PDB Chemical Component 1TB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1TB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C4 |
C5 |
1.423 |
1.384 |
C4 |
C3 |
1.416 |
1.384 |
C4 |
H4 |
1.103 |
1.080 |
C5 |
C6 |
1.414 |
1.379 |
C5 |
H5 |
1.103 |
1.080 |
C6 |
C1 |
1.430 |
1.396 |
C6 |
H6 |
1.103 |
1.080 |
C1 |
C2 |
1.473 |
1.397 |
C1 |
C11 |
1.551 |
1.477 |
C2 |
C3 |
1.421 |
1.380 |
C2 |
S7 |
1.823 |
1.762 |
C3 |
H3 |
1.103 |
1.079 |
C11 |
O12 |
1.409 |
1.347 |
C11 |
O11 |
1.246 |
1.216 |
O12 |
C13 |
1.393 |
1.452 |
C13 |
H131 |
1.115 |
1.090 |
C13 |
H132 |
1.115 |
1.090 |
C13 |
H133 |
1.115 |
1.089 |
S7 |
N8 |
1.468 |
1.656 |
S7 |
O7A |
1.480 |
1.421 |
S7 |
O7B |
1.457 |
1.421 |
N8 |
C9 |
1.409 |
1.348 |
N8 |
HN8 |
1.020 |
0.970 |
C9 |
O9 |
1.243 |
1.216 |
C9 |
N10 |
1.392 |
1.347 |
N10 |
C2' |
1.396 |
1.386 |
N10 |
C10 |
1.450 |
1.465 |
C2' |
N1' |
1.446 |
1.330 |
C2' |
N3' |
1.409 |
1.328 |
N1' |
C6' |
1.421 |
1.322 |
C6' |
N5' |
1.404 |
1.322 |
C6' |
C7' |
1.527 |
1.506 |
N5' |
C4' |
1.420 |
1.329 |
C4' |
N3' |
1.434 |
1.327 |
C4' |
O4' |
1.400 |
1.353 |
C10 |
H101 |
1.115 |
1.090 |
C10 |
H102 |
1.115 |
1.090 |
C10 |
H103 |
1.115 |
1.090 |
O4' |
C5' |
1.416 |
1.429 |
C5' |
H5'1 |
1.115 |
1.090 |
C5' |
H5'2 |
1.115 |
1.090 |
C5' |
H5'3 |
1.115 |
1.090 |
C7' |
H7'1 |
1.115 |
1.091 |
C7' |
H7'2 |
1.115 |
1.090 |
C7' |
H7'3 |
1.115 |
1.090 |
Bond Angles for 1TB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C4 |
C3 |
121.0 |
120.3 |
C5 |
C4 |
H4 |
119.8 |
119.9 |
C4 |
C5 |
C6 |
119.9 |
120.2 |
C4 |
C5 |
H5 |
120.4 |
119.9 |
C3 |
C4 |
H4 |
119.2 |
119.8 |
C4 |
C3 |
C2 |
120.9 |
120.1 |
C4 |
C3 |
H3 |
119.4 |
120.0 |
C6 |
C5 |
H5 |
119.7 |
119.9 |
C5 |
C6 |
C1 |
120.0 |
119.8 |
C5 |
C6 |
H6 |
119.4 |
120.1 |
C1 |
C6 |
H6 |
120.5 |
120.1 |
C6 |
C1 |
C2 |
120.2 |
119.7 |
C6 |
C1 |
C11 |
116.4 |
120.1 |
C2 |
C1 |
C11 |
123.4 |
120.1 |
C1 |
C2 |
C3 |
117.9 |
119.8 |
C1 |
C2 |
S7 |
123.6 |
120.1 |
C1 |
C11 |
O12 |
115.6 |
120.0 |
C1 |
C11 |
O11 |
121.2 |
120.0 |
C3 |
