PDB Chemical Component 1YG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1YG

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C11	C8	1.528	1.530
C8	C10	1.528	1.530
C8	C5	1.529	1.507
C8	C12	1.529	1.529
C5	C7	1.388	1.344
C5	O2	1.380	1.348
C7	N4	1.368	1.345
O2	C1	1.367	1.339
N4	C1	1.330	1.302
C1	C3	1.475	1.507
C3	S6	1.799	1.815
S6	C9	1.755	1.762
C22	C19	1.529	1.530
O20	C18	1.228	1.212
C9	S13	1.747	1.763
C9	C14	1.357	1.340
S13	C15	1.740	1.762
C14	N16	1.369	1.322
C18	C19	1.527	1.507
C18	N17	1.369	1.349
C15	N16	1.303	1.296
C15	N17	1.382	1.392
C19	C21	1.524	1.507
C24	C21	1.391	1.382
C24	C26	1.387	1.383
C21	C23	1.389	1.383
C26	C27	1.382	1.382
C23	C25	1.387	1.382
C27	C25	1.381	1.382
C7	H1	1.080	1.081
C10	H2	1.100	1.090
C10	H3	1.100	1.090
C10	H4	1.100	1.091
C11	H5	1.100	1.090
C11	H6	1.100	1.089
C11	H7	1.100	1.090
C12	H8	1.100	1.089
C12	H9	1.100	1.090
C12	H10	1.101	1.090
C14	H11	1.080	1.080
C3	H12	1.100	1.090
C3	H13	1.100	1.090
N17	H14	1.000	0.970
C19	H15	1.100	1.090
C22	H16	1.100	1.090
C22	H17	1.100	1.089
C22	H18	1.100	1.091
C24	H19	1.080	1.080
C26	H20	1.080	1.080
C27	H21	1.080	1.080
C25	H22	1.080	1.080
C23	H23	1.080	1.080

Bond Angles for 1YG

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C11	C8	C12	109.3	109.5
C10	C8	C12	108.5	109.5
C8	C10	H2	109.5	109.5
C8	C10	H3	109.5	109.4
C8	C10	H4	109.5	109.5
C8	C5	O2	121.1	126.5
C8	C12	H8	109.5	109.5
C8	C12	H9	109.5	109.4
C8	C12	H10	109.4	109.5
C7	C5	O2	107.0	107.0
C5	C7	N4	109.7	107.7
C5	C7	H1	125.2	126.1
C5	O2	C1	105.0	107.8
C7	N4	C1	105.0	108.7
N4	C7	H1	125.1	126.2
O2	C1	C3	119.6	125.6
N4	C1	C3	127.0	125.6
C1	C3	S6	106.2	109.5
C1	C3	H12	110.3	109.5
C1	C3	H13	110.3	109.5
S6	C3	H12	110.3	109.5
S6	C3	H13	110.3	109.4
S6	C9	S13	117.9	125.9
C22	C19	C21	113.9	109.5
C22	C19	H15	108.2	109.4
O20	C18	C19	121.8	120.0
C14	C9	S13	109.2	108.2
C9	S13	C15	88.2	89.9
C9	C14	N16	117.0	115.6
C9	C14	H11	121.5	122.2
C14	N16	C15	109.7	117.1
N16	C14	H11	121.5	122.2
C18	C19	C21	108.5	109.4
C18	C19	H15	108.2	109.5
C18	N17	H14	117.0	120.0
N16	C15	N17	119.4	125.4
C15	N17	H14	117.0	120.1
C19	C21	C23	119.6	119.9
C21	C19	H15	108.2	109.6
C24	C21	C23	118.5	120.0
C24	C26	C27	120.1	120.0
C26	C24	H19	119.6	120.0
C24	C26	H20	119.9	120.0
C21	C23	C25	120.7	119.9
C21	C23	H23	119.7	120.0
C26	C27	C25	119.7	120.0
C27	C26	H20	120.0	120.0
C26	C27	H21	120.2	120.0
C23	C25	H22	119.9	119.9
C25	C27	H21	120.2	120.0
C27	C25	H22	119.9	120.0
H2	C10	H3	109.5	109.5
H2	C10	H4	109.4	109.4
H3	C10	H4	109.5	109.5
H5	C11	H6	109.5	109.5
H5	C11	H7	109.5	109.4
H6	C11	H7	109.5	109.5
H8	C12	H9	109.5	109.5
H8	C12	H10	109.5	109.5
H9	C12	H10	109.5	109.4
H12	C3	H13	109.4	109.4
H16	C22	H17	109.5	109.5
H16	C22	H18	109.4	109.5
H17	C22	H18	109.5	109.4

