PDB Chemical Component 1X6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1X6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.480 |
1.469 |
| CA |
C |
1.538 |
1.507 |
| CA |
CB |
1.525 |
1.530 |
| C |
O |
1.236 |
1.208 |
| CB |
OG |
1.425 |
1.429 |
| OG |
C7 |
1.328 |
1.349 |
| C7 |
O8 |
1.229 |
1.216 |
| C7 |
C6 |
1.469 |
1.412 |
| C6 |
C5 |
1.323 |
1.350 |
| C5 |
N4 |
1.325 |
1.365 |
| C |
OXT |
1.330 |
1.342 |
| N |
HN1 |
1.000 |
1.008 |
| N |
HN2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB1C |
1.100 |
1.090 |
| CB |
HB2C |
1.100 |
1.089 |
| C6 |
H6 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.081 |
| N4 |
H41N |
1.000 |
0.970 |
| N4 |
H42N |
1.000 |
0.971 |
| OXT |
HXT |
0.951 |
0.967 |
Bond Angles for 1X6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
115.1 |
109.5 |
| N |
CA |
CB |
110.8 |
109.5 |
| CA |
N |
HN1 |
109.5 |
111.0 |
| CA |
N |
HN2 |
109.4 |
111.0 |
| N |
CA |
HA |
104.4 |
109.4 |
| C |
CA |
CB |
109.3 |
109.5 |
| CA |
C |
O |
120.3 |
120.0 |
| CA |
C |
OXT |
117.8 |
120.0 |
| C |
CA |
HA |
106.2 |
109.5 |
| CA |
CB |
OG |
111.5 |
109.5 |
| CB |
CA |
HA |
110.9 |
109.5 |
| CA |
CB |
HB1C |
108.8 |
109.4 |
| CA |
CB |
HB2C |
108.8 |
109.4 |
| O |
C |
OXT |
121.9 |
120.0 |
| CB |
OG |
C7 |
131.0 |
116.9 |
| OG |
CB |
HB1C |
108.8 |
109.5 |
| OG |
CB |
HB2C |
108.8 |
109.5 |
| OG |
C7 |
O8 |
111.0 |
120.1 |
| OG |
C7 |
C6 |
129.9 |
120.0 |
| O8 |
C7 |
C6 |
118.7 |
120.0 |
| C7 |
C6 |
C5 |
115.9 |
120.0 |
| C7 |
C6 |
H6 |
122.1 |
120.0 |
| C6 |
C5 |
N4 |
121.4 |
120.0 |
| C5 |
C6 |
H6 |
122.0 |
120.0 |
| C6 |
C5 |
H5 |
119.3 |
120.0 |
| N4 |
C5 |
H5 |
119.3 |
120.0 |
| C5 |
N4 |
H41N |
109.5 |
120.0 |
| C5 |
N4 |
H42N |
109.5 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| HN1 |
N |
HN2 |
109.5 |
111.0 |
| HB1C |
CB |
HB2C |
110.1 |
109.5 |
| H41N |
N4 |
H42N |
109.5 |
120.0 |
Torsion Angles for 1X6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
124.6 |
120.1 |
| N |
CA |
C |
O |
172.4 |
340.0 |
| N |
CA |
C |
OXT |
352.5 |
160.0 |
| C |
CA |
N |
HA |
244.0 |
240.0 |
| N |
CA |
CB |
OG |
296.0 |
295.0 |
| CB |
CA |
N |
HA |
119.4 |
120.0 |
| N |
CA |
CB |
HB1C |
56.0 |
55.0 |
| N |
CA |
CB |
HB2C |
176.0 |
175.0 |
| HN1 |
N |
CA |
HN2 |
240.0 |
236.0 |
| N |
CA |
C |
CB |
234.6 |
240.0 |
| C |
CA |
N |
HN1 |
180.0 |
296.1 |
| C |
CA |
N |
HN2 |
300.0 |
60.0 |
| N |
CA |
C |
HA |
115.0 |
119.9 |
| C |
CA |
CB |
OG |
168.2 |
175.0 |
| CB |
CA |
C |
HA |
240.4 |
240.0 |
| C |
CA |
CB |
HB1C |
288.2 |
295.0 |
| C |
CA |
CB |
HB2C |
48.1 |
54.9 |
| O |
C |
CA |
OXT |
179.9 |
179.9 |
| CA |
C |
OXT |
HXT |
179.9 |
180.0 |
| N |
CA |
CB |
C |
127.9 |
120.0 |
| CB |
CA |
N |
HN1 |
55.3 |
176.0 |
| CB |
CA |
N |
HN2 |
175.4 |
300.0 |
| N |
CA |
CB |
HA |
244.5 |
240.0 |
| CB |
CA |
C |
O |
297.8 |
100.0 |
| CB |
CA |
C |
OXT |
117.9 |
280.1 |
| C |
CA |
CB |
HA |
116.7 |
120.0 |
| CA |
CB |
OG |
C7 |
