PDB Chemical Component 1RY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1RY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAG |
PAZ |
1.504 |
1.480 |
| FAJ |
CAU |
1.341 |
1.350 |
| OAF |
PAZ |
1.503 |
1.610 |
| OAH |
PBA |
1.511 |
1.480 |
| PAZ |
OAC |
1.508 |
1.609 |
| PAZ |
OAQ |
1.607 |
1.610 |
| NAA |
CAT |
1.354 |
1.377 |
| OAD |
PBA |
1.513 |
1.610 |
| CAU |
CAT |
1.381 |
1.412 |
| CAU |
CAK |
1.387 |
1.356 |
| PBA |
OAR |
1.614 |
1.610 |
| PBA |
OAO |
1.615 |
1.609 |
| OAR |
PBB |
1.611 |
1.610 |
| OAQ |
PBB |
1.608 |
1.611 |
| CAT |
NAN |
1.346 |
1.326 |
| CAK |
NAY |
1.338 |
1.364 |
| PBB |
OAE |
1.499 |
1.480 |
| PBB |
OAI |
1.503 |
1.610 |
| OAO |
CAL |
1.425 |
1.429 |
| NAN |
CAV |
1.335 |
1.331 |
| NAY |
CAV |
1.339 |
1.346 |
| NAY |
CAX |
1.454 |
1.466 |
| CAV |
OAB |
1.340 |
1.220 |
| SAS |
CAM |
1.747 |
1.844 |
| SAS |
CAW |
1.772 |
1.841 |
| CAL |
CAW |
1.530 |
1.530 |
| CAM |
CAX |
1.522 |
1.552 |
| CAX |
OAP |
1.409 |
1.417 |
| OAP |
CAW |
1.431 |
1.440 |
| OAC |
H1 |
0.950 |
0.967 |
| OAF |
H2 |
0.950 |
0.967 |
| OAI |
H3 |
0.950 |
0.967 |
| OAD |
H4 |
0.950 |
0.967 |
| CAL |
H5 |
1.100 |
1.090 |
| CAL |
H6 |
1.100 |
1.090 |
| CAW |
H7 |
1.100 |
1.090 |
| CAM |
H8 |
1.100 |
1.090 |
| CAM |
H9 |
1.100 |
1.090 |
| CAX |
H10 |
1.100 |
1.089 |
| CAK |
H11 |
1.080 |
1.080 |
| NAA |
H12 |
1.000 |
0.970 |
| NAA |
H13 |
1.000 |
0.970 |
Bond Angles for 1RY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAG |
PAZ |
OAQ |
106.0 |
109.4 |
| FAJ |
CAU |
CAT |
120.0 |
120.6 |
| OAF |
PAZ |
OAQ |
107.0 |
109.5 |
| OAH |
PBA |
OAO |
106.8 |
109.4 |
| PAZ |
OAC |
H1 |
109.5 |
114.0 |
| PAZ |
OAQ |
PBB |
124.5 |
134.0 |
| OAD |
PBA |
OAO |
114.0 |
109.5 |
| CAU |
CAT |
NAN |
119.4 |
119.6 |
| CAU |
CAK |
H11 |
120.3 |
120.4 |
| PBA |
OAO |
CAL |
124.7 |
123.0 |
| OAQ |
PBB |
OAE |
110.9 |
109.5 |
| OAQ |
PBB |
OAI |
105.1 |
109.5 |
| CAK |
NAY |
CAV |
119.8 |
120.3 |
| OAI |
PBB |
OAE |
120.1 |
109.5 |
| PBB |
OAI |
H3 |
109.5 |
114.0 |
| OAO |
CAL |
CAW |
108.1 |
109.5 |
| OAO |
CAL |
H5 |
109.8 |