Torsion Angles for 1YG

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C10	C8	C11	C12	118.2	239.9
C11	C8	C10	H2	180.0	300.0
C11	C8	C10	H3	300.0	60.1
C11	C8	C10	H4	60.0	180.0
C11	C8	C5	O2	75.7	0.3
C11	C8	C12	H8	180.0	300.0
C11	C8	C12	H9	300.0	60.0
C11	C8	C12	H10	60.0	179.9
C11	C8	C10	C12	241.2	120.1
C10	C8	C5	O2	195.6	240.3
C10	C8	C12	H8	61.6	60.1
C10	C8	C12	H9	181.6	180.0
C10	C8	C12	H10	301.6	300.0
H2	C10	C8	H3	240.0	239.9
H2	C10	C8	H4	120.0	120.0
H3	C10	C8	H4	240.0	240.0
C7	C5	C8	O2	177.1	179.7
C8	C5	C7	N4	183.5	180.3
C8	C5	C7	H1	3.5	0.3
C8	C5	O2	C1	176.6	179.7
C12	C8	C10	H2	298.7	179.9
C12	C8	C10	H3	58.8	300.0
C12	C8	C10	H4	178.8	60.0
C12	C8	C5	O2	315.4	120.4
H8	C12	C8	H9	240.0	240.0
H8	C12	C8	H10	120.0	120.1
H9	C12	C8	H10	240.0	240.1
C8	C5	C7	O2	182.6	180.3
C7	C5	O2	C1	358.8	0.0
C5	C7	N4	C1	359.7	0.0
N4	C7	C5	H1	180.0	180.0
O2	C5	C7	N4	1.0	360.0
O2	C5	C7	H1	180.9	180.0
C5	O2	C1	C3	185.6	180.0
N4	C7	C5	O2	1.0	360.0
C5	C7	N4	H1	180.0	180.0
C7	N4	C1	C3	174.6	180.0
N4	C1	O2	C3	175.5	180.0
O2	C1	C3	S6	105.0	270.0
O2	C1	C3	H12	224.6	30.0
O2	C1	C3	H13	345.5	150.0
C5	O2	C1	N4	1.1	360.0
C1	N4	C7	H1	179.7	180.0
O2	C1	N4	C3	184.9	180.0
N4	C1	C3	S6	290.2	90.0
N4	C1	C3	H12	49.8	210.1
N4	C1	C3	H13	170.7	330.0
S6	C3	C1	H12	240.5	239.9
S6	C3	C1	H13	119.5	120.0
H12	C3	C1	H13	239.0	240.0
C1	C3	S6	H12	119.5	120.1
C1	C3	S6	H13	240.5	240.0
C3	S6	C9	S13	78.5	0.1
H12	C3	S6	H13	121.0	119.9
C14	C9	S6	S13	175.1	179.7
S6	C9	S13	C15	175.9	179.7
S6	C9	C14	N16	186.1	180.3
S6	C9	C14	H11	6.2	0.2
C18	C19	C22	C21	121.8	120.0
C18	C19	C22	H15	242.1	240.0
C22	C19	C21	C23	221.7	240.0
C21	C19	C22	H15	120.4	120.1
O20	C18	C19	C21	75.3	359.9
O20	C18	C19	H15	192.5	120.0
O20	C18	N17	H14	179.8	180.1
S13	C9	C14	N16	1.6	0.0
S13	C9	C14	H11	181.6	179.9
S6	C9	C14	S13	184.6	180.3
C14	C9	S13	C15	359.6	360.0
C9	C14	N16	C15	357.7	0.0
N16	C14	C9	H11	180.0	180.1
S13	C15	N17	H14	174.4	359.9
N16	C14	C9	S13	1.6	0.0
C9	C14	N16	H11	180.0	179.9
C14	N16	C15	N17	188.8	180.0
C22	C19	C18	C21	235.0	240.0
C22	C19	C18	H15	117.8	119.9
C19	C18	N17	H14	2.4	0.1
C18	C19	C21	C23	99.2	120.0
C21	C19	C18	H15	242.8	239.9
C15	N17	C18	H14	180.0	179.9
C9	S13	C15	N16	359.0	0.0
C15	N16	C14	H11	177.7	180.1
N16	C15	N17	H14	346.9	179.9
C9	S13	C15	N17	171.8	180.0
C18	N17	C15	H14	180.0	180.1
C22	C19	C21	H15	239.7	240.0
C18	C19	C21	H15	117.2	120.0
C24	C21	C19	C23	177.9	180.3
