PDB Chemical Component 1WA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1WA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| P |
OP3 |
1.570 |
1.610 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| OP2 |
P |
1.446 |
1.480 |
| O5' |
P |
1.664 |
1.611 |
| P |
OP1 |
1.503 |
1.610 |
| C2 |
N1 |
1.338 |
1.326 |
| N1 |
C6 |
1.362 |
1.326 |
| N2 |
C2 |
1.362 |
1.366 |
| C2 |
N3 |
1.347 |
1.359 |
| N2 |
HN2 |
1.000 |
0.970 |
| N2 |
HN2A |
1.000 |
0.970 |
| N3 |
C4 |
1.354 |
1.386 |
| N3 |
HN3 |
1.000 |
0.970 |
| C4 |
N5 |
1.353 |
1.345 |
| C4 |
N9 |
1.384 |
1.321 |
| C6 |
N5 |
1.328 |
1.341 |
| N5 |
C7 |
1.397 |
1.349 |
| C6 |
O6 |
1.297 |
1.349 |
| C7 |
C8 |
1.250 |
1.355 |
| C7 |
H7 |
1.080 |
1.080 |
| N9 |
C8 |
1.318 |
1.339 |
| C8 |
H8 |
1.080 |
1.080 |
| N9 |
C1' |
1.419 |
1.465 |
| C2' |
C1' |
1.503 |
1.545 |
| C1' |
O4' |
1.440 |
1.444 |
| C1' |
H1' |
1.100 |
1.091 |
| C2' |
C3' |
1.564 |
1.544 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.100 |
1.090 |
| O3' |
C3' |
1.412 |
1.429 |
| C3' |
C4' |
1.500 |
1.545 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C4' |
O4' |
1.393 |
1.444 |
| C4' |
C5' |
1.523 |
1.530 |
| C4' |
H4' |
1.100 |
1.090 |
| O5' |
C5' |
1.400 |
1.429 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| OP1 |
HOP1 |
0.950 |
0.967 |
| O6 |
HO6 |
0.950 |
0.966 |
Bond Angles for 1WA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| O5' |
P |
OP1 |
116.8 |
109.4 |
| P |
OP1 |
HOP1 |
109.5 |
114.0 |
| C2 |
N1 |
C6 |
120.9 |
121.0 |
| N1 |
C6 |
N5 |
122.0 |
120.9 |
| N1 |
C6 |
O6 |
109.6 |
119.5 |
| N2 |
C2 |
N3 |
124.0 |
120.0 |
| C2 |
N3 |
C4 |
120.5 |
119.0 |
| C2 |
N3 |
HN3 |
119.7 |
120.5 |
| HN2 |
N2 |
HN2A |
109.5 |
120.0 |
| C4 |
N3 |
HN3 |
119.8 |
120.5 |
| N3 |
C4 |
N5 |
122.0 |
119.1 |
| N3 |
C4 |
N9 |
131.2 |
132.3 |
| N5 |
C4 |
N9 |
106.7 |
108.6 |
| C4 |
N5 |
C7 |
105.1 |
107.7 |
| C4 |
N9 |
C8 |
106.9 |
108.6 |
| C4 |
N9 |
C1' |
123.8 |
125.7 |
| C6 |
N5 |
C7 |
138.3 |
132.3 |
| N5 |
C7 |
C8 |
109.5 |
107.3 |
| N5 |
C7 |
H7 |
125.3 |
126.4 |
| C6 |
O6 |
HO6 |
109.5 |
114.0 |
| C8 |
C7 |
H7 |
125.2 |
126.4 |
| C7 |
C8 |
H8 |
124.4 |
126.2 |
| N9 |
C8 |
H8 |
124.4 |
126.1 |
| N9 |
C1' |
O4' |
106.6 |
110.4 |
| N9 |
C1' |
H1' |
114.1 |
110.3 |
| C2' |
C1' |
O4' |
103.1 |
104.8 |
| C2' |
C1' |
H1' |
112.6 |
110.5 |
| O4' |
C1' |
H1' |
113.7 |
110.3 |
| C1' |
O4' |
C4' |
