PDB Chemical Component 1YO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1YO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NAB |
NAO |
1.120 |
1.366 |
| NAO |
CAG |
1.328 |
1.367 |
| NAO |
CAN |
1.327 |
1.366 |
| SAK |
CAN |
1.749 |
1.761 |
| SAK |
CAH |
1.830 |
1.809 |
| CAG |
NAI |
1.332 |
1.303 |
| CAA |
CAL |
1.390 |
1.508 |
| CAN |
NAJ |
1.331 |
1.313 |
| CAL |
CAE |
1.390 |
1.382 |
| CAL |
CAM |
1.389 |
1.382 |
| CAE |
CAC |
1.389 |
1.383 |
| CAM |
CAH |
1.391 |
1.507 |
| CAM |
CAF |
1.390 |
1.382 |
| CAC |
CAD |
1.389 |
1.382 |
| NAI |
NAJ |
1.131 |
1.285 |
| CAF |
CAD |
1.389 |
1.383 |
| CAA |
HAC |
1.100 |
1.090 |
| CAA |
HAA |
1.100 |
1.090 |
| CAA |
HAB |
1.100 |
1.091 |
| CAC |
HAD |
1.080 |
1.080 |
| CAD |
HAE |
1.080 |
1.080 |
| CAE |
HAF |
1.080 |
1.080 |
| CAF |
HAG |
1.080 |
1.080 |
| CAG |
HAH |
1.080 |
1.080 |
| CAH |
HAI |
1.100 |
1.090 |
| CAH |
HAJ |
1.100 |
1.091 |
| NAB |
HAL |
1.000 |
1.009 |
| NAB |
HAK |
1.000 |
1.009 |
Bond Angles for 1YO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAO |
NAB |
HAL |
109.5 |
111.0 |
| NAO |
NAB |
HAK |
109.5 |
111.0 |
| NAO |
CAG |
HAH |
126.6 |
126.4 |
| SAK |
CAH |
HAI |
108.7 |
109.5 |
| SAK |
CAH |
HAJ |
108.7 |
109.5 |
| CAG |
NAI |
NAJ |
111.4 |
110.1 |
| NAI |
CAG |
HAH |
126.5 |
126.3 |
| CAA |
CAL |
CAE |
119.5 |
120.0 |
| CAA |
CAL |
CAM |
120.0 |
120.0 |
| CAL |
CAA |
HAC |
109.5 |
109.5 |
| CAL |
CAA |
HAA |
109.5 |
109.4 |
| CAL |
CAA |
HAB |
109.5 |
109.5 |
| CAN |
NAJ |
NAI |
110.8 |
109.9 |
| CAL |
CAE |
HAF |
119.9 |
120.0 |
| CAE |
CAC |
HAD |
120.1 |
120.0 |
| CAM |
CAH |
HAI |
108.6 |
109.4 |
| CAM |
CAH |
HAJ |
108.7 |
109.4 |
| CAM |
CAF |
HAG |
120.0 |
120.0 |
| CAD |
CAC |
HAD |
120.1 |
120.0 |
| CAC |
CAD |
HAE |
120.0 |
120.0 |
| CAF |
CAD |
HAE |
119.9 |
120.0 |
| HAC |
CAA |
HAA |
109.5 |
109.5 |
| HAC |
CAA |
HAB |
109.5 |
109.5 |
| HAA |
CAA |
HAB |
109.5 |
109.5 |
| HAI |
CAH |
HAJ |
109.4 |
109.4 |
| HAL |
NAB |
HAK |
109.5 |
111.1 |
Torsion Angles for 1YO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAB |
NAO |
CAG |
HAH |
9.7 |
0.3 |
| HAL |
NAB |
NAO |
HAK |
240.0 |
236.0 |
| NAI |
CAG |
NAO |
HAH |
180.0 |
179.7 |
| CAN |
NAO |
CAG |
HAH |
180.6 |
179.9 |
| CAN |
SAK |
CAH |
HAI |
310.2 |
60.0 |
| CAN |
SAK |
CAH |
HAJ |
69.2 |
300.0 |
| CAM |
CAH |
SAK |
HAI |
239.5 |
120.0 |
| CAM |
CAH |
SAK |
HAJ |
120.5 |
240.0 |
| HAI |
CAH |
SAK |
HAJ |
241.0 |
120.0 |
| NAO |
CAG |
NAI |
HAH |
180.0 |
180.3 |
| CAN |
NAJ |