C19	C21	C23	C25	176.2	179.8
C19	C21	C23	H23	356.2	359.9
C19	C21	C24	C23	182.1	179.7
C24	C21	C19	H15	159.9	180.3
C24	C21	C23	C25	358.3	359.6
C24	C21	C23	H23	178.3	179.7
C26	C24	C21	C23	2.2	0.2
C24	C26	C27	C25	359.0	359.9
C27	C26	C24	H20	180.0	180.1
C24	C26	C27	H21	179.0	179.9
C23	C21	C19	H15	342.0	0.0
C21	C23	C25	H22	179.9	180.3
C27	C26	C24	H19	179.1	180.1
C24	C26	C27	H20	180.0	179.9
C25	C27	C26	H21	180.0	179.9
C26	C27	C25	H22	181.5	180.0
C21	C23	C25	H23	180.0	180.1
C23	C25	C27	H21	181.5	179.9
C27	C25	C23	H22	180.0	180.1
C21	C23	C25	C27	359.9	0.4
C25	C27	C26	H20	179.0	180.0
C26	C27	C25	H21	180.0	180.1
C23	C25	C27	H22	180.0	179.9
H1	C7	C5	O2	180.9	180.0
C5	C7	H1	N4	180.0	180.0
H1	C7	N4	C1	179.7	180.0
H2	C10	C8	C12	298.7	179.9
C8	C10	H2	H3	120.0	120.0
C8	C10	H2	H4	240.0	240.0
H3	C10	H2	H4	120.0	120.0
H3	C10	C8	C12	58.8	300.0
C8	C10	H3	H2	240.0	239.9
C8	C10	H3	H4	120.0	120.0
H2	C10	H3	H4	240.0	240.0
H4	C10	C8	C12	178.8	60.0
C8	C10	H4	H2	120.0	120.0
C8	C10	H4	H3	240.0	240.1
H2	C10	H4	H3	120.0	120.0
H5	C11	C8	C12	61.8	180.0
H6	C11	H5	H7	120.0	120.0
H6	C11	C8	C12	181.8	300.0
H5	C11	H6	H7	240.0	240.0
H7	C11	C8	C12	301.8	60.0
H5	C11	H7	H6	120.0	120.0
C8	C12	H8	H9	120.0	120.0
C8	C12	H8	H10	240.0	239.9
H9	C12	H8	H10	120.0	119.9
C8	C12	H9	H8	240.0	240.0
C8	C12	H9	H10	120.0	120.0
H8	C12	H9	H10	240.0	240.0
C8	C12	H10	H8	120.0	120.1
C8	C12	H10	H9	240.0	240.0
H8	C12	H10	H9	120.0	120.0
H11	C14	C9	S13	181.6	179.9
C9	C14	H11	N16	180.0	180.1
H11	C14	N16	C15	177.7	180.1
C1	C3	H12	S6	243.0	240.0
C1	C3	H12	H13	121.5	120.0
S6	C3	H12	H13	238.5	240.1
C1	C3	H13	S6	117.0	120.0
C1	C3	H13	H12	238.5	240.0
S6	C3	H13	H12	121.5	120.0
C22	C19	H15	C21	123.8	120.0
C18	C19	H15	C21	242.7	240.0
H15	C19	C21	C23	342.0	0.0
H16	C22	C19	C21	58.2	60.0
H16	C22	C19	H15	297.8	299.9
H17	C22	H16	H18	120.0	120.0
H17	C22	C19	C21	178.2	180.1
H17	C22	C19	H15	57.9	60.0
H16	C22	H17	H18	240.0	240.0
H18	C22	C19	C21	298.2	300.0
H18	C22	C19	H15	177.9	179.9
H16	C22	H18	H17	120.0	120.0
H19	C24	C21	C23	182.2	180.2
H19	C24	C26	C27	179.1	180.1
H19	C24	C26	H20	359.1	359.9
C24	C26	H20	C27	180.0	180.1
H20	C26	C24	H19	359.1	359.9
H20	C26	C27	C25	179.0	180.0
H20	C26	C27	H21	359.0	0.1
C26	C27	H21	C25	180.0	179.9
H21	C27	C26	H20	359.0	0.1
H21	C27	C25	H22	1.5	360.0
H22	C25	C27	H21	1.5	360.0
C21	C23	H23	C25	180.0	179.9
H23	C23	C25	H22	359.9	0.2