PDB Chemical Component 1TB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1TB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C5 1.423 1.384
C4 C3 1.416 1.384
C4 H4 1.103 1.080
C5 C6 1.414 1.379
C5 H5 1.103 1.080
C6 C1 1.430 1.396
C6 H6 1.103 1.080
C1 C2 1.473 1.397
C1 C11 1.551 1.477
C2 C3 1.421 1.380
C2 S7 1.823 1.762
C3 H3 1.103 1.079
C11 O12 1.409 1.347
C11 O11 1.246 1.216
O12 C13 1.393 1.452
C13 H131 1.115 1.090
C13 H132 1.115 1.090
C13 H133 1.115 1.089
S7 N8 1.468 1.656
S7 O7A 1.480 1.421
S7 O7B 1.457 1.421
N8 C9 1.409 1.348
N8 HN8 1.020 0.970
C9 O9 1.243 1.216
C9 N10 1.392 1.347
N10 C2' 1.396 1.386
N10 C10 1.450 1.465
C2' N1' 1.446 1.330
C2' N3' 1.409 1.328
N1' C6' 1.421 1.322
C6' N5' 1.404 1.322
C6' C7' 1.527 1.506
N5' C4' 1.420 1.329
C4' N3' 1.434 1.327
C4' O4' 1.400 1.353
C10 H101 1.115 1.090
C10 H102 1.115 1.090
C10 H103 1.115 1.090
O4' C5' 1.416 1.429
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
C5' H5'3 1.115 1.090
C7' H7'1 1.115 1.091
C7' H7'2 1.115 1.090
C7' H7'3 1.115 1.090

Bond Angles for 1TB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C4 C3 121.0 120.3
C5 C4 H4 119.8 119.9
C4 C5 C6 119.9 120.2
C4 C5 H5 120.4 119.9
C3 C4 H4 119.2 119.8
C4 C3 C2 120.9 120.1
C4 C3 H3 119.4 120.0
C6 C5 H5 119.7 119.9
C5 C6 C1 120.0 119.8
C5 C6 H6 119.4 120.1
C1 C6 H6 120.5 120.1
C6 C1 C2 120.2 119.7
C6 C1 C11 116.4 120.1
C2 C1 C11 123.4 120.1
C1 C2 C3 117.9 119.8
C1 C2 S7 123.6 120.1
C1 C11 O12 115.6 120.0
C1 C11 O11 121.2 120.0
C3 C2 S7 118.5 120.1
C2 C3 H3 119.7 119.9
C2 S7 N8 115.6 107.4
C2 S7 O7A 108.1 105.7
C2 S7 O7B 107.6 105.8
O12 C11 O11 123.2 120.0
C11 O12 C13 119.7 120.1
O12 C13 H131 108.5 109.5
O12 C13 H132 119.7 109.5
O12 C13 H133 108.5 109.5
H131 C13 H132 108.6 109.5
H131 C13 H133 101.5 109.5
H132 C13 H133 108.6 109.5
N8 S7 O7A 108.3 105.8
N8 S7 O7B 106.6 105.8
S7 N8 C9 126.8 120.0
S7 N8 HN8 106.1 120.0
O7A S7 O7B 110.6 125.4
C9 N8 HN8 106.1 120.0
N8 C9 O9 120.4 120.0
N8 C9 N10 118.6 120.0
O9 C9 N10 121.0 120.0
C9 N10 C2' 127.3 120.0
C9 N10 C10 119.9 120.0
C2' N10 C10 112.9 120.0
N10 C2' N1' 121.7 120.0
N10 C2' N3' 117.9 120.1
N10 C10 H101 108.5 109.5