NAI |
CAG |
359.6 |
0.0 |
| CAA |
CAL |
CAE |
HAF |
11.0 |
360.0 |
| HAC |
CAA |
CAL |
HAA |
240.0 |
240.0 |
| HAC |
CAA |
CAL |
HAB |
120.0 |
120.0 |
| HAA |
CAA |
CAL |
HAB |
240.0 |
240.0 |
| CAG |
NAI |
NAJ |
CAN |
359.6 |
0.0 |
| CAA |
CAL |
CAE |
CAM |
188.7 |
180.5 |
| CAE |
CAL |
CAA |
HAC |
85.7 |
90.0 |
| CAE |
CAL |
CAA |
HAA |
205.7 |
210.0 |
| CAE |
CAL |
CAA |
HAB |
325.7 |
330.0 |
| CAL |
CAE |
CAC |
HAD |
177.9 |
180.2 |
| CAA |
CAL |
CAM |
CAE |
171.2 |
179.5 |
| CAM |
CAL |
CAA |
HAC |
274.4 |
270.5 |
| CAM |
CAL |
CAA |
HAA |
34.4 |
30.5 |
| CAM |
CAL |
CAA |
HAB |
154.4 |
150.5 |
| CAM |
CAL |
CAE |
HAF |
182.2 |
179.5 |
| CAL |
CAM |
CAH |
HAI |
309.7 |
210.0 |
| CAL |
CAM |
CAH |
HAJ |
190.7 |
329.9 |
| CAL |
CAM |
CAF |
HAG |
180.5 |
179.5 |
| CAA |
CAL |
CAE |
CAC |
190.9 |
179.9 |
| CAD |
CAC |
CAE |
HAD |
180.0 |
179.9 |
| CAE |
CAC |
CAD |
HAE |
181.2 |
180.1 |
| SAK |
CAH |
CAM |
HAI |
120.5 |
240.0 |
| SAK |
CAH |
CAM |
HAJ |
239.5 |
120.0 |
| CAA |
CAL |
CAM |
CAH |
341.7 |
0.1 |
| CAH |
CAM |
CAF |
HAG |
8.7 |
359.7 |
| HAI |
CAH |
CAM |
HAJ |
119.0 |
240.1 |
| CAA |
CAL |
CAM |
CAF |
169.8 |
180.3 |
| CAM |
CAF |
CAD |
HAE |
179.6 |
180.1 |
| CAE |
CAC |
CAD |
HAD |
180.0 |
180.1 |
| CAF |
CAD |
CAC |
HAE |
180.0 |
180.1 |
| NAJ |
NAI |
CAG |
HAH |
179.8 |
180.0 |
| CAF |
CAD |
CAC |
HAD |
181.2 |
180.1 |
| CAC |
CAD |
CAF |
HAE |
180.0 |
179.9 |
| HAC |
CAA |
CAL |
CAE |
85.7 |
90.0 |
| HAC |
CAA |
CAL |
CAM |
274.4 |
270.5 |
| CAL |
CAA |
HAC |
HAA |
120.0 |
120.0 |
| CAL |
CAA |
HAC |
HAB |
240.0 |
240.0 |
| HAA |
CAA |
HAC |
HAB |
120.0 |
120.0 |
| HAA |
CAA |
CAL |
CAE |
205.7 |
210.0 |
| HAA |
CAA |
CAL |
CAM |
34.4 |
30.5 |
| CAL |
CAA |
HAA |
HAC |
239.9 |
240.0 |
| CAL |
CAA |
HAA |
HAB |
120.0 |
120.0 |
| HAC |
CAA |
HAA |
HAB |
240.0 |
240.0 |
| HAB |
CAA |
CAL |
CAE |
325.7 |
330.0 |
| HAB |
CAA |
CAL |
CAM |
154.4 |
150.5 |
| CAL |
CAA |
HAB |
HAC |
120.1 |
120.0 |
| CAL |
CAA |
HAB |
HAA |
240.0 |
240.0 |
| HAC |
CAA |
HAB |
HAA |
120.0 |
120.0 |
| HAD |
CAC |
CAD |
HAE |
1.2 |
360.0 |
| HAE |
CAD |
CAC |
HAD |
1.2 |
360.0 |
| HAF |
CAE |
CAC |
HAD |
357.9 |
0.2 |
| HAG |
CAF |
CAD |
HAE |
359.6 |
0.1 |
| HAH |
CAG |
NAI |
NAJ |
179.8 |
180.0 |
| SAK |
CAH |
HAI |
HAJ |
118.5 |
240.0 |
| CAM |
CAH |
HAI |
HAJ |
241.5 |
119.9 |
| SAK |
CAH |
HAJ |
HAI |
241.5 |
120.0 |
| CAM |
CAH |
HAJ |
HAI |
118.5 |
240.1 |
| NAO |
NAB |
HAL |
HAK |
120.0 |
124.0 |
| NAO |
NAB |
HAK |
HAL |
240.0 |
236.0 |