116.4 |
105.3 |
| C3' |
C2' |
H2' |
110.6 |
110.6 |
| C3' |
C2' |
H2'A |
110.6 |
110.5 |
| C2' |
C3' |
C4' |
107.2 |
104.1 |
| C2' |
C3' |
H3' |
107.7 |
110.5 |
| H2' |
C2' |
H2'A |
109.5 |
110.6 |
| O3' |
C3' |
C4' |
110.6 |
110.5 |
| O3' |
C3' |
H3' |
109.7 |
110.5 |
| C4' |
C3' |
H3' |
108.4 |
110.5 |
| C3' |
C4' |
O4' |
101.3 |
104.8 |
| C3' |
C4' |
C5' |
124.8 |
110.4 |
| C3' |
C4' |
H4' |
107.8 |
110.4 |
| O4' |
C4' |
C5' |
105.4 |
110.4 |
| O4' |
C4' |
H4' |
109.2 |
110.4 |
| C5' |
C4' |
H4' |
107.5 |
110.4 |
| C4' |
C5' |
H5' |
108.6 |
109.5 |
| C4' |
C5' |
H5'A |
108.7 |
109.5 |
| O5' |
C5' |
H5' |
108.7 |
109.4 |
| O5' |
C5' |
H5'A |
108.6 |
109.5 |
| H5' |
C5' |
H5'A |
109.5 |
109.5 |
Torsion Angles for 1WA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
OP3 |
HOP3 |
360.0 |
180.0 |
| OP2 |
P |
OP1 |
HOP1 |
360.0 |
300.0 |
| O5' |
P |
OP3 |
HOP3 |
246.4 |
300.0 |
| O5' |
P |
OP1 |
HOP1 |
136.8 |
180.0 |
| OP1 |
P |
OP3 |
HOP3 |
124.0 |
60.0 |
| C2 |
N1 |
C6 |
N5 |
353.0 |
0.1 |
| C2 |
N1 |
C6 |
O6 |
188.2 |
180.0 |
| N1 |
C6 |
N5 |
C7 |
182.7 |
180.0 |
| N1 |
C6 |
O6 |
HO6 |
0.0 |
360.0 |
| N2 |
C2 |
N1 |
C6 |
185.8 |
180.0 |
| N2 |
C2 |
N3 |
C4 |
179.1 |
179.9 |
| N2 |
C2 |
N3 |
HN3 |
359.1 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
357.9 |
0.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
N5 |
355.7 |
360.0 |
| C2 |
N3 |
C4 |
N9 |
171.3 |
180.1 |
| HN2 |
N2 |
C2 |
N3 |
188.4 |
180.0 |
| HN2A |
N2 |
C2 |
N3 |
308.4 |
0.0 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.0 |
| N5 |
C4 |
N3 |
N9 |
184.4 |
179.9 |
| N3 |
C4 |
N5 |
C7 |
180.6 |
180.0 |
| N3 |
C4 |
N9 |
C8 |
176.8 |
180.0 |
| N3 |
C4 |
N9 |
C1' |
5.8 |
359.9 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
179.9 |
| HN3 |
N3 |
C4 |
N5 |
175.7 |
179.9 |
| HN3 |
N3 |
C4 |
N9 |
351.3 |
0.0 |
| N1 |
C6 |
N5 |
C4 |
10.0 |
359.9 |
| N5 |
C4 |
N3 |
HN3 |
175.7 |
179.9 |
| N3 |
C4 |
N5 |
N9 |
176.6 |
180.1 |
| N5 |
C4 |
N9 |
C8 |
352.9 |
0.1 |
| N5 |
C4 |
N9 |
C1' |
181.9 |
180.0 |
| C6 |
N5 |
C4 |
C7 |
175.0 |
180.1 |
| C4 |
N5 |
C7 |
C8 |
0.6 |
0.1 |
| C4 |
N5 |
C7 |
H7 |
180.6 |
180.0 |
| N9 |
C4 |
N3 |
HN3 |
351.3 |
0.0 |
| N3 |
C4 |
N9 |
N5 |
183.9 |
179.9 |
| N9 |
C4 |
N5 |
C7 |
4.0 |
359.9 |
| C4 |
N9 |
C8 |
H8 |
187.7 |
180.0 |
| C4 |
N9 |
C1' |
O4' |
203.3 |
233.6 |
| C4 |
N9 |
C1' |
H1' |
329.6 |
355.8 |
| N1 |
C6 |
N5 |