N10 C10 H102 119.9 109.5
N10 C10 H103 108.5 109.5
N1' C2' N3' 120.4 119.9
C2' N1' C6' 120.6 120.0
C2' N3' C4' 119.9 119.9
N1' C6' N5' 117.1 120.2
N1' C6' C7' 120.5 119.9
N5' C6' C7' 122.5 119.9
C6' N5' C4' 124.4 120.1
C6' C7' H7'1 108.3 109.5
C6' C7' H7'2 120.5 109.5
C6' C7' H7'3 108.3 109.5
N5' C4' N3' 117.7 119.9
N5' C4' O4' 122.1 120.0
N3' C4' O4' 120.2 120.0
C4' O4' C5' 143.0 106.8
H101 C10 H102 108.5 109.4
H101 C10 H103 101.5 109.5
H102 C10 H103 108.5 109.5
O4' C5' H5'1 101.0 109.4
O4' C5' H5'2 143.0 109.5
O4' C5' H5'3 101.0 109.4
H5'1 C5' H5'2 100.9 109.5
H5'1 C5' H5'3 106.6 109.5
H5'2 C5' H5'3 100.9 109.5
H7'1 C7' H7'2 108.3 109.4
H7'1 C7' H7'3 101.7 109.4
H7'2 C7' H7'3 108.3 109.5

Torsion Angles for 1TB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C4 C5 H4 180.0 180.1
C5 C4 C3 C2 359.9 359.7
C5 C4 C3 H3 179.9 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 C1 0.0 360.0
C4 C5 C6 H6 180.0 180.0
C5 C4 C3 H4 180.0 179.9
C3 C4 C5 C6 0.0 0.0
C3 C4 C5 H5 180.0 180.1
C1 C2 C3 C4 0.0 0.6
C4 C3 C2 S7 180.1 180.0
C2 C3 C4 H3 180.0 179.7
C5 C4 H4 C3 180.0 180.1
H4 C4 C5 C6 180.0 179.9
H4 C4 C5 H5 0.0 360.0
H4 C4 C3 C2 179.9 179.8
H4 C4 C3 H3 359.9 0.1
C6 C5 C4 C3 0.0 0.0
C6 C5 C4 H4 180.0 179.9
C4 C5 C6 H5 180.0 180.0
C1 C6 C5 H6 180.0 180.0
C5 C6 C1 C2 359.9 0.2
C5 C6 C1 C11 179.9 180.0
H5 C5 C4 C3 180.0 180.1
H5 C5 C4 H4 0.0 360.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 C1 180.0 180.0
H5 C5 C6 H6 0.0 0.0
C1 C6 C5 H5 180.0 180.0
C5 C6 C1 H6 180.0 180.0
C2 C1 C6 C11 180.0 180.3
C6 C1 C2 C3 0.0 359.5
C6 C1 C2 S7 180.0 180.0
C6 C1 C11 O12 75.2 1.8
C6 C1 C11 O11 254.0 181.8
H6 C6 C5 H5 0.0 0.0
C5 C6 H6 C1 180.0 180.0
H6 C6 C1 C2 179.9 180.2
H6 C6 C1 C11 359.9 359.9
C4 C3 C2 C1 0.0 0.6
C2 C1 C6 H6 179.9 180.2
C6 C1 C2 C11 180.0 179.7
C2 C1 C11 O12 255.2 181.5
C2 C1 C11 O11 74.0 1.5
C3 C2 C1 S7 180.0 179.4
C1 C2 C3 H3 180.0 180.3
C1 C2 S7 N8 28.9 59.6
C1 C2 S7 O7A 150.4 172.2
C1 C2 S7 O7B 269.9 307.0
C11 C1 C6 H6 359.9 359.9
C6 C1 C11 C2 180.0 180.3
C11 C1 C2 C3 180.1 179.7
C11 C1 C2 S7 0.0 0.3
O12 C11 C1 O11 181.2 180.0
C1 C11 O12 C13 212.8 185.1
C2 C3 C4 H4 179.9 179.8
