PDB Chemical Component 1SD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1SD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.431	1.429
C2	C3	1.529	1.532
C2	C1	1.531	1.530
C3	O3	1.430	1.429
C3	C4	1.529	1.532
C4	O4	1.430	1.429
C4	C5	1.530	1.531
C5	C6	1.530	1.530
C5	O5	1.436	1.429
C6	O6	1.429	1.429
O5	C1	1.437	1.429
C1	SAI	1.831	1.815
SAI	OAM	1.500	1.421
SAI	OAE	1.500	1.420
SAI	NAJ	1.630	1.656
O2	HO2	0.950	0.967
C2	H2	1.100	1.091
C3	H3	1.100	1.089
O3	HO3	0.950	0.967
C4	H4	1.101	1.091
O4	HO4	0.950	0.967
C5	H5	1.100	1.090
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O6	HO6	0.950	0.967
C1	H1	1.100	1.091
NAJ	HNAJ	1.000	0.970
NAJ	HNAA	1.000	0.970

Bond Angles for 1SD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	C2	C3	109.5	109.5
O2	C2	C1	109.8	109.5
C2	O2	HO2	109.5	114.0
O2	C2	H2	109.5	109.5
C3	C2	C1	110.3	109.2
C2	C3	O3	109.5	109.5
C2	C3	C4	109.5	109.0
C3	C2	H2	109.0	109.5
C2	C3	H3	109.4	109.6
C2	C1	O5	109.4	109.4
C2	C1	SAI	109.9	109.5
C1	C2	H2	108.7	109.6
C2	C1	H1	109.1	109.5
O3	C3	C4	109.2	109.5
O3	C3	H3	109.7	109.5
C3	O3	HO3	109.5	114.0
C3	C4	O4	109.3	109.5
C3	C4	C5	109.6	109.2
C4	C3	H3	109.7	109.7
C3	C4	H4	109.4	109.5
O4	C4	C5	109.2	109.5
O4	C4	H4	109.8	109.5
C4	O4	HO4	109.5	114.0
C4	C5	C6	109.6	109.5
C4	C5	O5	109.1	109.4
C5	C4	H4	109.5	109.6
C4	C5	H5	109.7	109.4
C6	C5	O5	109.7	109.5
C5	C6	O6	109.5	109.4
C6	C5	H5	109.1	109.5
C5	C6	H61	109.5	109.5
C5	C6	H62	109.5	109.5
C5	O5	C1	110.9	114.1
O5	C5	H5	109.6	109.5
O6	C6	H61	109.5	109.4
O6	C6	H62	109.5	109.5
C6	O6	HO6	109.5	114.0
O5	C1	SAI	108.8	109.5
O5	C1	H1	110.1	109.5
C1	SAI	OAM	109.2	110.5
C1	SAI	OAE	109.8	110.5
C1	SAI	NAJ	109.3	104.4
SAI	C1	H1	109.5	109.5
OAM	SAI	OAE	109.1	121.1
OAM	SAI	NAJ	109.4	104.2
OAE	SAI	NAJ	110.0	104.3
SAI	NAJ	HNAJ	109.5	120.0
SAI	NAJ	HNAA	109.5	120.0
H61	C6	H62	109.5	109.4
HNAJ	NAJ	HNAA	109.4	120.0

Torsion Angles for 1SD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	O2	C1	121.3	119.7
O2	C2	C3	O3	66.1	63.3
O2	C2	C3	C4	185.7	183.1
C3	C2	O2	H2	240.5	239.9
O2	C2	C3	H3	305.9	303.1
O2	C2	C1	O5	178.5	177.5
O2	C2	C1	SAI	298.0	297.5
C1	C2	O2	H2	119.3	120.2
O2	C2	C1	H1	58.0	57.5
O2	C2	C3	C1	239.0	240.1
C3	C2	O2	HO2	320.2	300.0
O2	C2	C3	H2	119.7	120.1
C3	C2	C1	O5	57.7	57.6
C3	C2	C1	SAI	177.2	177.6
C1	C2	C3	H2	240.7	240.0
C3	C2	C1	H1	297.2	297.6