87.0 |
180.0 |
| OG |
CB |
CA |
HB1C |
240.0 |
240.0 |
| OG |
CB |
CA |
HB2C |
120.0 |
120.0 |
| HB1C |
CB |
CA |
HB2C |
240.0 |
240.0 |
| O |
C |
CA |
CB |
297.8 |
100.0 |
| CA |
C |
O |
OXT |
180.1 |
180.1 |
| O |
C |
CA |
HA |
57.4 |
220.0 |
| O |
C |
OXT |
HXT |
360.0 |
0.1 |
| OG |
CB |
CA |
HA |
51.5 |
55.0 |
| CA |
CB |
OG |
HB1C |
120.0 |
119.9 |
| CA |
CB |
OG |
HB2C |
240.0 |
240.0 |
| CB |
OG |
C7 |
O8 |
353.0 |
0.0 |
| CB |
OG |
C7 |
C6 |
166.0 |
180.0 |
| HB1C |
CB |
OG |
HB2C |
120.0 |
120.1 |
| C7 |
OG |
CB |
HB1C |
327.0 |
60.1 |
| C7 |
OG |
CB |
HB2C |
207.0 |
300.0 |
| O8 |
C7 |
OG |
C6 |
187.0 |
180.0 |
| OG |
C7 |
C6 |
C5 |
194.8 |
180.0 |
| OG |
C7 |
C6 |
H6 |
14.8 |
0.0 |
| OG |
C7 |
O8 |
C6 |
173.9 |
180.0 |
| O8 |
C7 |
C6 |
C5 |
7.3 |
360.0 |
| O8 |
C7 |
C6 |
H6 |
187.3 |
180.0 |
| OG |
C7 |
C6 |
O8 |
187.5 |
180.0 |
| C7 |
C6 |
C5 |
N4 |
179.4 |
180.0 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H5 |
359.4 |
359.9 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| N4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| C6 |
C5 |
N4 |
H41N |
180.0 |
359.9 |
| C6 |
C5 |
N4 |
H42N |
300.0 |
180.0 |
| N4 |
C5 |
C6 |
H6 |
359.4 |
0.0 |
| C6 |
C5 |
N4 |
H5 |
180.0 |
179.9 |
| H41N |
N4 |
C5 |
H42N |
240.0 |
179.9 |
| OXT |
C |
CA |
CB |
117.9 |
280.1 |
| CA |
C |
OXT |
O |
179.9 |
179.9 |
| OXT |
C |
CA |
HA |
237.5 |
40.1 |
| HN1 |
N |
CA |
C |
180.0 |
296.1 |
| HN1 |
N |
CA |
CB |
55.3 |
176.0 |
| CA |
N |
HN1 |
HN2 |
120.0 |
124.0 |
| HN1 |
N |
CA |
HA |
295.9 |
56.0 |
| HN2 |
N |
CA |
C |
300.0 |
60.0 |
| HN2 |
N |
CA |
CB |
175.4 |
300.0 |
| CA |
N |
HN2 |
HN1 |
240.0 |
236.0 |
| HN2 |
N |
CA |
HA |
56.0 |
180.0 |
| N |
CA |
HA |
C |
238.0 |
240.0 |
| N |
CA |
HA |
CB |
119.4 |
120.0 |
| HA |
CA |
N |
HN1 |
295.9 |
56.0 |
| HA |
CA |
N |
HN2 |
56.0 |
180.0 |
| C |
CA |
HA |
CB |
241.4 |
240.0 |
| HA |
CA |
C |
O |
57.4 |
220.0 |
| HA |
CA |
C |
OXT |
237.5 |
40.1 |
| HA |
CA |
CB |
OG |
51.5 |
55.0 |
| HA |
CA |
CB |
HB1C |
171.5 |
175.0 |
| HA |
CA |
CB |
HB2C |
291.5 |
294.9 |
| CA |
CB |
HB1C |
OG |
238.3 |
240.0 |
| HB1C |
CB |
CA |
HA |
171.5 |
175.0 |
| CA |
CB |
HB1C |
HB2C |
119.1 |
119.9 |
| HB1C |
CB |
OG |
C7 |
327.0 |
60.1 |
| OG |
CB |
HB1C |
HB2C |
240.8 |
239.9 |
| CA |
CB |
HB2C |
OG |
121.7 |
120.0 |
| HB2C |
CB |
CA |
HA |
291.5 |
294.9 |
| CA |
CB |
HB2C |
HB1C |
240.8 |
240.1 |
| HB2C |
CB |
OG |
C7 |
207.0 |
300.0 |
| OG |
CB |
HB2C |
HB1C |
119.2 |
120.1 |
| C7 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
N4 |
359.4 |
0.0 |
| H6 |
C6 |
C5 |
H5 |
179.4 |
179.9 |
| C6 |
C5 |
H5 |
N4 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
H6 |
179.4 |
179.9 |
| H5 |
C5 |
N4 |
H41N |
360.0 |
180.0 |
| H5 |
C5 |
N4 |
H42N |
120.0 |
0.1 |
| H41N |
N4 |
C5 |
H5 |
360.0 |
180.0 |
| C5 |
N4 |
H41N |
H42N |
120.0 |
180.1 |
| H42N |
N4 |
C5 |
H5 |
120.0 |
0.1 |
| C5 |
N4 |
H42N |
H41N |
240.0 |
179.9 |