C4 C3 C2 H3 180.0 180.3
C3 C2 C1 C11 180.1 179.7
C1 C2 C3 S7 180.0 180.6
C3 C2 S7 N8 208.9 240.1
C3 C2 S7 O7A 330.4 352.7
C3 C2 S7 O7B 89.9 127.5
S7 C2 C1 C11 0.0 0.3
C1 C2 S7 C3 180.0 179.4
S7 C2 C3 H3 0.1 359.7
N8 S7 C2 O7A 238.5 247.4
N8 S7 C2 O7B 119.0 112.6
C2 S7 N8 C9 60.9 61.5
C2 S7 N8 HN8 295.7 241.5
O7A S7 C2 O7B 240.5 225.2
H3 C3 C4 H4 359.9 0.1
C4 C3 H3 C2 180.0 179.7
H3 C3 C2 S7 0.1 359.7
C1 C11 O12 O11 178.8 180.0
C11 O12 C13 H131 54.7 55.0
C11 O12 C13 H132 180.0 175.0
C11 O12 C13 H133 305.3 295.0
C1 C11 O11 O12 181.3 180.0
O11 C11 O12 C13 34.0 5.1
C13 O12 C11 O11 34.0 5.1
H131 C13 O12 H132 234.8 240.0
H131 C13 O12 H133 109.5 120.0
H132 C13 O12 H133 234.7 240.0
O12 C13 H131 H132 131.5 120.0
O12 C13 H131 H133 245.8 240.0
H132 C13 H131 H133 114.3 120.0
O12 C13 H132 H131 234.8 240.0
O12 C13 H132 H133 125.3 120.0
H131 C13 H132 H133 250.5 240.0
O12 C13 H133 H131 114.2 120.0
O12 C13 H133 H132 228.4 240.0
H131 C13 H133 H132 114.2 120.0
C2 S7 N8 O7A 121.4 112.6
C2 S7 N8 O7B 240.4 247.4
O7A S7 N8 O7B 119.1 134.8
C9 N8 S7 HN8 125.3 180.0
S7 N8 C9 O9 359.8 5.7
S7 N8 C9 N10 180.6 185.8
C2 S7 O7A N8 234.1 246.2
C2 S7 O7A O7B 117.6 123.1
N8 S7 O7A O7B 243.5 236.9
O7A S7 N8 C9 299.6 308.9
O7A S7 N8 HN8 174.3 128.9
C2 S7 O7B N8 124.6 113.8
C2 S7 O7B O7A 242.1 236.9
N8 S7 O7B O7A 117.6 123.1
O7B S7 N8 C9 180.5 174.1
O7B S7 N8 HN8 55.3 354.1
C9 N8 S7 O7A 299.6 308.9
C9 N8 S7 O7B 180.5 174.1
S7 N8 C9 HN8 234.8 180.0
O9 C9 N8 N10 179.1 179.9
N8 C9 N10 C2' 179.1 185.7
N8 C9 N10 C10 359.5 5.7
HN8 N8 S7 O7A 174.3 128.9
HN8 N8 S7 O7B 55.3 354.1
S7 N8 HN8 C9 137.1 180.0
HN8 N8 C9 O9 125.0 185.7
HN8 N8 C9 N10 305.9 5.8
O9 C9 N8 HN8 125.0 185.7
N8 C9 O9 N10 180.9 180.1
O9 C9 N10 C2' 359.9 5.8
O9 C9 N10 C10 180.4 185.8
N10 C9 N8 HN8 305.9 5.8
N8 C9 N10 O9 179.1 179.9
C2' N10 C9 C10 179.5 180.0
C9 N10 C2' N1' 180.4 185.2
C9 N10 C2' N3' 0.3 5.0
C9 N10 C10 H101 54.7 4.7
C9 N10 C10 H102 180.0 124.6
C9 N10 C10 H103 305.3 244.7
C9 N10 C2' C10 180.4 180.0
C2' N10 C10 H101 235.1 184.6
C2' N10 C10 H102 0.4 304.6
C2' N10 C10 H103 125.7 64.6
N1' C2' N10 N3' 180.0 180.2
N10 C2' N1' C6' 179.9 180.0
