	119.5	119.9
C01	C00	H3	119.3	120.0
C00	C05	C04	118.2	119.8
C00	C05	O0B	113.4	120.1
C05	C00	H3	119.3	120.0
C01	C02	C03	119.4	120.1
C02	C01	CL1	120.2	119.9
C01	C02	H4	120.3	120.0
C02	C03	C04	120.9	120.0
C03	C02	H4	120.3	119.9
C02	C03	H5	119.6	120.0
C03	C04	C05	119.7	119.9
C03	C04	O0A	118.7	120.1
C04	C03	H5	119.6	120.0
C05	C04	O0A	121.6	120.0
C04	C05	O0B	128.4	120.1
C04	O0A	C0C	121.5	118.0
C05	O0B	C0O	124.3	117.0
O0A	C0C	C0D	123.6	120.0
O0A	C0C	C0H	117.3	119.9
O0B	C0O	C0P	110.4	109.5
O0B	C0O	H14	109.2	109.5
O0B	C0O	H15	109.2	109.5
C0D	C0C	C0H	119.1	120.1
C0C	C0D	C0E	120.2	120.3
C0C	C0D	H9	119.9	119.9
C0C	C0H	C0G	121.3	119.8
C0C	C0H	H11	119.4	120.1
C0D	C0E	C0F	119.9	120.2
C0D	C0E	BR1	119.5	119.9
C0E	C0D	H9	119.9	119.8
C0F	C0E	BR1	120.5	119.9
C0E	C0F	C0G	121.4	120.0
C0E	C0F	H10	119.3	120.0
C0F	C0G	C0H	118.0	119.7
C0F	C0G	C0M	115.8	120.2
C0G	C0F	H10	119.3	120.0
C0H	C0G	C0M	126.3	120.2
C0G	C0H	H11	119.3	120.1
C0G	C0M	H12	118.1	120.0
C0O	C0P	N0S	110.0	109.4
C0P	C0O	H14	109.3	109.4
C0P	C0O	H15	109.2	109.4
C0O	C0P	H16	109.3	109.4
C0O	C0P	H17	109.3	109.4
C0P	N0S	C0V	122.6	119.7
C0P	N0S	C0Z	116.0	119.7
N0S	C0P	H16	109.3	109.5
N0S	C0P	H17	109.3	109.5
C0V	N0S	C0Z	121.4	120.6
N0S	C0V	N0W	115.9	120.9
N0S	C0V	O10	123.8	119.5
N0S	C0Z	C0Y	120.3	119.6
N0S	C0Z	H20	119.8	120.1
N0W	C0V	O10	120.3	119.5
C0V	N0W	C0X	127.9	120.2
C0V	N0W	H18	116.0	119.9
N0W	C0X	C0Y	115.1	119.4
N0W	C0X	O12	121.2	120.3
C0X	N0W	H18	116.0	119.9
C0Y	C0X	O12	123.7	120.3
C0X	C0Y	C0Z	119.3	119.1
C0X	C0Y	H19	120.3	120.5
C0Z	C0Y	H19	120.3	120.4
C0Y	C0Z	H20	119.8	120.2
H14	C0O	H15	109.5	109.5
H16	C0P	H17	109.5	109.5

Torsion Angles for 1YR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C17	C15	C0M	C0G	155.2	180.0
C0M	C15	C17	H1	180.0	180.2
C17	C15	C0M	H12	335.2	0.1
C0M	C15	C17	N19	62.4	315.6
C17	C15	C0M	H1	180.0	179.8
C0F	C0G	C0M	C15	198.0	0.1
C0H	C0G	C0M	C15	18.3	180.3
C0G	C0M	C15	H12	180.0	180.0
N19	C17	C15	C0M	62.4	315.6
N19	C17	C15	H1	242.4	135.4
C01	C00	C05	C04	359.8	0.0
C01	C00	C05	O0B	180.1	179.9
C05	C00	C01	H3	180.0	180.3
C00	C01	C02	C03	0.0	359.9
