PDB Chemical Component 1VU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1VU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5 P 1.422 1.480
C C1 1.488 1.530
O9 P1 1.551 1.480
C13 O4 1.422 1.428
C13 C10 1.527 1.529
C12 C10 1.510 1.531
P O4 1.593 1.610
P O6 1.582 1.611
P O7 1.539 1.610
C11 C10 1.506 1.530
C1 C2 1.520 1.507
C10 C9 1.529 1.530
O7 P1 1.554 1.610
P1 O8 1.429 1.610
P1 O10 1.570 1.610
C2 S 1.667 1.712
C2 O 1.196 1.214
S C3 1.743 1.810
C9 O3 1.405 1.429
C9 C8 1.511 1.507
O10 C14 1.408 1.428
O2 C8 1.190 1.213
C8 N1 1.310 1.347
N C4 1.428 1.465
N C5 1.290 1.348
C14 C15 1.501 1.530
C6 C5 1.499 1.508
C6 C7 1.510 1.530
N1 C7 1.430 1.465
C4 C3 1.511 1.530
C5 O1 1.165 1.212
C23 C22 1.522 1.545
C23 C15 1.507 1.545
C23 O13 1.405 1.429
C17 N3 1.340 1.301
C17 N2 1.315 1.364
C22 O12 1.412 1.429
C22 C16 1.512 1.545
C15 O11 1.420 1.444
N3 C18 1.316 1.355
O14 P2 1.435 1.481
O15 P2 1.563 1.609
O11 C16 1.399 1.445
O13 P2 1.600 1.610
N2 C16 1.467 1.464
N2 C21 1.309 1.372
P2 O16 1.599 1.610
C18 C21 1.376 1.405
C18 C19 1.386 1.405
C21 N6 1.333 1.329
N4 C19 1.333 1.384
C19 N5 1.322 1.329
N6 C20 1.317 1.316
N5 C20 1.323 1.321
O15 H1 0.950 0.967
O16 H2 0.950 0.968
C23 H3 1.100 1.090
C22 H4 1.100 1.090
O12 H5 0.950 0.967
C16 H6 1.100 1.089
C20 H7 1.080 1.080
N4 H8 1.000 0.970
N4 H9 1.000 0.969
C17 H10 1.080 1.080
C15 H11 1.100 1.090
C14 H12 1.100 1.090
C14 H13 1.100 1.090
O8 H14 0.950 0.967
O6 H15 0.950 0.967
C13 H16 1.100 1.089
C13 H17 1.100 1.091
C11 H18 1.100 1.090
C11 H19 1.100 1.090
C11 H20 1.100 1.090
C12 H21 1.100 1.090
C12 H22 1.100 1.090
C12 H23 1.100 1.090
C9 H24 1.100 1.090
O3 H25 0.950 0.966
N1 H26 1.001 0.970
C7 H27 1.100 1.090
C7 H28 1.100 1.090
C6 H29 1.100 1.090
C6 H30 1.100 1.090
N H31 1.000 0.970
C4 H32 1.100 1.091
C4 H33 1.100 1.090
C3 H34 1.100 1.090
C3 H35 1.100 1.090
C1 H36 1.100 1.090
C1 H37 1.100 1.090
C H38 1.100 1.090
C H39 1.100 1.090
C H40 1.100 1.090

Bond Angles for 1VU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O5 P O4 105.5 109.5
O5 P O6 115.7 109.5
C C1 H36 108.6 109.4
C C1 H37 108.7 109.5
C13 C10 C9 111.4 109.5
C10 C13 H16 108.8 109.5
C10 C13 H17 108.8 109.4
C12 C10 C9 112.7 109.5
O6 P O4 110.0 109.5
P O6 H15 109.5 114.0
C11 C10 C9 104.9 109.4
C10 C9 O3 107.0 109.5
C10 C9 C8 112.6 109.5
C10 C9 H24 107.5 109.5
P1 O8 H14 109.5 114.0
S C3 H34 109.3 109.5
S C3 H35 109.4 109.4
O3 C9 C8 112.7 109.4
O3 C9 H24 109.1 109.4
C9 O3 H25 109.5 114.0
C9 C8 N1 117.2 120.0
C8 C9 H24 107.7 109.5
O10 C14 H12 109.1 109.5
O10 C14 H13 109.1 109.5
O2 C8 N1 124.0 120.0