O6 |
197.9 |
179.9 |
| C6 |
N5 |
C4 |
N9 |
179.0 |
180.0 |
| C4 |
N5 |
C6 |
C7 |
187.3 |
179.9 |
| C6 |
N5 |
C7 |
C8 |
187.3 |
179.9 |
| C6 |
N5 |
C7 |
H7 |
7.4 |
359.9 |
| C7 |
N5 |
C4 |
N9 |
4.0 |
359.9 |
| C8 |
C7 |
N5 |
H7 |
180.0 |
180.0 |
| N5 |
C7 |
C8 |
H8 |
174.8 |
179.9 |
| N1 |
C6 |
O6 |
N5 |
163.9 |
180.1 |
| O6 |
C6 |
N5 |
C7 |
344.8 |
0.1 |
| C4 |
N9 |
C8 |
C7 |
7.7 |
359.9 |
| N5 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| N9 |
C8 |
C7 |
H8 |
180.0 |
180.1 |
| N5 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
H8 |
354.7 |
360.0 |
| C4 |
N9 |
C8 |
C1' |
189.5 |
179.9 |
| N9 |
C8 |
C7 |
H7 |
174.7 |
180.0 |
| C7 |
C8 |
N9 |
H8 |
180.0 |
179.9 |
| H8 |
C8 |
C7 |
H7 |
354.7 |
360.0 |
| C4 |
N9 |
C1' |
C8 |
169.0 |
180.1 |
| C1' |
N9 |
C8 |
H8 |
358.2 |
0.1 |
| C2' |
C1' |
N9 |
O4' |
250.7 |
244.6 |
| C2' |
C1' |
N9 |
H1' |
124.4 |
122.4 |
| O4' |
C1' |
N9 |
H1' |
233.7 |
237.8 |
| N9 |
C1' |
O4' |
C4' |
226.1 |
200.7 |
| N9 |
C1' |
C2' |
O4' |
111.8 |
118.9 |
| N9 |
C1' |
C2' |
H1' |
234.7 |
237.7 |
| O4' |
C1' |
C2' |
H1' |
122.9 |
118.8 |
| C2' |
C1' |
O4' |
C4' |
337.4 |
319.5 |
| N9 |
C1' |
O4' |
H1' |
126.6 |
122.2 |
| C2' |
C1' |
O4' |
H1' |
237.8 |
241.1 |
| C3' |
C4' |
O4' |
C1' |
28.7 |
40.5 |
| C1' |
O4' |
C4' |
C5' |
160.0 |
159.3 |
| C1' |
O4' |
C4' |
H4' |
275.2 |
281.7 |
| N9 |
C1' |
H1' |
O4' |
237.5 |
237.7 |
| C2' |
C1' |
H1' |
O4' |
116.8 |
115.4 |
| H1' |
C1' |
O4' |
C4' |
99.6 |
78.4 |
| C3' |
C2' |
C1' |
O4' |
5.7 |
23.9 |
| C3' |
C2' |
C1' |
H1' |
242.8 |
265.1 |
| H2' |
C2' |
C3' |
H2'A |
121.4 |
122.7 |
| O3' |
C3' |
C2' |
C4' |
122.2 |
118.7 |
| O3' |
C3' |
C2' |
H3' |
238.7 |
237.3 |
| C4' |
C3' |
C2' |
H3' |
116.5 |
118.6 |
| C2' |
C3' |
C4' |
O4' |
337.9 |
336.0 |
| C2' |
C3' |
C4' |
C5' |
220.0 |
217.2 |
| C2' |
C3' |
C4' |
H4' |
92.6 |
94.8 |
| H2' |
C2' |
C1' |
O4' |
125.0 |
142.7 |
| H2' |
C2' |
C1' |
H1' |
2.0 |
23.8 |
| C3' |
C2' |
H2' |
H2'A |
237.9 |
237.3 |
| H2' |
C2' |
C3' |
C4' |
250.9 |
241.4 |
| H2' |
C2' |
C3' |
H3' |
134.4 |
122.7 |
| H2'A |
C2' |
C1' |
O4' |
246.4 |
265.3 |
| H2'A |
C2' |
C1' |
H1' |
123.5 |
146.5 |
| C3' |
C2' |
H2'A |
H2' |
122.1 |
122.7 |
| H2'A |
C2' |
C3' |
C4' |
129.5 |
118.6 |
| H2'A |
C2' |
C3' |
H3' |
13.0 |
0.0 |
| O3' |
C3' |
C2' |
H2' |
13.1 |
0.0 |
| O3' |
C3' |
C2' |
H2'A |
251.6 |
237.3 |
| C2' |
C3' |
O3' |
C4' |
239.7 |
245.3 |
