Atom Nomenclature for 1T6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1T6

Atom Name (V3) Atom Name (V2)
C13 C1
C18 C2
C17 C3
C16 C4
C15 C5
C19 C6
C20 C7
C21 C8
C22 C9
C23 C10
C24 C11
C11 C12
C12 C13
C27 C14
C1 C15
C2 C16
C3 C17
C4 C18
C5 C19
C6 C20
C7 C21
C8 C22
C9 C23
C10 C24
C14 C25
C25 C26
C26 C27
C28 C28
C29 C29
C30 C30
C31 C31
N32 N1
N33 N2
N34 N3
N35 N4
O36 O1
O37 O2
O38 O3
H51 H1
H53 H2
H49 H3
H50 H4
H39 H5
H40 H6
H41 H7
H42 H8
H43 H9
H44 H10
H45 H11
H46 H12
H47 H13
H48 H14
H52 H15
H54 H16
H55 H17
H56 H18
H59 H19
H58 H20
H57 H21
H60 H22
H61 H24
H63 H25
H64 H26
H65 H27
H66 H28
H62 H62