C2 |
S7 |
118.5 |
120.1 |
C2 |
C3 |
H3 |
119.7 |
119.9 |
C2 |
S7 |
N8 |
115.6 |
107.4 |
C2 |
S7 |
O7A |
108.1 |
105.7 |
C2 |
S7 |
O7B |
107.6 |
105.8 |
O12 |
C11 |
O11 |
123.2 |
120.0 |
C11 |
O12 |
C13 |
119.7 |
120.1 |
O12 |
C13 |
H131 |
108.5 |
109.5 |
O12 |
C13 |
H132 |
119.7 |
109.5 |
O12 |
C13 |
H133 |
108.5 |
109.5 |
H131 |
C13 |
H132 |
108.6 |
109.5 |
H131 |
C13 |
H133 |
101.5 |
109.5 |
H132 |
C13 |
H133 |
108.6 |
109.5 |
N8 |
S7 |
O7A |
108.3 |
105.8 |
N8 |
S7 |
O7B |
106.6 |
105.8 |
S7 |
N8 |
C9 |
126.8 |
120.0 |
S7 |
N8 |
HN8 |
106.1 |
120.0 |
O7A |
S7 |
O7B |
110.6 |
125.4 |
C9 |
N8 |
HN8 |
106.1 |
120.0 |
N8 |
C9 |
O9 |
120.4 |
120.0 |
N8 |
C9 |
N10 |
118.6 |
120.0 |
O9 |
C9 |
N10 |
121.0 |
120.0 |
C9 |
N10 |
C2' |
127.3 |
120.0 |
C9 |
N10 |
C10 |
119.9 |
120.0 |
C2' |
N10 |
C10 |
112.9 |
120.0 |
N10 |
C2' |
N1' |
121.7 |
120.0 |
N10 |
C2' |
N3' |
117.9 |
120.1 |
N10 |
C10 |
H101 |
108.5 |
109.5 |
N10 |
C10 |
H102 |
119.9 |
109.5 |
N10 |
C10 |
H103 |
108.5 |
109.5 |
N1' |
C2' |
N3' |
120.4 |
119.9 |
C2' |
N1' |
C6' |
120.6 |
120.0 |
C2' |
N3' |
C4' |
119.9 |
119.9 |
N1' |
C6' |
N5' |
117.1 |
120.2 |
N1' |
C6' |
C7' |
120.5 |
119.9 |
N5' |
C6' |
C7' |
122.5 |
119.9 |
C6' |
N5' |
C4' |
124.4 |
120.1 |
C6' |
C7' |
H7'1 |
108.3 |
109.5 |
C6' |
C7' |
H7'2 |
120.5 |
109.5 |
C6' |
C7' |
H7'3 |
108.3 |
109.5 |
N5' |
C4' |
N3' |
117.7 |
119.9 |
N5' |
C4' |
O4' |
122.1 |
120.0 |
N3' |
C4' |
O4' |
120.2 |
120.0 |
C4' |
O4' |
C5' |
143.0 |
106.8 |
H101 |
C10 |
H102 |
108.5 |
109.4 |
H101 |
C10 |
H103 |
101.5 |
109.5 |
H102 |
C10 |
H103 |
108.5 |
109.5 |
O4' |
C5' |
H5'1 |
101.0 |
109.4 |
O4' |
C5' |
H5'2 |
143.0 |
109.5 |
O4' |
C5' |
H5'3 |
101.0 |
109.4 |
H5'1 |
C5' |
H5'2 |
100.9 |
109.5 |
H5'1 |
C5' |
H5'3 |
106.6 |
109.5 |
H5'2 |
C5' |
H5'3 |
100.9 |
109.5 |
H7'1 |
C7' |
H7'2 |
108.3 |
109.4 |
H7'1 |
C7' |
H7'3 |
101.7 |
109.4 |
H7'2 |
C7' |
H7'3 |
108.3 |
109.5 |
Torsion Angles for 1TB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
C5 |
C4 |
C3 |
C2 |
359.9 |
359.7 |