O3	C3	C2	C4	240.4	240.2
O3	C3	C2	H3	120.2	120.2
C2	C3	O3	HO3	49.6	180.1
C2	C3	C4	O4	294.4	297.1
C2	C3	C4	C5	54.1	57.0
C4	C3	C2	H3	239.8	240.0
C2	C3	C4	H4	174.2	177.0
O2	C2	C1	C3	120.8	119.9
C1	C2	O2	HO2	199.0	180.3
O2	C2	C1	H2	240.2	239.9
C1	C2	C3	O3	187.1	183.2
C1	C2	C3	C4	306.7	303.0
C3	C2	C1	H2	119.4	119.9
C1	C2	C3	H3	66.9	63.0
C5	O5	C1	C2	295.8	298.8
O5	C1	C2	SAI	240.6	240.0
O5	C1	C2	H1	120.5	120.0
C2	C1	SAI	OAM	170.4	296.6
C2	C1	SAI	OAE	290.0	73.4
C2	C1	SAI	NAJ	50.8	185.0
SAI	C1	C2	H1	239.9	240.0
O3	C3	C2	C1	187.1	183.2
C2	C3	O3	C4	119.8	119.5
O3	C3	C2	H2	306.3	303.2
C2	C3	O3	H3	240.0	239.8
O3	C3	C4	O4	54.2	56.9
O3	C3	C4	C5	173.9	176.8
C4	C3	O3	H3	120.2	120.3
O3	C3	C4	H4	294.0	296.8
C4	C3	C2	C1	306.7	303.0
C2	C3	C4	O3	240.2	240.2
C4	C3	C2	H2	65.9	63.0
C2	C3	C4	H3	120.0	119.9
O3	C3	C4	H3	239.8	239.8
C4	C3	O3	HO3	289.8	60.5
O4	C4	C3	C5	240.3	240.1
O4	C4	C3	H4	120.3	120.1
C3	C4	O4	HO4	106.1	180.0
C3	C4	C5	C6	180.2	182.4
C3	C4	C5	O5	300.4	302.4
C5	C4	C3	H4	239.9	240.0
C3	C4	C5	H5	60.5	62.4
C3	C4	O4	C5	119.9	119.7
O4	C4	C3	H3	174.4	177.2
C3	C4	O4	H4	240.0	239.9
O4	C4	C5	C6	299.9	302.3
O4	C4	C5	O5	60.1	62.3
C5	C4	O4	H4	120.1	120.2
O4	C4	C5	H5	180.2	182.3
C3	C4	C5	O4	240.3	240.1
C5	C4	C3	H3	294.1	297.0
C3	C4	C5	H4	120.0	119.9
O4	C4	C5	H4	239.7	239.8
C5	C4	O4	HO4	346.2	60.3
C6	C5	C4	O5	239.8	240.0
C4	C5	C6	O6	60.2	185.0
C6	C5	C4	H5	119.8	120.1
C4	C5	C6	H61	180.2	305.0
C4	C5	C6	H62	300.2	65.0
C4	C5	O5	C1	65.3	61.2
O5	C5	C4	H5	239.9	240.0
C4	C5	C6	O5	119.8	119.9
C6	C5	C4	H4	60.2	62.5
C4	C5	C6	H5	239.9	240.0
C6	C5	O5	C1	185.4	181.1
O5	C5	C6	H5	120.1	120.1
O6	C6	C5	H61	240.0	240.1
O6	C6	C5	H62	120.0	120.1
C5	C6	O6	HO6	106.3	180.0
H61	C6	C5	H62	240.0	240.0
C2	C1	O5	C5	295.8	298.8
C4	C5	O5	C6	239.9	240.0
O5	C5	C4	H4	180.4	182.5
C4	C5	O5	H5	120.1	119.9
O5	C5	C6	O6	300.4	65.1
C6	C5	O5	H5	240.2	239.9
O5	C5	C6	H61	60.4	185.1
O5	C5	C6	H62	180.4	305.1
C5	O5	C1	SAI	175.7	178.8
C5	O5	C1	H1	55.6	58.8
O6	C6	C5	O5	300.4	65.1
O6	C6	C5	H5	180.3	305.0
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.0	239.9
H61	C6	O6	H62	120.0	120.0
C2	C1	O5	SAI	120.1	120.0
O5	C1	C2	H2	298.3	297.7
C2	C1	O5	H1	240.2	240.0
C1	O5	C5	H5	305.1	301.2
O5	C1	SAI	OAM	290.1	56.5
O5	C1	SAI	OAE	49.8	193.4
O5	C1	SAI	NAJ	170.5	305.0
SAI	C1	O5	H1	120.1	120.0
C2	C1	SAI	O5	240.3	240.0