C8 N1 C7 126.6 120.0
C8 N1 H26 116.7 120.0
N C4 C3 112.2 109.5
C4 N H31 118.1 120.0
N C4 H32 108.8 109.5
N C4 H33 108.8 109.5
C14 C15 H11 110.4 110.4
C6 C5 O1 122.0 120.0
C5 C6 H29 108.4 109.5
C5 C6 H30 108.4 109.5
C6 C7 H27 108.7 109.5
C6 C7 H28 108.7 109.5
C7 N1 H26 116.7 120.0
N1 C7 H27 108.7 109.5
N1 C7 H28 108.8 109.4
C3 C4 H32 108.8 109.4
C3 C4 H33 108.8 109.5
C4 C3 H34 109.3 109.5
C4 C3 H35 109.4 109.5
C22 C23 C15 101.9 104.1
C23 C22 O12 112.9 110.5
C23 C22 C16 101.6 104.1
C22 C23 H3 112.4 110.5
C23 C22 H4 110.5 110.5
C23 C15 O11 106.1 104.8
C15 C23 H3 112.6 110.5
C23 C15 H11 110.3 110.4
O12 C22 C16 108.5 110.5
O12 C22 H4 112.2 110.5
C22 O12 H5 109.5 114.0
C16 C22 H4 110.6 110.6
C22 C16 H6 108.0 110.4
O14 P2 O16 111.2 109.5
O15 P2 O16 110.5 109.5
O11 C16 H6 109.5 110.3
N2 C16 H6 108.6 110.3
N2 C21 N6 133.5 134.9
P2 O16 H2 109.5 114.0
C21 N6 C20 121.2 120.6
N6 C20 H7 119.6 118.8
N5 C20 H7 119.5 118.8
H8 N4 H9 109.4 120.0
H12 C14 H13 109.5 109.4
H16 C13 H17 109.5 109.5
H18 C11 H19 109.5 109.5
H18 C11 H20 109.5 109.4
H19 C11 H20 109.5 109.5
H21 C12 H22 109.4 109.5
H21 C12 H23 109.5 109.5
H22 C12 H23 109.4 109.5
H27 C7 H28 109.5 109.5
H29 C6 H30 109.5 109.4
H32 C4 H33 109.4 109.5
H34 C3 H35 109.5 109.4
H36 C1 H37 109.4 109.5
H38 C H39 109.5 109.5
H38 C H40 109.5 109.5
H39 C H40 109.5 109.4

Torsion Angles for 1VU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O6 P O5 O4 121.8 120.0
O5 P O6 H15 0.0 180.0
H36 C1 C H37 241.0 120.0
O9 P1 O8 H14 360.0 180.0
C12 C10 C13 C9 237.1 240.0
C11 C10 C13 C9 117.0 120.0
C13 C10 C9 O3 50.6 294.5
C13 C10 C9 C8 175.0 54.4
C13 C10 C9 H24 293.6 174.5
H16 C13 C10 H17 119.2 120.0
C13 C10 C12 C9 122.0 120.0
C12 C10 C13 H16 175.2 299.9
C12 C10 C13 H17 56.0 180.0
C11 C10 C12 C9 243.0 240.1
C12 C10 C9 O3 169.5 54.4
C12 C10 C9 C8 293.9 174.4
C12 C10 C9 H24 52.4 294.4
O5 P O4 O6 125.4 120.0
O4 P O6 H15 119.4 300.0
O5 P O6 O4 240.6 240.0
C13 C10 C11 C9 239.2 239.9
C11 C10 C13 H16 55.1 180.0
C11 C10 C13 H17 295.8 60.0
C12 C10 C11 C9 121.7 119.9
C11 C10 C9 O3 289.7 174.4
C11 C10 C9 C8 54.1 294.3
C11 C10 C9 H24 172.6 54.4
C9 C10 C13 H16 298.1 59.9
C9 C10 C13 H17 178.9 300.0
O3 C9 C10 C8 235.6 240.0
O3 C9 C10 H24 117.1 120.0
C10 C9 O3 H25 180.0 60.0
C10 C9 C8 N1 247.7 68.5
C8 C9 C10 H24 241.5 240.0
O7 P1 O8 H14 244.0 60.0
P1 O10 C14 H12 290.8 60.0
P1 O10 C14 H13 50.3 300.0
C2 S C3 H34 198.8 60.0
C2 S C3 H35 318.7 300.0
S C3 C4 H32 316.5 60.0
S C3 C4 H33 197.3 300.0
C4 C3 S H34 240.0 120.0
C4 C3 S H35 120.1 240.0
H34 C3 S H35 240.1 119.9
