PDB Chemical Component 1W5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1W5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3' |
C3' |
1.442 |
1.429 |
| N4 |
C4 |
1.338 |
1.390 |
| C3' |
C2' |
1.532 |
1.546 |
| C3' |
C4' |
1.509 |
1.544 |
| C2' |
C1' |
1.511 |
1.544 |
| N3 |
C4 |
1.355 |
1.325 |
| N3 |
C2 |
1.410 |
1.324 |
| O2 |
C2 |
1.195 |
1.356 |
| C4 |
C5 |
1.387 |
1.390 |
| C2 |
C1 |
1.448 |
1.388 |
| ON1 |
N |
1.206 |
1.218 |
| C5 |
N |
1.420 |
1.480 |
| C5 |
C6 |
1.433 |
1.385 |
| C1 |
C6 |
1.335 |
1.387 |
| C1 |
C1' |
1.440 |
1.507 |
| N |
ON2 |
1.190 |
1.219 |
| OP2 |
P |
1.504 |
1.480 |
| C1' |
O4' |
1.456 |
1.445 |
| O5' |
P |
1.606 |
1.611 |
| O5' |
C5' |
1.418 |
1.429 |
| C4' |
C5' |
1.521 |
1.531 |
| C4' |
O4' |
1.457 |
1.445 |
| P |
OP1 |
1.466 |
1.610 |
| P |
OP3 |
1.587 |
1.611 |
| N4 |
H1 |
1.000 |
0.970 |
| N4 |
H2 |
1.000 |
0.970 |
| C6 |
H4 |
1.080 |
1.080 |
| C1' |
H5 |
1.100 |
1.090 |
| C2' |
H6 |
1.100 |
1.090 |
| C2' |
H7 |
1.100 |
1.089 |
| C3' |
H8 |
1.101 |
1.090 |
| O3' |
H9 |
0.950 |
0.967 |
| C4' |
H10 |
1.100 |
1.090 |
| C5' |
H11 |
1.100 |
1.090 |
| C5' |
H12 |
1.100 |
1.090 |
| OP1 |
HOP1 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| O2 |
H15 |
0.950 |
0.967 |
Bond Angles for 1W5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3' |
C3' |
C4' |
113.0 |
110.5 |
| O3' |
C3' |
H8 |
111.9 |
110.6 |
| N4 |
C4 |
C5 |
126.8 |
119.7 |
| C3' |
C2' |
H6 |
109.2 |
110.5 |
| C3' |
C2' |
H7 |
109.3 |
110.6 |
| C3' |
C4' |
C5' |
108.6 |
110.4 |
| C3' |
C4' |
O4' |
105.5 |
104.8 |
| C4' |
C3' |
H8 |
110.9 |
110.5 |
| C3' |
C4' |
H10 |
110.1 |
110.4 |
| C2' |
C1' |
O4' |
101.6 |
104.8 |
| C2' |
C1' |
H5 |
109.8 |
110.5 |
| N3 |
C4 |
C5 |
116.8 |
120.7 |
| C4 |
C5 |
C6 |
118.9 |
119.3 |
| C2 |
C1 |
C6 |
119.6 |
119.3 |
| C2 |
C1 |
C1' |
116.0 |
120.4 |
| ON1 |
N |
ON2 |
122.8 |
120.0 |
| C5 |
N |
ON2 |
117.6 |
119.9 |
| C1 |
C6 |
C5 |
123.3 |
118.6 |
| C5 |
C6 |
H4 |
118.4 |
120.7 |
| C6 |
C1 |
C1' |
124.4 |
120.4 |
| C1 |
C6 |
H4 |
118.4 |
120.7 |
| C1 |
C1' |
O4' |
116.0 |
110.3 |
| C1 |
C1' |
H5 |
110.9 |
110.3 |
| OP2 |
P |
OP3 |
112.8 |
109.5 |
| C1' |
O4' |
C4' |
112.0 |
105.2 |
| O4' |
C1' |
H5 |
110.6 |
110.3 |
| O5' |
P |
OP1 |
110.8 |
109.5 |
| O5' |
P |
OP3 |
111.5 |
109.4 |
| O5' |
C5' |
H11 |
111.1 |
109.5 |
| O5' |
C5' |
H12 |
111.1 |
109.5 |
| O4' |
C4' |
C5' |
111.6 |
110.3 |
| C5' |
C4' |
H10 |
110.0 |
110.3 |
| C4' |
C5' |
H11 |
111.1 |
109.5 |
| C4' |
C5' |
H12 |
111.1 |
109.5 |
| O4' |
C4' |
H10 |
110.9 |
110.4 |
| OP1 |
P |
OP3 |
90.2 |
109.5 |
| P |
OP1 |
HOP1 |
109.5 |
114.1 |
| P |
OP3 |
HOP3 |
109.5 |
113.9 |
| H1 |
N4 |
H2 |
109.5 |