C02	C01	C00	CL1	180.0	180.1
C00	C01	C02	H4	180.0	180.0
C05	C00	C01	C02	360.0	0.1
C05	C00	C01	CL1	180.0	180.0
C01	C00	C05	H3	180.0	179.7
C03	C04	C05	C00	0.3	360.0
C00	C05	C04	O0A	179.7	180.0
C04	C05	C00	O0B	179.8	180.1
C00	C05	O0B	C0O	23.0	0.0
C02	C01	C00	C05	360.0	0.1
C00	C01	C02	CL1	180.0	179.9
C02	C01	C00	H3	180.0	179.8
C01	C02	C03	C04	0.1	0.1
C03	C02	C01	H4	180.0	179.9
C01	C02	C03	H5	180.1	180.0
C03	C02	C01	CL1	180.0	180.0
C01	C02	C03	H4	180.0	180.1
C02	C03	C04	C05	359.7	360.0
C02	C03	C04	O0A	180.3	179.9
C04	C03	C02	H5	180.0	180.1
C00	C05	C04	C03	0.3	360.0
C04	C03	C02	H4	180.1	180.0
C02	C03	C04	H5	180.0	179.9
C05	C04	C03	O0A	179.4	180.0
C03	C04	C05	O0B	180.0	180.0
C03	C04	O0A	C0C	75.1	0.6
C00	C05	C04	O0B	180.3	179.9
C04	C05	C00	H3	179.8	180.3
C03	C04	C05	O0A	180.6	180.0
C05	C04	C03	H5	179.8	180.1
C05	C04	O0A	C0C	255.7	180.5
C04	C05	O0B	C0O	203.2	180.0
C03	C04	O0A	C05	179.4	180.0
O0A	C04	C03	H5	0.3	0.1
O0A	C04	C05	O0B	359.4	0.1
C04	O0A	C0C	C0D	9.3	89.9
C04	O0A	C0C	C0H	189.2	269.6
C00	C05	O0B	C04	179.8	180.1
O0B	C05	C00	H3	0.0	0.2
O0B	C05	C04	O0A	359.4	0.1
C05	O0B	C0O	C0P	169.5	180.0
C05	O0B	C0O	H14	289.6	299.9
C05	O0B	C0O	H15	49.3	60.0
C0D	C0C	O0A	C0H	180.1	180.3
O0A	C0C	C0D	C0E	180.1	180.0
O0A	C0C	C0D	H9	0.0	360.0
O0A	C0C	C0H	C0G	180.0	179.7
O0A	C0C	C0H	H11	0.0	360.0
O0B	C0O	C0P	N0S	299.2	65.0
C0P	C0O	O0B	H14	239.9	240.0
C0P	C0O	O0B	H15	120.1	120.0
O0B	C0O	C0P	H16	59.2	185.0
O0B	C0O	C0P	H17	179.1	305.0
H14	C0O	O0B	H15	240.3	240.0
O0A	C0C	C0D	C0H	179.9	179.7
C0D	C0C	C0H	C0G	359.9	359.5
C0D	C0C	C0H	H11	179.9	179.7
C0C	C0D	C0E	C0F	359.7	360.0
C0C	C0D	C0E	BR1	179.9	180.0
C0E	C0D	C0C	H9	180.0	180.0
O0A	C0C	C0H	C0D	180.1	180.3
C0H	C0C	C0D	C0E	0.2	0.3
C0H	C0C	C0D	H9	180.2	180.2
C0F	C0G	C0H	C0C	0.1	0.5
C0C	C0H	C0G	C0M	179.8	180.3
C0G	C0H	C0C	H11	180.0	179.8
C0E	C0D	C0C	C0H	0.2	0.3
C0C	C0D	C0E	H9	180.0	180.0
C0F	C0E	C0D	BR1	179.8	179.9
C0D	C0E	C0F	C0G	0.3	0.0
C0D	C0E	C0F	H10	180.4	180.0
C0D	C0E	C0F	BR1	180.2	180.1
C0F	C0E	C0D	H9	179.7	180.0
C0E	C0F	C0G	C0H	359.8	359.7
C0E	C0F	C0G	C0M	180.0	180.0
C0G	C0F	C0E	H10	180.0	180.0