C10 C9 O3 C8 124.3 120.0
C10 C9 O3 H24 244.0 239.9
O3 C9 C8 N1 8.9 188.5
C8 C9 O3 H24 119.6 120.0
C10 C9 C8 O3 238.8 240.0
C10 C9 C8 H24 118.4 120.1
O3 C9 C8 H24 239.6 240.1
C8 C9 O3 H25 55.6 300.0
O2 C8 C9 N1 179.7 180.0
C9 C8 N1 C7 182.5 184.4
C9 C8 N1 H26 2.5 4.5
O10 C14 C15 H11 164.5 307.4
H12 C14 O10 H13 240.5 120.0
C9 C8 O2 N1 180.3 180.0
O2 C8 C9 H24 309.0 128.4
O2 C8 N1 C7 2.9 4.4
O2 C8 N1 H26 182.8 184.5
N1 C8 C9 H24 129.3 308.5
C7 N1 C8 H26 180.0 179.9
C8 N1 C7 H27 153.7 300.0
C8 N1 C7 H28 34.6 60.0
C3 C4 N H32 239.6 240.0
C3 C4 N H33 120.4 120.0
N C4 C3 H34 316.8 300.0
N C4 C3 H35 197.0 60.0
H32 C4 N H33 240.8 240.0
N C5 C6 H29 301.4 60.0
N C5 C6 H30 60.2 300.0
C14 C15 C23 H3 33.3 335.8
C23 C15 C14 H11 237.3 237.6
C5 C6 C7 H27 307.3 60.0
C5 C6 C7 H28 66.4 300.0
H29 C6 C5 H30 241.2 120.0
C6 C7 N1 H26 94.2 359.9
N1 C7 C6 H27 239.6 120.0
N1 C7 C6 H28 120.4 240.0
H27 C7 C6 H28 240.9 120.0
C8 N1 C7 H26 180.0 180.1
C6 C7 N1 H27 120.4 240.0
C6 C7 N1 H28 239.6 120.0
H27 C7 N1 H28 119.2 240.0
S C3 C4 H34 120.1 240.0
S C3 C4 H35 239.9 120.0
C3 C4 N H31 280.1 0.0
N C4 C3 H32 120.4 120.0
N C4 C3 H33 239.6 240.0
H32 C4 C3 H33 119.2 120.0
H34 C3 C4 H35 119.9 240.0
O1 C5 C6 H29 122.1 240.0
O1 C5 C6 H30 240.9 120.0
C22 C23 C15 O11 28.7 336.0
C15 C23 C22 H3 120.8 118.6
C22 C23 C15 H11 149.8 94.8
O12 C22 C23 C16 243.9 241.4
O12 C22 C23 H4 126.5 122.6
C23 C22 O12 H5 180.0 180.1
C16 C22 C23 H4 242.6 241.2
C23 C22 C16 H6 273.4 265.2
C14 C15 C23 H11 122.8 122.4
C15 C23 C22 O12 208.5 241.4
C15 C23 C22 C16 324.5 360.0
C22 C23 C15 H3 239.4 241.4
C15 C23 C22 H4 82.0 118.8
C17 N2 C16 H6 209.9 142.4
O12 C22 C23 C15 208.5 241.4
C23 C22 O12 C16 111.9 114.7
O12 C22 C23 H3 87.6 122.7
C23 C22 O12 H4 234.4 237.4
C16 C22 O12 H4 122.5 122.7
O12 C22 C16 H6 32.7 23.8
C16 C22 C23 C15 324.5 360.0
C23 C22 C16 O12 240.8 241.4
C16 C22 C23 H3 203.7 241.4
C23 C22 C16 H4 117.3 118.7
O12 C22 C16 H4 236.5 237.4
C16 C22 O12 H5 68.1 65.4
O11 C16 C22 H6 117.4 118.8
N2 C16 C22 H6 238.5 237.7
O11 C15 C23 H3 149.4 94.6
C23 C15 O11 H11 120.2 118.9
C15 O11 C16 H6 102.9 78.3
O15 P2 O14 O16 124.2 240.0
O14 P2 O16 H2 0.0 300.0
O14 P2 O15 O16 235.4 120.0
O15 P2 O16 H2 234.9 60.0
C23 C15 O11 C16 350.1 40.5
O11 C16 C22 H4 273.5 265.3
C22 C16 O11 H6 243.6 241.1
N2 C16 O11 H6 118.9 122.3
O13 P2 O16 H2 111.2 180.0
N2 C16 C22 H4 34.6 24.2
C22 C16 N2 H6 121.2 122.3
O11 C16 N2 H6 240.6 237.7
C21 N2 C16 H6 31.8 322.7
N2 C21 N6 C20 180.7 180.0
C21 N6 C20 H7 180.2 179.9
C19 N5 C20 H7 178.7 180.0
N5 C20 N6 H7 180.0 180.1
N6 C20 N5 H7 180.0 179.9