120.0 |
| H6 |
C2' |
H7 |
109.5 |
110.6 |
| H11 |
C5' |
H12 |
109.5 |
109.5 |
Torsion Angles for 1W5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3' |
C3' |
C2' |
H6 |
268.2 |
0.1 |
| O3' |
C3' |
C2' |
H7 |
28.0 |
237.3 |
| O3' |
C3' |
C4' |
C5' |
90.2 |
98.5 |
| O3' |
C3' |
C4' |
O4' |
210.0 |
217.4 |
| C4' |
C3' |
O3' |
H8 |
234.1 |
237.3 |
| O3' |
C3' |
C4' |
H10 |
329.7 |
336.3 |
| N3 |
C4 |
N4 |
C5 |
179.2 |
180.0 |
| N4 |
C4 |
C5 |
C6 |
179.1 |
180.0 |
| C3' |
C2' |
C1' |
O4' |
346.2 |
24.0 |
| C3' |
C2' |
C1' |
H5 |
229.1 |
265.1 |
| H6 |
C2' |
C3' |
H7 |
240.2 |
122.7 |
| O3' |
C3' |
C4' |
H8 |
126.5 |
122.7 |
| C4' |
C3' |
C2' |
H6 |
149.2 |
241.4 |
| C4' |
C3' |
C2' |
H7 |
269.0 |
118.6 |
| C1' |
O4' |
C4' |
C3' |
27.6 |
40.5 |
| O4' |
C4' |
C3' |
C5' |
119.8 |
118.8 |
| C5' |
C4' |
C3' |
H10 |
120.5 |
122.3 |
| C3' |
C4' |
C5' |
H11 |
301.5 |
305.0 |
| C3' |
C4' |
C5' |
H12 |
179.4 |
65.0 |
| O4' |
C4' |
C3' |
H10 |
240.3 |
241.1 |
| C1 |
C1' |
C2' |
O4' |
122.3 |
118.8 |
| C1 |
C1' |
C2' |
H5 |
239.4 |
237.7 |
| C2' |
C1' |
O4' |
C4' |
351.6 |
319.5 |
| O4' |
C1' |
C2' |
H5 |
117.1 |
118.9 |
| N4 |
C4 |
N3 |
C5 |
180.7 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
359.9 |
360.0 |
| N3 |
C2 |
C1 |
C6 |
0.3 |
359.9 |
| N3 |
C2 |
C1 |
C1' |
178.5 |
179.7 |
| O2 |
C2 |
C1 |
C6 |
179.5 |
180.0 |
| O2 |
C2 |
C1 |
C1' |
357.7 |
359.7 |
| C4 |
C5 |
N |
ON2 |
181.5 |
217.7 |
| C1 |
C6 |
C5 |
C4 |
0.1 |
0.0 |
| C4 |
C5 |
C6 |
H4 |
180.1 |
180.3 |
| C2 |
C1 |
C6 |
C5 |
359.8 |
360.0 |
| C6 |
C1 |
C2 |
C1' |
181.8 |
180.2 |
| C2 |
C1 |
C6 |
H4 |
179.8 |
179.7 |
| C2 |
C1 |
C1' |
O4' |
195.4 |
203.8 |
| C2 |
C1 |
C1' |
H5 |
322.6 |
326.0 |
| C5 |
N |
ON1 |
ON2 |
182.0 |
179.8 |
| ON1 |
N |
C5 |
ON2 |
178.1 |
180.2 |
| C6 |
C5 |
N |
ON2 |
1.1 |
37.8 |
| C5 |
C6 |
C1 |
C1' |
181.7 |
180.2 |
| C1 |
C6 |
C5 |
H4 |
180.0 |
179.7 |
| C4 |
C5 |
C6 |
C1 |
0.1 |
0.0 |
| C2 |
C1 |
C6 |
C1' |
178.0 |
179.8 |
| C5 |
C6 |
C1 |
H4 |
180.0 |
180.3 |
| C6 |
C1 |
C1' |
O4' |
13.5 |
23.6 |
| C6 |
C1 |
C1' |
H5 |
140.7 |
145.8 |
| C2' |
C1' |
C1 |
O4' |
247.2 |
244.6 |
| C2' |
C1' |
C1 |
H5 |
120.0 |
122.4 |
| C2 |
C1 |
C1' |
C6 |
181.9 |
180.2 |
| C1' |
C1 |
C6 |
C5 |
181.7 |
180.2 |
| C1' |
C1 |
C6 |
H4 |
1.8 |
359.9 |
| C1 |
C1' |
O4' |
C4' |
235.5 |
200.7 |
| O4' |
C1' |
C1 |
H5 |
232.7 |
237.8 |
| O5' |
P |
OP2 |
OP3 |
129.6 |
119.9 |
| OP1 |
P |
OP2 |
OP3 |
259.1 |
239.9 |
| OP2 |
P |
OP1 |
HOP1 |
360.0 |
180.0 |
| OP2 |
P |
OP3 |
HOP3 |
0.0 |
300.0 |
| C3' |
C4' |
O4' |
C1' |
27.6 |
40.5 |
| C2' |
C1' |
O4' |
H5 |
243.5 |
241.0 |
| C1 |
C1' |
O4' |
H5 |
127.4 |
122.1 |
| C1' |
O4' |
C4' |
C5' |
145.4 |