109.5 |
| OAO |
CAL |
H6 |
109.8 |
109.5 |
| NAY |
CAV |
OAB |
120.4 |
119.4 |
| NAY |
CAX |
H10 |
109.2 |
108.5 |
| SAS |
CAM |
CAX |
108.0 |
100.7 |
| SAS |
CAM |
H8 |
109.8 |
111.1 |
| SAS |
CAM |
H9 |
109.8 |
111.2 |
| SAS |
CAW |
H7 |
107.2 |
110.8 |
| CAW |
CAL |
H5 |
109.8 |
109.4 |
| CAW |
CAL |
H6 |
109.8 |
109.4 |
| CAL |
CAW |
H7 |
110.0 |
110.7 |
| CAX |
CAM |
H8 |
109.8 |
111.0 |
| CAX |
CAM |
H9 |
109.8 |
111.3 |
| CAM |
CAX |
H10 |
108.3 |
108.7 |
| OAP |
CAW |
H7 |
111.5 |
110.8 |
| H5 |
CAL |
H6 |
109.5 |
109.4 |
| H8 |
CAM |
H9 |
109.5 |
111.1 |
| H12 |
NAA |
H13 |
120.0 |
120.0 |
Torsion Angles for 1RY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAF |
PAZ |
OAG |
OAQ |
243.6 |
240.0 |
| OAG |
PAZ |
OAC |
H1 |
360.0 |
180.0 |
| OAG |
PAZ |
OAQ |
PBB |
232.5 |
45.0 |
| FAJ |
CAU |
CAT |
NAN |
179.7 |
180.3 |
| FAJ |
CAU |
CAK |
H11 |
1.2 |
0.1 |
| OAG |
PAZ |
OAF |
OAQ |
115.8 |
119.9 |
| OAF |
PAZ |
OAC |
H1 |
230.5 |
59.9 |
| OAF |
PAZ |
OAQ |
PBB |
352.4 |
165.0 |
| OAD |
PBA |
OAH |
OAO |
228.0 |
240.0 |
| OAH |
PBA |
OAO |
CAL |
201.7 |
305.0 |
| OAQ |
PAZ |
OAC |
H1 |
115.4 |
299.9 |
| PAZ |
OAQ |
PBB |
OAE |
315.5 |
45.0 |
| PAZ |
OAQ |
PBB |
OAI |
184.4 |
285.0 |
| OAH |
PBA |
OAD |
OAO |
128.9 |
120.0 |
| OAD |
PBA |
OAO |
CAL |
337.2 |
65.0 |
| CAT |
CAU |
CAK |
H11 |
180.7 |
180.0 |
| CAU |
CAK |
NAY |
CAV |
358.8 |
0.0 |
| PBA |
OAO |
CAL |
CAW |
145.3 |
180.0 |
| PBA |
OAO |
CAL |
H5 |
265.1 |
300.0 |
| PBA |
OAO |
CAL |
H6 |
25.6 |
60.0 |
| OAR |
PBB |
OAI |
H3 |
234.2 |
60.0 |
| OAI |
PBB |
OAQ |
OAE |
228.8 |
240.0 |
| OAQ |
PBB |
OAI |
H3 |
125.6 |
300.0 |
| CAK |
NAY |
CAV |
OAB |
180.8 |
179.8 |
| CAK |
NAY |
CAX |
H10 |
195.4 |
238.3 |
| OAQ |
PBB |
OAE |
OAI |
237.1 |
240.0 |
| OAE |
PBB |
OAI |
H3 |
360.0 |
180.0 |
| OAQ |
PBB |
OAI |
OAE |
125.6 |
120.0 |
| CAW |
CAL |
OAO |
H5 |
240.2 |
240.0 |
| CAW |
CAL |
OAO |
H6 |
119.8 |
120.0 |
| OAO |
CAL |
CAW |
H7 |
170.5 |
180.7 |
| H5 |
CAL |
OAO |
H6 |
239.5 |
240.0 |
| CAU |
CAT |
NAN |
CAV |
359.3 |
359.3 |
| CAV |
NAY |