SAI	C1	C2	H2	57.7	57.7
C2	C1	SAI	H1	119.8	120.0
O5	C1	SAI	H1	239.5	240.0
OAM	SAI	C1	OAE	240.3	223.2
OAM	SAI	C1	NAJ	119.6	111.6
OAE	SAI	C1	NAJ	239.3	248.4
C1	SAI	NAJ	HNAJ	322.8	150.1
C1	SAI	NAJ	HNAA	82.8	330.0
C1	SAI	OAM	OAE	120.1	131.6
C1	SAI	OAM	NAJ	240.4	248.3
OAM	SAI	C1	H1	50.6	176.5
OAE	SAI	OAM	NAJ	120.4	116.8
OAM	SAI	NAJ	HNAJ	203.3	34.0
OAM	SAI	NAJ	HNAA	323.2	213.9
C1	SAI	OAE	OAM	240.3	228.4
C1	SAI	OAE	NAJ	120.3	111.7
OAE	SAI	C1	H1	170.2	313.4
OAM	SAI	OAE	NAJ	240.0	243.3
OAE	SAI	NAJ	HNAJ	83.4	266.1
OAE	SAI	NAJ	HNAA	203.4	86.0
C1	SAI	NAJ	OAM	119.5	116.0
C1	SAI	NAJ	OAE	239.4	243.9
NAJ	SAI	C1	H1	291.0	65.0
OAM	SAI	NAJ	OAE	119.9	127.9
HNAJ	NAJ	SAI	HNAA	240.0	180.1
HO2	O2	C2	C3	320.2	300.0
HO2	O2	C2	C1	199.0	180.3
HO2	O2	C2	H2	79.7	60.1
O2	C2	H2	C3	240.2	239.9
O2	C2	H2	C1	120.0	120.2
H2	C2	O2	HO2	79.7	60.1
C3	C2	H2	C1	239.8	240.3
H2	C2	C3	O3	306.3	303.2
H2	C2	C3	C4	65.9	63.0
H2	C2	C3	H3	186.1	183.0
H2	C2	C1	O5	298.3	297.7
H2	C2	C1	SAI	57.7	57.7
H2	C2	C1	H1	177.8	177.7
H3	C3	C2	C1	66.9	63.0
C2	C3	H3	O3	120.1	120.2
C2	C3	H3	C4	239.9	240.4
H3	C3	C2	H2	186.1	183.0
O3	C3	H3	C4	119.9	120.2
H3	C3	O3	HO3	169.6	300.2
H3	C3	C4	O4	174.4	177.2
H3	C3	C4	C5	294.1	297.0
H3	C3	C4	H4	54.1	57.0
HO3	O3	C3	C4	289.8	60.5
HO3	O3	C3	H3	169.6	300.2
C3	C4	H4	O4	119.9	120.1
C3	C4	H4	C5	239.9	240.3
H4	C4	C3	H3	54.1	57.0
O4	C4	H4	C5	119.9	120.1
H4	C4	O4	HO4	226.2	300.1
H4	C4	C5	C6	60.2	62.5
H4	C4	C5	O5	180.4	182.5
H4	C4	C5	H5	300.5	302.4
HO4	O4	C4	C5	346.2	60.3
HO4	O4	C4	H4	226.2	300.1
C4	C5	H5	C6	120.0	120.0
C4	C5	H5	O5	240.2	240.1
H5	C5	C4	H4	300.5	302.4
C6	C5	H5	O5	120.2	120.1
H5	C5	C6	O6	180.3	305.0
H5	C5	C6	H61	300.3	65.0
H5	C5	C6	H62	60.3	185.0
H5	C5	O5	C1	305.1	301.2
H61	C6	C5	O5	60.4	185.1
C5	C6	H61	O6	240.0	240.0
H61	C6	C5	H5	300.3	65.0
C5	C6	H61	H62	120.0	120.0
O6	C6	H61	H62	240.0	240.0
H61	C6	O6	HO6	346.3	60.0
H62	C6	C5	O5	180.4	305.1
C5	C6	H62	O6	120.0	120.0
H62	C6	C5	H5	60.3	185.0
C5	C6	H62	H61	240.0	240.0
O6	C6	H62	H61	120.0	120.0
H62	C6	O6	HO6	226.3	300.0
HO6	O6	C6	H61	346.3	60.0
HO6	O6	C6	H62	226.3	300.0
C2	C1	H1	O5	120.0	119.9
C2	C1	H1	SAI	239.7	240.0
H1	C1	C2	H2	177.8	177.7
O5	C1	H1	SAI	119.7	120.0
H1	C1	SAI	OAM	50.6	176.5
H1	C1	SAI	OAE	170.2	313.4
H1	C1	SAI	NAJ	291.0	65.0
SAI	NAJ	HNAJ	HNAA	120.0	179.9
SAI	NAJ	HNAA	HNAJ	240.0	180.1