C5 |
C4 |
C3 |
H3 |
179.9 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
C1 |
0.0 |
360.0 |
C4 |
C5 |
C6 |
H6 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
179.9 |
C3 |
C4 |
C5 |
C6 |
0.0 |
0.0 |
C3 |
C4 |
C5 |
H5 |
180.0 |
180.1 |
C1 |
C2 |
C3 |
C4 |
0.0 |
0.6 |
C4 |
C3 |
C2 |
S7 |
180.1 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
179.7 |
C5 |
C4 |
H4 |
C3 |
180.0 |
180.1 |
H4 |
C4 |
C5 |
C6 |
180.0 |
179.9 |
H4 |
C4 |
C5 |
H5 |
0.0 |
360.0 |
H4 |
C4 |
C3 |
C2 |
179.9 |
179.8 |
H4 |
C4 |
C3 |
H3 |
359.9 |
0.1 |
C6 |
C5 |
C4 |
C3 |
0.0 |
0.0 |
C6 |
C5 |
C4 |
H4 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C5 |
C6 |
C1 |
C2 |
359.9 |
0.2 |
C5 |
C6 |
C1 |
C11 |
179.9 |
180.0 |
H5 |
C5 |
C4 |
C3 |
180.0 |
180.1 |
H5 |
C5 |
C4 |
H4 |
0.0 |
360.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
C1 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
H6 |
0.0 |
0.0 |
C1 |
C6 |
C5 |
H5 |
180.0 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C2 |
C1 |
C6 |
C11 |
180.0 |
180.3 |
C6 |
C1 |
C2 |
C3 |
0.0 |
359.5 |
C6 |
C1 |
C2 |
S7 |
180.0 |
180.0 |
C6 |
C1 |
C11 |
O12 |
75.2 |
1.8 |
C6 |
C1 |
C11 |
O11 |
254.0 |
181.8 |
H6 |
C6 |
C5 |
H5 |
0.0 |
0.0 |
C5 |
C6 |
H6 |
C1 |
180.0 |
180.0 |
H6 |
C6 |
C1 |
C2 |
179.9 |
180.2 |
H6 |
C6 |
C1 |
C11 |
359.9 |
359.9 |
C4 |
C3 |
C2 |
C1 |
0.0 |
0.6 |
C2 |
C1 |
C6 |
H6 |
179.9 |
180.2 |
C6 |
C1 |
C2 |
C11 |
180.0 |
179.7 |
C2 |
C1 |
C11 |
O12 |
255.2 |
181.5 |
C2 |
C1 |
C11 |
O11 |
74.0 |
1.5 |
C3 |
C2 |
C1 |
S7 |
180.0 |
179.4 |
C1 |
C2 |
C3 |
H3 |
180.0 |
180.3 |
C1 |
C2 |
S7 |
N8 |
28.9 |
59.6 |
C1 |
C2 |
S7 |
O7A |
150.4 |
172.2 |
C1 |
C2 |
S7 |
O7B |
269.9 |
307.0 |
C11 |
C1 |
C6 |
H6 |
359.9 |
359.9 |
C6 |
C1 |
C11 |
C2 |
180.0 |
180.3 |
C11 |
C1 |
C2 |
C3 |
180.1 |
179.7 |
C11 |
C1 |
C2 |
S7 |
0.0 |
0.3 |
O12 |
C11 |
C1 |
O11 |
181.2 |
180.0 |
C1 |
C11 |
O12 |
C13 |
212.8 |
185.1 |
C2 |
C3 |
C4 |
H4 |
179.9 |
179.8 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.3 |
C3 |
C2 |
C1 |
C11 |
180.1 |