CAX |
H10 |
17.3 |
58.1 |
| NAY |
CAX |
CAM |
H8 |
135.3 |
143.5 |
| NAY |
CAX |
CAM |
H9 |
14.9 |
19.2 |
| CAM |
CAX |
NAY |
H10 |
242.0 |
241.9 |
| CAM |
SAS |
CAW |
H7 |
271.4 |
274.3 |
| CAX |
CAM |
SAS |
H8 |
240.2 |
242.3 |
| CAX |
CAM |
SAS |
H9 |
119.8 |
118.0 |
| SAS |
CAM |
CAX |
H10 |
136.5 |
143.3 |
| H8 |
CAM |
SAS |
H9 |
239.5 |
235.7 |
| SAS |
CAW |
CAL |
H5 |
169.0 |
184.0 |
| SAS |
CAW |
CAL |
H6 |
48.5 |
64.1 |
| CAL |
CAW |
SAS |
H7 |
240.0 |
236.7 |
| OAP |
CAW |
SAS |
H7 |
120.4 |
118.3 |
| OAO |
CAL |
CAW |
H5 |
119.8 |
120.0 |
| OAO |
CAL |
CAW |
H6 |
240.2 |
240.0 |
| SAS |
CAW |
CAL |
H7 |
118.3 |
123.3 |
| OAP |
CAW |
CAL |
H7 |
237.4 |
236.7 |
| H5 |
CAL |
CAW |
H6 |
120.4 |
119.9 |
| NAY |
CAX |
CAM |
H10 |
118.6 |
117.9 |
| SAS |
CAM |
CAX |
H8 |
119.8 |
117.7 |
| SAS |
CAM |
CAX |
H9 |
240.2 |
242.0 |
| H8 |
CAM |
CAX |
H9 |
120.4 |
124.3 |
| CAX |
OAP |
CAW |
H7 |
90.0 |
93.5 |
| SAS |
CAW |
OAP |
H7 |
242.3 |
241.6 |
| OAP |
CAW |
CAL |
H5 |
288.1 |
297.3 |
| OAP |
CAW |
CAL |
H6 |
167.7 |
177.4 |
| CAL |
CAW |
OAP |
H7 |
121.7 |
123.3 |
| H2 |
OAF |
PAZ |
OAQ |
244.2 |
180.1 |
| H3 |
OAI |
PBB |
OAE |
360.0 |
180.0 |
| H4 |
OAD |
PBA |
OAO |
231.1 |
60.0 |
| OAO |
CAL |
H5 |
CAW |
241.3 |
240.0 |
| OAO |
CAL |
H5 |
H6 |
120.7 |
120.0 |
| CAW |
CAL |
H5 |
H6 |
239.4 |
240.1 |
| H5 |
CAL |
CAW |
H7 |
50.7 |
60.6 |
| OAO |
CAL |
H6 |
CAW |
118.7 |
120.0 |
| OAO |
CAL |
H6 |
H5 |
239.3 |
239.9 |
| CAW |
CAL |
H6 |
H5 |
120.6 |
119.9 |
| H6 |
CAL |
CAW |
H7 |
290.3 |
300.7 |
| H7 |
CAW |
CAL |
H5 |
50.7 |
60.6 |
| H7 |
CAW |
CAL |
H6 |
290.3 |
300.7 |
| SAS |
CAM |
H8 |
CAX |
241.3 |
248.8 |
| SAS |
CAM |
H8 |
H9 |
120.7 |
124.4 |
| CAX |
CAM |
H8 |
H9 |
239.3 |
235.5 |
| H8 |
CAM |
CAX |
H10 |
16.8 |
25.6 |
| SAS |
CAM |
H9 |
CAX |
118.7 |
111.4 |
| SAS |
CAM |
H9 |
H8 |
239.3 |
235.7 |
| CAX |
CAM |
H9 |
H8 |
120.7 |
124.3 |
| H9 |
CAM |
CAX |
H10 |
256.3 |
261.3 |
| H10 |
CAX |
CAM |
H8 |
16.8 |
25.6 |
| H10 |
CAX |
CAM |
H9 |
256.3 |
261.3 |
| H11 |
CAK |
NAY |
CAV |
178.7 |
180.0 |