PDB Chemical Component 1RY

Ideal Model

Chemical Description

Name [[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Formula C8 H13 F N3 O12 P3 S
Formal charge 0
Molecular weight 487.186 g/mol
Component type NON-POLYMER

Chemical features

Atom count 41
Chiral atom count 2
Chiral atoms CAW CAX
Bond count 42
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1F)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1F)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=C(C(=NC2=O)N)F
InChI descriptor InChI=1S/C8H13FN3O12P3S/c9-4-1-12(8(13)11-7(4)10)5-3-28-6(22-5)2-21-26(17,18)24-27(19,20)23-25(14,15)16/h1,5-6H,2-3H2,(H,17,18)(H,19,20)(H2,10,11,13)(H2,14,15,16)/t5-,6+/m0/s1
InChIKey descriptor WIEOLFZNMKSGEX-NTSWFWBYSA-N

Status Information

Last modified 2014-07-11
Created 2013-05-14
Release status REL
Model PDB code 4K4I
Processing site RCSB