C0D	C0E	BR1	C0F	179.8	179.9
BR1	C0E	C0D	H9	359.9	0.1
BR1	C0E	C0F	C0G	180.2	180.0
BR1	C0E	C0F	H10	0.2	359.9
C15	C0M	C0G	C0F	198.0	0.1
C0C	C0H	C0G	C0F	0.1	0.5
C0G	C0F	C0E	BR1	180.2	180.0
C0E	C0F	C0G	H10	180.0	180.0
C0H	C0G	C0F	C0M	179.7	179.8
C0F	C0G	C0H	H11	180.1	180.3
C0F	C0G	C0M	H12	18.0	180.0
C15	C0M	C0G	C0H	18.3	180.3
C0C	C0H	C0G	H11	180.0	180.2
C0F	C0G	C0H	C0M	180.3	180.2
C0H	C0G	C0F	H10	179.8	179.8
C0H	C0G	C0M	H12	198.3	0.2
C0G	C0M	C15	H1	335.2	0.2
C15	C0M	C0G	H12	180.0	180.0
C0F	C0G	C0M	C0H	179.7	179.8
C0M	C0G	C0F	H10	0.0	360.0
C0M	C0G	C0H	H11	359.8	0.1
O0B	C0O	C0P	H14	120.1	120.0
O0B	C0O	C0P	H15	239.9	240.0
C0O	C0P	N0S	C0V	269.9	90.0
C0O	C0P	N0S	C0Z	89.8	269.7
N0S	C0P	C0O	H16	239.9	240.0
N0S	C0P	C0O	H17	120.1	120.0
H14	C0O	C0P	H15	119.7	120.0
H16	C0P	C0O	H17	240.2	240.0
N0S	C0P	C0O	H14	179.0	305.0
N0S	C0P	C0O	H15	59.3	185.0
C0O	C0P	N0S	H16	120.1	120.0
C0O	C0P	N0S	H17	239.9	240.0
C0V	N0S	C0P	C0Z	180.0	180.3
C0P	N0S	C0V	N0W	179.8	180.0
C0P	N0S	C0V	O10	359.9	359.9
C0P	N0S	C0Z	C0Y	180.2	179.8
C0P	N0S	C0Z	H20	0.2	360.0
H16	C0P	N0S	H17	119.8	120.1
C0P	N0S	C0V	C0Z	180.0	179.7
C0V	N0S	C0P	H16	149.8	330.1
C0V	N0S	C0P	H17	29.9	210.0
C0V	N0S	C0Z	C0Y	0.2	359.5
C0V	N0S	C0Z	H20	180.2	179.7
N0W	C0V	N0S	O10	179.9	180.1
N0S	C0V	N0W	C0X	0.1	359.9
N0S	C0V	N0W	H18	180.1	179.9
C0P	N0S	C0Z	C0V	180.0	180.3
C0Z	N0S	C0P	H16	329.7	149.8
C0Z	N0S	C0P	H17	209.9	29.7
C0Z	N0S	C0V	N0W	359.9	0.3
C0Z	N0S	C0V	O10	179.9	180.2
C0X	C0Y	C0Z	N0S	359.8	0.5
N0S	C0Z	C0Y	H19	179.8	180.3
C0Y	C0Z	N0S	H20	180.0	179.8
N0W	C0V	N0S	C0Z	359.9	0.3
N0S	C0V	N0W	O10	180.1	179.9
C0V	N0W	C0X	C0Y	359.9	0.1
C0V	N0W	C0X	O12	179.9	180.0
C0X	N0W	C0V	H18	180.0	180.0
O10	C0V	N0S	C0Z	179.9	180.2
N0S	C0V	O10	N0W	179.9	180.1
O10	C0V	N0W	C0X	180.0	180.0
O10	C0V	N0W	H18	0.0	0.0
C0X	N0W	C0V	O10	180.0	180.0
C0V	N0W	C0X	H18	180.0	180.0
C0Y	C0X	N0W	O12	180.0	180.1
N0W	C0X	C0Y	C0Z	0.1	359.7
N0W	C0X	C0Y	H19	180.2	180.0
N0S	C0Z	C0Y	C0X	359.8	0.5
N0W	C0X	C0Y	O12	180.0	179.9
C0Y	C0X	N0W	H18	179.9	180.1
C0Z	C0Y	C0X	H19	180.0	179.8
C0X	C0Y	C0Z	H20	179.8	180.3