N10 C2' N3' C4' 180.1 179.8
C9 N10 C10 C2' 179.6 180.0
C10 N10 C2' N1' 359.9 5.3
C10 N10 C2' N3' 179.9 185.1
H101 C10 N10 H102 234.7 240.0
H101 C10 N10 H103 109.5 120.0
H102 C10 N10 H103 234.7 240.0
N1' C2' N10 C10 359.9 5.3
N10 C2' N1' N3' 180.0 179.8
N1' C2' N3' C4' 0.0 359.6
C2' N1' C6' N5' 359.9 360.0
C2' N1' C6' C7' 180.3 180.0
N3' C2' N10 C10 179.9 185.1
N10 C2' N3' N1' 180.0 180.2
N3' C2' N1' C6' 359.9 0.2
N5' C4' N3' C2' 0.1 0.5
C2' N3' C4' O4' 180.4 180.2
C6' N1' C2' N3' 359.9 0.2
N5' C6' N1' C7' 179.6 179.9
N1' C6' N5' C4' 0.2 0.0
N1' C6' C7' H7'1 54.7 90.0
N1' C6' C7' H7'2 180.0 210.0
N1' C6' C7' H7'3 305.3 330.0
N1' C6' N5' C7' 180.4 180.1
N5' C6' C7' H7'1 235.1 270.0
N5' C6' C7' H7'2 0.4 30.0
N5' C6' C7' H7'3 125.7 150.1
C6' N5' C4' N3' 359.7 359.7
C6' N5' C4' O4' 179.4 180.0
N1' C6' C7' N5' 179.6 179.9
C7' C6' N5' C4' 179.8 180.0
H7'1 C7' C6' H7'2 234.7 240.0
H7'1 C7' C6' H7'3 109.4 120.0
H7'2 C7' C6' H7'3 234.7 240.0
C2' N3' C4' N5' 0.1 0.5
C4' N5' C6' C7' 179.8 180.0
N3' C4' N5' O4' 180.3 179.7
N5' C4' O4' C5' 0.2 0.0
N5' C4' N3' O4' 179.7 180.3
N3' C4' O4' C5' 179.9 180.3
N5' C4' O4' N3' 180.3 179.7
C4' O4' C5' H5'1 54.7 300.0
C4' O4' C5' H5'2 180.0 60.0
C4' O4' C5' H5'3 305.3 180.0
N10 C10 H101 H102 131.7 120.0
N10 C10 H101 H103 245.8 240.0
H102 C10 H101 H103 114.1 120.0
N10 C10 H102 H101 234.7 240.0
N10 C10 H102 H103 125.3 120.0
H101 C10 H102 H103 250.6 240.0
N10 C10 H103 H101 114.2 120.0
N10 C10 H103 H102 228.3 240.0
H101 C10 H103 H102 114.1 120.0
H5'1 C5' O4' H5'2 234.7 240.0
H5'1 C5' O4' H5'3 109.5 119.9
H5'2 C5' O4' H5'3 234.7 239.9
O4' C5' H5'1 H5'2 150.0 120.0
O4' C5' H5'1 H5'3 255.0 240.1
H5'2 C5' H5'1 H5'3 105.0 120.1
O4' C5' H5'2 H5'1 234.7 240.0
O4' C5' H5'2 H5'3 125.3 120.0
H5'1 C5' H5'2 H5'3 250.6 239.9
O4' C5' H5'3 H5'1 105.0 119.9
O4' C5' H5'3 H5'2 210.0 240.0
H5'1 C5' H5'3 H5'2 105.0 120.1
C6' C7' H7'1 H7'2 132.2 120.0
C6' C7' H7'1 H7'3 246.1 240.0
H7'2 C7' H7'1 H7'3 113.9 119.9
C6' C7' H7'2 H7'1 234.7 240.0
C6' C7' H7'2 H7'3 125.3 120.0
H7'1 C7' H7'2 H7'3 250.5 240.1
C6' C7' H7'3 H7'1 113.9 120.0
C6' C7' H7'3 H7'2 227.8 240.0
H7'1 C7' H7'3 H7'2 113.9 119.9