179.7 |
C1 |
C2 |
C3 |
S7 |
180.0 |
180.6 |
C3 |
C2 |
S7 |
N8 |
208.9 |
240.1 |
C3 |
C2 |
S7 |
O7A |
330.4 |
352.7 |
C3 |
C2 |
S7 |
O7B |
89.9 |
127.5 |
S7 |
C2 |
C1 |
C11 |
0.0 |
0.3 |
C1 |
C2 |
S7 |
C3 |
180.0 |
179.4 |
S7 |
C2 |
C3 |
H3 |
0.1 |
359.7 |
N8 |
S7 |
C2 |
O7A |
238.5 |
247.4 |
N8 |
S7 |
C2 |
O7B |
119.0 |
112.6 |
C2 |
S7 |
N8 |
C9 |
60.9 |
61.5 |
C2 |
S7 |
N8 |
HN8 |
295.7 |
241.5 |
O7A |
S7 |
C2 |
O7B |
240.5 |
225.2 |
H3 |
C3 |
C4 |
H4 |
359.9 |
0.1 |
C4 |
C3 |
H3 |
C2 |
180.0 |
179.7 |
H3 |
C3 |
C2 |
S7 |
0.1 |
359.7 |
C1 |
C11 |
O12 |
O11 |
178.8 |
180.0 |
C11 |
O12 |
C13 |
H131 |
54.7 |
55.0 |
C11 |
O12 |
C13 |
H132 |
180.0 |
175.0 |
C11 |
O12 |
C13 |
H133 |
305.3 |
295.0 |
C1 |
C11 |
O11 |
O12 |
181.3 |
180.0 |
O11 |
C11 |
O12 |
C13 |
34.0 |
5.1 |
C13 |
O12 |
C11 |
O11 |
34.0 |
5.1 |
H131 |
C13 |
O12 |
H132 |
234.8 |
240.0 |
H131 |
C13 |
O12 |
H133 |
109.5 |
120.0 |
H132 |
C13 |
O12 |
H133 |
234.7 |
240.0 |
O12 |
C13 |
H131 |
H132 |
131.5 |
120.0 |
O12 |
C13 |
H131 |
H133 |
245.8 |
240.0 |
H132 |
C13 |
H131 |
H133 |
114.3 |
120.0 |
O12 |
C13 |
H132 |
H131 |
234.8 |
240.0 |
O12 |
C13 |
H132 |
H133 |
125.3 |
120.0 |
H131 |
C13 |
H132 |
H133 |
250.5 |
240.0 |
O12 |
C13 |
H133 |
H131 |
114.2 |
120.0 |
O12 |
C13 |
H133 |
H132 |
228.4 |
240.0 |
H131 |
C13 |
H133 |
H132 |
114.2 |
120.0 |
C2 |
S7 |
N8 |
O7A |
121.4 |
112.6 |
C2 |
S7 |
N8 |
O7B |
240.4 |
247.4 |
O7A |
S7 |
N8 |
O7B |
119.1 |
134.8 |
C9 |
N8 |
S7 |
HN8 |
125.3 |
180.0 |
S7 |
N8 |
C9 |
O9 |
359.8 |
5.7 |
S7 |
N8 |
C9 |
N10 |
180.6 |
185.8 |
C2 |
S7 |
O7A |
N8 |
234.1 |
246.2 |
C2 |
S7 |
O7A |
O7B |
117.6 |
123.1 |
N8 |
S7 |
O7A |
O7B |
243.5 |
236.9 |
O7A |
S7 |
N8 |
C9 |
299.6 |
308.9 |
O7A |
S7 |
N8 |
HN8 |
174.3 |
128.9 |
C2 |
S7 |
O7B |
N8 |
124.6 |
113.8 |
C2 |
S7 |
O7B |
O7A |
242.1 |
236.9 |
N8 |
S7 |
O7B |
O7A |
117.6 |
123.1 |
O7B |
S7 |
N8 |
C9 |
180.5 |
174.1 |
O7B |
S7 |
N8 |
HN8 |
55.3 |
354.1 |
C9 |
N8 |
S7 |
O7A |
299.6 |
308.9 |
C9 |
N8 |
S7 |
O7B |
180.5 |
174.1 |
S7 |
N8 |
C9 |