N0W	C0X	O12	C0Y	180.0	180.1
O12	C0X	N0W	H18	359.9	360.0
O12	C0X	C0Y	C0Z	180.1	179.8
O12	C0X	C0Y	H19	0.2	0.0
N0S	C0Z	C0Y	H20	180.0	180.2
C0Z	C0Y	C0X	O12	180.1	179.8
C0X	C0Y	C0Z	H19	180.0	180.2
CL1	C01	C00	C05	180.0	180.0
C00	C01	CL1	C02	180.0	180.1
CL1	C01	C00	H3	0.0	359.7
CL1	C01	C02	C03	180.0	180.0
CL1	C01	C02	H4	360.0	0.1
C17	C15	H1	C0M	180.0	180.2
H1	C15	C17	N19	242.4	135.4
H1	C15	C0M	C0G	335.2	0.2
H1	C15	C0M	H12	155.2	180.2
C01	C00	H3	C05	180.0	180.3
H3	C00	C01	C02	180.0	179.8
H3	C00	C01	CL1	0.0	359.7
H3	C00	C05	C04	179.8	180.3
H3	C00	C05	O0B	0.0	0.2
C01	C02	H4	C03	180.0	179.9
H4	C02	C01	CL1	360.0	0.1
H4	C02	C03	C04	180.1	180.0
H4	C02	C03	H5	0.1	359.8
C02	C03	H5	C04	180.0	180.1
H5	C03	C02	H4	0.1	359.8
H5	C03	C04	C05	179.8	180.1
H5	C03	C04	O0A	0.3	0.1
H9	C0D	C0C	C0H	180.2	180.2
C0C	C0D	H9	C0E	180.0	180.0
H9	C0D	C0E	C0F	179.7	180.0
H9	C0D	C0E	BR1	359.9	0.1
H10	C0F	C0E	BR1	0.2	359.9
C0E	C0F	H10	C0G	180.0	180.0
H10	C0F	C0G	C0H	179.8	179.8
H10	C0F	C0G	C0M	0.0	360.0
C0C	C0H	H11	C0G	180.0	179.8
H11	C0H	C0G	C0M	359.8	0.1
C15	C0M	H12	C0G	180.0	180.0
H12	C0M	C15	H1	155.2	180.2
O0B	C0O	H14	C0P	239.2	240.0
O0B	C0O	H14	H15	119.6	120.1
H14	C0O	C0P	N0S	179.0	305.0
C0P	C0O	H14	H15	240.4	240.1
H14	C0O	C0P	H16	299.1	65.0
H14	C0O	C0P	H17	59.0	185.0
O0B	C0O	H15	C0P	120.8	120.0
O0B	C0O	H15	H14	240.4	240.0
H15	C0O	C0P	N0S	59.3	185.0
C0P	C0O	H15	H14	119.6	120.0
H15	C0O	C0P	H16	179.4	305.0
H15	C0O	C0P	H17	299.2	65.0
C0O	C0P	H16	N0S	239.5	240.0
H16	C0P	C0O	H14	299.1	65.0
H16	C0P	C0O	H15	179.4	305.0
C0O	C0P	H16	H17	119.8	120.0
H16	C0P	N0S	C0V	149.8	330.1
H16	C0P	N0S	C0Z	329.7	149.8
N0S	C0P	H16	H17	240.2	239.9
C0O	C0P	H17	N0S	120.5	120.0
H17	C0P	C0O	H14	59.0	185.0
H17	C0P	C0O	H15	299.2	65.0
C0O	C0P	H17	H16	240.2	240.0
H17	C0P	N0S	C0V	29.9	210.0
H17	C0P	N0S	C0Z	209.9	29.7
N0S	C0P	H17	H16	119.8	120.0
H18	N0W	C0V	O10	0.0	0.0
C0V	N0W	H18	C0X	180.0	180.0
H18	N0W	C0X	C0Y	179.9	180.1
H18	N0W	C0X	O12	359.9	360.0
H19	C0Y	C0X	O12	0.2	0.0
C0X	C0Y	H19	C0Z	180.0	179.8
H19	C0Y	C0Z	H20	359.8	0.0
N0S	C0Z	H20	C0Y	180.0	179.8
H20	C0Z	C0Y	H19	359.8	0.0