H1 O15 P2 O16 124.6 60.0
C22 C23 H3 C15 114.5 114.6
H3 C23 C22 O12 87.6 122.7
H3 C23 C22 C16 203.7 241.4
H3 C23 C22 H4 321.1 0.2
H3 C23 C15 O11 149.4 94.6
H3 C23 C15 H11 270.5 213.4
H4 C22 C23 C15 82.0 118.8
C23 C22 H4 O12 126.9 122.6
C23 C22 H4 C16 248.3 245.2
H4 C22 C23 H3 321.1 0.2
O12 C22 H4 C16 121.3 122.7
H4 C22 O12 H5 305.6 302.6
H4 C22 C16 H6 156.1 146.5
H5 O12 C22 C16 68.1 65.4
H5 O12 C22 H4 305.6 302.6
H6 C16 C22 H4 156.1 146.5
C23 C15 H11 O11 242.3 244.6
H11 C15 C23 H3 270.5 213.4
O10 C14 H12 H13 119.3 240.0
H12 C14 C15 H11 44.3 67.4
O10 C14 H13 H12 240.7 120.0
H13 C14 C15 H11 284.8 187.3
H15 O6 P O4 119.4 300.0
H16 C13 C10 C9 298.1 59.9
C10 C13 H16 H17 241.2 240.1
H17 C13 C10 C9 178.9 300.0
C10 C13 H17 H16 118.8 120.0
H18 C11 C10 C9 300.8 186.3
H19 C11 H18 H20 120.0 120.0
H19 C11 C10 C9 60.8 306.4
H18 C11 H19 H20 240.0 240.1
H20 C11 C10 C9 180.8 66.4
H18 C11 H20 H19 120.0 120.0
H21 C12 C10 C9 58.0 304.6
H22 C12 H21 H23 120.0 120.0
H22 C12 C10 C9 178.0 64.6
H21 C12 H22 H23 240.0 240.0
H23 C12 C10 C9 297.9 184.6
H21 C12 H23 H22 119.9 120.0
C10 C9 H24 O3 115.7 120.0
C10 C9 H24 C8 238.4 240.0
O3 C9 H24 C8 122.7 119.9
H24 C9 O3 H25 296.0 180.0
H24 C9 C8 N1 129.3 308.5
H25 O3 C9 C8 55.6 300.0
H25 O3 C9 H24 296.0 180.0
C8 N1 H26 C7 180.0 179.9
H26 N1 C7 H27 333.8 120.0
H26 N1 C7 H28 214.6 240.0
C6 C7 H27 H28 118.6 240.0
H27 C7 N1 H26 333.8 120.0
N1 C7 H27 H28 241.3 120.0
C6 C7 H28 H27 241.4 120.0
H28 C7 N1 H26 214.6 240.0
N1 C7 H28 H27 118.7 240.0
H29 C6 C5 O1 122.1 240.0
C5 C6 H29 H30 118.1 240.0
H29 C6 C7 H27 186.7 180.0
H29 C6 C7 H28 305.8 60.0
H30 C6 C5 O1 240.9 120.0
C5 C6 H30 H29 241.9 120.0
H30 C6 C7 H27 67.9 300.0
H30 C6 C7 H28 187.0 180.0
H31 N C4 C3 280.1 0.0
H31 N C4 H32 40.5 120.0
H31 N C4 H33 159.6 240.0
N C4 H32 C3 237.5 240.0
H32 C4 N H31 40.5 120.0
N C4 H32 H33 118.8 120.1
C3 C4 H32 H33 241.2 240.0
H32 C4 C3 H34 196.4 180.0
H32 C4 C3 H35 76.6 300.0
N C4 H33 C3 122.5 120.0
H33 C4 N H31 159.6 240.0
N C4 H33 H32 241.2 240.0
C3 C4 H33 H32 118.7 120.0
H33 C4 C3 H34 77.3 60.1
H33 C4 C3 H35 317.4 180.0
S C3 H34 H35 119.8 240.1
H34 C3 C4 H32 196.4 180.0
H34 C3 C4 H33 77.3 60.1
C4 C3 H34 H35 240.2 120.0
S C3 H35 H34 240.2 120.0
H35 C3 C4 H32 76.6 300.0
H35 C3 C4 H33 317.4 180.0
C4 C3 H35 H34 119.8 240.0
C C1 H36 H37 118.5 240.0
C C1 H37 H36 241.5 120.0
H38 C C1 H36 300.5 60.0
H38 C C1 H37 59.5 300.0
H39 C H38 H40 120.0 120.0
H39 C C1 H36 60.5 180.0
H39 C C1 H37 179.5 60.0
H38 C H39 H40 240.0 240.0
H40 C C1 H36 180.5 300.0
H40 C C1 H37 299.5 180.0
H38 C H40 H39 120.0 120.0