HN8 |
234.8 |
180.0 |
O9 |
C9 |
N8 |
N10 |
179.1 |
179.9 |
N8 |
C9 |
N10 |
C2' |
179.1 |
185.7 |
N8 |
C9 |
N10 |
C10 |
359.5 |
5.7 |
HN8 |
N8 |
S7 |
O7A |
174.3 |
128.9 |
HN8 |
N8 |
S7 |
O7B |
55.3 |
354.1 |
S7 |
N8 |
HN8 |
C9 |
137.1 |
180.0 |
HN8 |
N8 |
C9 |
O9 |
125.0 |
185.7 |
HN8 |
N8 |
C9 |
N10 |
305.9 |
5.8 |
O9 |
C9 |
N8 |
HN8 |
125.0 |
185.7 |
N8 |
C9 |
O9 |
N10 |
180.9 |
180.1 |
O9 |
C9 |
N10 |
C2' |
359.9 |
5.8 |
O9 |
C9 |
N10 |
C10 |
180.4 |
185.8 |
N10 |
C9 |
N8 |
HN8 |
305.9 |
5.8 |
N8 |
C9 |
N10 |
O9 |
179.1 |
179.9 |
C2' |
N10 |
C9 |
C10 |
179.5 |
180.0 |
C9 |
N10 |
C2' |
N1' |
180.4 |
185.2 |
C9 |
N10 |
C2' |
N3' |
0.3 |
5.0 |
C9 |
N10 |
C10 |
H101 |
54.7 |
4.7 |
C9 |
N10 |
C10 |
H102 |
180.0 |
124.6 |
C9 |
N10 |
C10 |
H103 |
305.3 |
244.7 |
C9 |
N10 |
C2' |
C10 |
180.4 |
180.0 |
C2' |
N10 |
C10 |
H101 |
235.1 |
184.6 |
C2' |
N10 |
C10 |
H102 |
0.4 |
304.6 |
C2' |
N10 |
C10 |
H103 |
125.7 |
64.6 |
N1' |
C2' |
N10 |
N3' |
180.0 |
180.2 |
N10 |
C2' |
N1' |
C6' |
179.9 |
180.0 |
N10 |
C2' |
N3' |
C4' |
180.1 |
179.8 |
C9 |
N10 |
C10 |
C2' |
179.6 |
180.0 |
C10 |
N10 |
C2' |
N1' |
359.9 |
5.3 |
C10 |
N10 |
C2' |
N3' |
179.9 |
185.1 |
H101 |
C10 |
N10 |
H102 |
234.7 |
240.0 |
H101 |
C10 |
N10 |
H103 |
109.5 |
120.0 |
H102 |
C10 |
N10 |
H103 |
234.7 |
240.0 |
N1' |
C2' |
N10 |
C10 |
359.9 |
5.3 |
N10 |
C2' |
N1' |
N3' |
180.0 |
179.8 |
N1' |
C2' |
N3' |
C4' |
0.0 |
359.6 |
C2' |
N1' |
C6' |
N5' |
359.9 |
360.0 |
C2' |
N1' |
C6' |
C7' |
180.3 |
180.0 |
N3' |
C2' |
N10 |
C10 |
179.9 |
185.1 |
N10 |
C2' |
N3' |
N1' |
180.0 |
180.2 |
N3' |
C2' |
N1' |
C6' |
359.9 |
0.2 |
N5' |
C4' |
N3' |
C2' |
0.1 |
0.5 |
C2' |
N3' |
C4' |
O4' |
180.4 |
180.2 |
C6' |
N1' |
C2' |
N3' |
359.9 |
0.2 |
N5' |
C6' |
N1' |
C7' |
179.6 |
179.9 |
N1' |
C6' |
N5' |
C4' |
0.2 |
0.0 |
N1' |
C6' |
C7' |
H7'1 |
54.7 |
90.0 |
N1' |
C6' |
C7' |
H7'2 |
180.0 |
210.0 |
N1' |
C6' |
C7' |
H7'3 |
305.3 |
330.0 |
N1' |
C6' |
N5' |
C7' |
180.4 |
180.1 |
N5' |
C6' |
C7' |
H7'1 |
235.1 |
270.0 |
N5' |
C6' |
C7' |