| C2' |
C3' |
O3' |
H3' |
120.2 |
122.7 |
| C4' |
C3' |
O3' |
H3' |
240.5 |
237.4 |
| O3' |
C3' |
C4' |
O4' |
214.2 |
217.3 |
| O3' |
C3' |
C4' |
C5' |
96.2 |
98.5 |
| O3' |
C3' |
C4' |
H4' |
328.8 |
336.1 |
| C1' |
O4' |
C4' |
C3' |
28.7 |
40.5 |
| C4' |
C3' |
C2' |
H2' |
250.9 |
241.4 |
| C4' |
C3' |
C2' |
H2'A |
129.5 |
118.6 |
| C2' |
C3' |
C4' |
H3' |
244.0 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
120.2 |
122.6 |
| O4' |
C4' |
C3' |
C5' |
118.0 |
118.8 |
| O4' |
C4' |
C3' |
H4' |
245.4 |
241.2 |
| C5' |
C4' |
C3' |
H4' |
127.4 |
122.4 |
| C3' |
C4' |
C5' |
H5' |
166.0 |
304.9 |
| C3' |
C4' |
C5' |
H5'A |
285.0 |
65.0 |
| H3' |
C3' |
C2' |
H2' |
134.4 |
122.7 |
| H3' |
C3' |
C2' |
H2'A |
13.0 |
0.0 |
| C2' |
C3' |
H3' |
C4' |
115.7 |
114.7 |
| O3' |
C3' |
H3' |
C4' |
239.2 |
237.4 |
| H3' |
C3' |
C4' |
O4' |
94.0 |
94.7 |
| H3' |
C3' |
C4' |
C5' |
336.0 |
335.9 |
| H3' |
C3' |
C4' |
H4' |
208.6 |
213.5 |
| HO3' |
O3' |
C3' |
C4' |
300.3 |
176.1 |
| HO3' |
O3' |
C3' |
H3' |
59.8 |
298.7 |
| C4' |
O4' |
C1' |
H1' |
99.6 |
78.4 |
| O4' |
C4' |
C3' |
H3' |
94.0 |
94.7 |
| C3' |
C4' |
O4' |
C5' |
228.8 |
241.2 |
| C3' |
C4' |
O4' |
H4' |
113.5 |
118.8 |
| C5' |
C4' |
O4' |
H4' |
244.8 |
237.6 |
| O4' |
C4' |
C5' |
H5' |
50.0 |
189.6 |
| O4' |
C4' |
C5' |
H5'A |
169.0 |
309.6 |
| C5' |
C4' |
C3' |
H3' |
336.0 |
335.9 |
| C3' |
C4' |
C5' |
O4' |
116.1 |
115.3 |
| C3' |
C4' |
C5' |
H4' |
232.5 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
116.4 |
122.3 |
| O5' |
C5' |
C4' |
H5' |
239.5 |
240.1 |
| O5' |
C5' |
C4' |
H5'A |
120.5 |
120.0 |
| H5' |
C5' |
C4' |
H5'A |
241.0 |
240.0 |
| H4' |
C4' |
C3' |
H3' |
208.6 |
213.5 |
| C3' |
C4' |
H4' |
O4' |
250.8 |
244.7 |
| C3' |
C4' |
H4' |
C5' |
136.9 |
122.3 |
| O4' |
C4' |
H4' |
C5' |
246.1 |
237.7 |
| H4' |
C4' |
C5' |
H5' |
293.6 |
67.3 |
| H4' |
C4' |
C5' |
H5'A |
52.6 |
187.3 |
| C5' |
O5' |
P |
OP1 |
6.5 |
175.0 |
| O5' |
C5' |
C4' |
H4' |
173.1 |
307.4 |
| C4' |
C5' |
O5' |
H5' |
120.5 |
119.9 |
| C4' |
C5' |
O5' |
H5'A |
239.5 |
240.0 |
| H5' |
C5' |
O5' |
H5'A |
119.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
293.6 |
67.3 |
| C4' |
C5' |
H5' |
H5'A |
118.5 |
120.0 |
| O5' |
C5' |
H5' |
H5'A |
241.5 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
52.6 |
187.3 |
| C4' |
C5' |
H5'A |
H5' |
241.5 |
240.0 |
| O5' |
C5' |
H5'A |
H5' |
118.5 |
120.0 |