159.3 |
| C1' |
O4' |
C4' |
H10 |
268.4 |
281.6 |
| OP2 |
P |
O5' |
OP3 |
229.8 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
98.8 |
120.0 |
| O5' |
P |
OP1 |
HOP1 |
131.8 |
300.0 |
| O5' |
P |
OP3 |
HOP3 |
228.5 |
180.1 |
| C5' |
O5' |
P |
OP1 |
34.8 |
295.0 |
| C5' |
O5' |
P |
OP3 |
295.9 |
175.0 |
| O5' |
C5' |
C4' |
H10 |
181.1 |
307.3 |
| C4' |
C5' |
O5' |
H11 |
241.0 |
120.0 |
| C4' |
C5' |
O5' |
H12 |
118.9 |
240.0 |
| H11 |
C5' |
O5' |
H12 |
237.9 |
120.0 |
| C3' |
C4' |
C5' |
O4' |
115.9 |
115.4 |
| C5' |
C4' |
C3' |
H8 |
323.7 |
335.8 |
| C3' |
C4' |
C5' |
H10 |
239.4 |
237.7 |
| O5' |
C5' |
C4' |
H11 |
119.0 |
240.0 |
| O5' |
C5' |
C4' |
H12 |
241.0 |
120.0 |
| O4' |
C4' |
C5' |
H10 |
123.5 |
122.3 |
| H11 |
C5' |
C4' |
H12 |
122.1 |
240.0 |
| C3' |
C4' |
O4' |
C5' |
242.2 |
241.1 |
| O4' |
C4' |
C3' |
H8 |
83.5 |
94.6 |
| C3' |
C4' |
O4' |
H10 |
119.2 |
118.9 |
| C4' |
O4' |
C1' |
H5 |
108.1 |
78.5 |
| C5' |
C4' |
O4' |
H10 |
237.0 |
237.8 |
| O4' |
C4' |
C5' |
H11 |
185.6 |
189.6 |
| O4' |
C4' |
C5' |
H12 |
63.6 |
309.6 |
| OP2 |
P |
OP1 |
OP3 |
115.1 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
246.9 |
240.1 |
| OP1 |
P |
OP3 |
HOP3 |
116.0 |
60.1 |
| O5' |
P |
OP3 |
OP1 |
112.5 |
120.0 |
| OP3 |
P |
OP1 |
HOP1 |
244.9 |
59.9 |
| H1 |
N4 |
C4 |
C5 |
180.8 |
188.6 |
| H2 |
N4 |
C4 |
C5 |
300.8 |
8.6 |
| C1 |
C6 |
H4 |
C5 |
180.0 |
180.3 |
| H4 |
C6 |
C1 |
C1' |
1.8 |
359.9 |
| C2' |
C1' |
H5 |
O4' |
111.3 |
115.5 |
| C1 |
C1' |
H5 |
O4' |
229.8 |
237.8 |
| H5 |
C1' |
O4' |
C4' |
108.1 |
78.5 |
| C3' |
C2' |
H6 |
H7 |
119.6 |
237.2 |
| H6 |
C2' |
C1' |
O4' |
226.1 |
142.6 |
| H6 |
C2' |
C1' |
H5 |
109.0 |
23.7 |
| C3' |
C2' |
H7 |
H6 |
240.4 |
122.7 |
| H7 |
C2' |
C1' |
O4' |
106.3 |
265.3 |
| H7 |
C2' |
C1' |
H5 |
349.2 |
146.4 |
| O3' |
C3' |
H8 |
C4' |
232.9 |
237.3 |
| H8 |
C3' |
C2' |
H6 |
32.7 |
122.8 |
| H8 |
C3' |
C2' |
H7 |
152.5 |
0.0 |
| H8 |
C3' |
C4' |
C5' |
323.7 |
335.8 |
| H8 |
C3' |
C4' |
O4' |
83.5 |
94.6 |
| H8 |
C3' |
C4' |
H10 |
203.2 |
213.5 |
| H9 |
O3' |
C3' |
C4' |
290.3 |
176.1 |
| H9 |
O3' |
C3' |
H8 |
56.3 |
298.8 |
| C3' |
C4' |
H10 |
C5' |
119.7 |
122.3 |
| C3' |
C4' |
H10 |
O4' |
243.6 |
244.5 |
| H10 |
C4' |
C3' |
H8 |
203.2 |
213.5 |
| O4' |
C4' |
H10 |
C5' |
236.1 |
237.8 |
| H10 |
C4' |
C5' |
H11 |
62.1 |
67.3 |
| H10 |
C4' |
C5' |
H12 |
300.0 |
187.3 |
| O5' |
C5' |
H11 |
H12 |
123.0 |
240.0 |
| H11 |
C5' |
C4' |
H10 |
62.1 |
67.3 |
| C4' |
C5' |
H11 |
H12 |
237.0 |
120.0 |
| O5' |
C5' |
H12 |
H11 |
237.0 |
120.0 |
| H12 |
C5' |
C4' |
H10 |
300.0 |
187.3 |
| C4' |
C5' |
H12 |
H11 |
123.0 |
240.0 |
| HOP1 |
OP1 |
P |
OP3 |
244.9 |
59.9 |