H7'2 |
0.4 |
30.0 |
N5' |
C6' |
C7' |
H7'3 |
125.7 |
150.1 |
C6' |
N5' |
C4' |
N3' |
359.7 |
359.7 |
C6' |
N5' |
C4' |
O4' |
179.4 |
180.0 |
N1' |
C6' |
C7' |
N5' |
179.6 |
179.9 |
C7' |
C6' |
N5' |
C4' |
179.8 |
180.0 |
H7'1 |
C7' |
C6' |
H7'2 |
234.7 |
240.0 |
H7'1 |
C7' |
C6' |
H7'3 |
109.4 |
120.0 |
H7'2 |
C7' |
C6' |
H7'3 |
234.7 |
240.0 |
C2' |
N3' |
C4' |
N5' |
0.1 |
0.5 |
C4' |
N5' |
C6' |
C7' |
179.8 |
180.0 |
N3' |
C4' |
N5' |
O4' |
180.3 |
179.7 |
N5' |
C4' |
O4' |
C5' |
0.2 |
0.0 |
N5' |
C4' |
N3' |
O4' |
179.7 |
180.3 |
N3' |
C4' |
O4' |
C5' |
179.9 |
180.3 |
N5' |
C4' |
O4' |
N3' |
180.3 |
179.7 |
C4' |
O4' |
C5' |
H5'1 |
54.7 |
300.0 |
C4' |
O4' |
C5' |
H5'2 |
180.0 |
60.0 |
C4' |
O4' |
C5' |
H5'3 |
305.3 |
180.0 |
N10 |
C10 |
H101 |
H102 |
131.7 |
120.0 |
N10 |
C10 |
H101 |
H103 |
245.8 |
240.0 |
H102 |
C10 |
H101 |
H103 |
114.1 |
120.0 |
N10 |
C10 |
H102 |
H101 |
234.7 |
240.0 |
N10 |
C10 |
H102 |
H103 |
125.3 |
120.0 |
H101 |
C10 |
H102 |
H103 |
250.6 |
240.0 |
N10 |
C10 |
H103 |
H101 |
114.2 |
120.0 |
N10 |
C10 |
H103 |
H102 |
228.3 |
240.0 |
H101 |
C10 |
H103 |
H102 |
114.1 |
120.0 |
H5'1 |
C5' |
O4' |
H5'2 |
234.7 |
240.0 |
H5'1 |
C5' |
O4' |
H5'3 |
109.5 |
119.9 |
H5'2 |
C5' |
O4' |
H5'3 |
234.7 |
239.9 |
O4' |
C5' |
H5'1 |
H5'2 |
150.0 |
120.0 |
O4' |
C5' |
H5'1 |
H5'3 |
255.0 |
240.1 |
H5'2 |
C5' |
H5'1 |
H5'3 |
105.0 |
120.1 |
O4' |
C5' |
H5'2 |
H5'1 |
234.7 |
240.0 |
O4' |
C5' |
H5'2 |
H5'3 |
125.3 |
120.0 |
H5'1 |
C5' |
H5'2 |
H5'3 |
250.6 |
239.9 |
O4' |
C5' |
H5'3 |
H5'1 |
105.0 |
119.9 |
O4' |
C5' |
H5'3 |
H5'2 |
210.0 |
240.0 |
H5'1 |
C5' |
H5'3 |
H5'2 |
105.0 |
120.1 |
C6' |
C7' |
H7'1 |
H7'2 |
132.2 |
120.0 |
C6' |
C7' |
H7'1 |
H7'3 |
246.1 |
240.0 |
H7'2 |
C7' |
H7'1 |
H7'3 |
113.9 |
119.9 |
C6' |
C7' |
H7'2 |
H7'1 |
234.7 |
240.0 |
C6' |
C7' |
H7'2 |
H7'3 |
125.3 |
120.0 |
H7'1 |
C7' |
H7'2 |
H7'3 |
250.5 |
240.1 |
C6' |
C7' |
H7'3 |
H7'1 |
113.9 |
120.0 |
C6' |
C7' |
H7'3 |
H7'2 |
227.8 |
240.0 |
H7'1 |
C7' |
H7'3 |
H7'2 |
113.9 |
119.9 |