PDB Chemical Component 1RN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1RN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.383 1.343
N1 C6 1.381 1.359
N1 C1' 1.466 1.465
C2 S2 1.231 1.712
C2 N3 1.376 1.344
N3 C4 1.387 1.350
C4 O4 1.229 1.217
C4 C5 1.426 1.472
C5 C6 1.335 1.381
C5 C3 1.396 1.470
C1' C2' 1.527 1.551
C1' O4' 1.424 1.443
O2' C2' 1.413 1.429
C2' C3' 1.504 1.549
O3' C3' 1.419 1.428
C3' C4' 1.518 1.541
C4' O4' 1.467 1.438
C4' C5' 1.506 1.530
C5' O5' 1.418 1.429
O5' P 1.592 1.611
P OP1 1.484 1.610
P OP2 1.487 1.479
C3 N2 1.347 1.296
N2 C7 1.229 1.464
C7 C1 1.308 1.508
C1 O2 1.253 1.207
C1 O1 1.251 1.343
C6 H1 1.080 1.080
C1' H2 1.101 1.091
O2' H3 0.950 0.967
C2' H4 1.100 1.089
O3' H5 0.950 0.967
C3' H6 1.100 1.090
C4' H7 1.100 1.090
C5' H8 1.100 1.089
C5' H9 1.100 1.089
OP1 H10 0.950 0.967
C3 H12 1.080 1.080
C7 H13 1.100 1.090
C7 H14 1.100 1.090
O1 H15 0.951 0.967
N3 H16 1.000 0.970
P OP3   1.610
OP3 H18   0.967

Bond Angles for 1RN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.1 121.5
C2 N1 C1' 117.9 119.2
N1 C2 S2 123.0 118.9
N1 C2 N3 114.5 122.1
C6 N1 C1' 121.0 119.3
N1 C6 C5 122.9 119.3
N1 C6 H1 118.5 120.3
N1 C1' C2' 114.7 110.6
N1 C1' O4' 109.1 110.6
N1 C1' H2 109.5 110.6
S2 C2 N3 122.5 118.9
C2 N3 C4 127.2 120.4
C2 N3 H16 116.4 119.8
N3 C4 O4 119.5 120.7
N3 C4 C5 114.8 118.6
C4 N3 H16 116.4 119.8
O4 C4 C5 125.7 120.8
C4 C5 C6 119.5 118.1
C4 C5 C3 120.1 121.0
C6 C5 C3 120.3 121.0
C5 C6 H1 118.6 120.3
C5 C3 N2 115.4 120.0
C5 C3 H12 122.3 120.0
C2' C1' O4' 104.7 103.5
C1' C2' O2' 103.6 110.9
C1' C2' C3' 101.2 102.1
C2' C1' H2 108.7 110.6
C1' C2' H4 107.2 110.9
C1' O4' C4' 110.0 107.0
O4' C1' H2 110.1 110.8
O2' C2' C3' 126.9 110.9
C2' O2' H3 109.5 114.0
O2' C2' H4 108.7 110.9
C2' C3' O3' 118.9 110.5
C2' C3' C4' 100.3 104.2
C3' C2' H4 107.5 111.0
C2' C3' H6 109.8 110.5
O3' C3' C4' 106.4 110.5
C3' O3' H5 109.5 114.0
O3' C3' H6 111.0 110.5
C3' C4' O4' 102.0 107.3
C3' C4' C5' 115.1 109.9
C4' C3' H6 109.6 110.6
C3' C4' H7 110.0 109.9
O4' C4' C5' 108.7 109.9
O4' C4' H7 110.7 109.9
C4' C5' O5' 110.3 109.4
C5' C4' H7 110.1 110.0
C4' C5' H8 109.2 109.5
C4' C5' H9 109.3 109.5
C5' O5' P 120.6 123.0
O5' C5' H8 109.3 109.5
O5' C5' H9 109.3 109.5
O5' P OP1 108.4 109.4
O5' P OP2 108.2 109.5
O5' P OP3   109.5
OP1 P OP2 119.5 109.5
P OP1 H10 109.5 114.0
OP1 P OP3   109.5
OP2 P OP3   109.5
C3 N2 C7 117.2 120.0
N2 C3 H12 122.3 120.0
N2 C7 C1 117.7 109.5
N2 C7 H13 107.4 109.5
N2 C7 H14 107.4 109.5
C7 C1 O2 116.9 120.0
C7 C1 O1 117.1 120.0
C1 C7 H13 107.4 109.4
C1 C7 H14 107.4 109.5
O2 C1 O1 125.7 120.0
C1 O1 H15 109.5 117.0
H8 C5' H9 109.5 109.5
H13 C7 H14 109.5 109.5
P OP3 H18   114.0

Torsion Angles for 1RN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 180.1 180.3
C2 N1 C6 C5 359.9 360.0
C2 N1 C6 H1 179.9 180.0
C2 N1 C1' C2' 112.8 85.6
C2 N1 C1' O4' 229.8 199.7
C2 N1 C1' H2 350.3 322.8
S2 C2 N1 N3 180.0 180.1
N1 C2 N3 C4 0.3 0.1
N1 C2 N3 H16 180.3 180.0
C2 N1 C6 C1' 179.9 179.7
C6 N1 C2 S2 179.6 180.0
C6 N1 C2 N3 359.6 360.0
C6 N1 C1' C2' 292.7 265.3
C6 N1 C1' O4' 49.7 19.4
C6 N1 C1' H2 170.2 142.5
C4 C5 C6 N1 0.7 0.0
N1 C6 C5 C3 180.6 180.0
C5 C6 N1 H1 180.0 180.0
C2 N1 C1' C6 180.1 180.3
C1' N1 C2 S2 359.5 359.7
C1' N1 C2 N3 179.5 179.6
C1' N1 C6 C5 180.0 180.3
C1' N1 C6 H1 360.0 0.3
C2' C1' N1 O4' 243.0 245.9
N1 C1' C2' O2' 19.0 37.4
N1 C1' C2' C3' 151.7 155.5
C2' C1' N1 H2 122.5 122.8
N1 C1' C2' H4 264.2 273.7
N1 C1' O4' C4' 230.9 201.5
O4' C1' N1 H2 239.5 236.9
S2 C2 N1 C6 179.6 180.0
S2 C2 N1 C1' 359.5 359.7
N1 C2 S2 N3 180.0 179.9
S2 C2 N3 C4 180.4 180.0
S2 C2 N3 H16 0.3 360.0
N3 C2 N1 C6 359.6 360.0
N3 C2 N1 C1' 179.5 179.6
N1 C2 N3 S2 180.0 180.1
C2 N3 C4 O4 180.5 180.0
C2 N3 C4 C5 0.2 360.0
C4 N3 C2 H16 180.0 180.0
C2 N3 C4 H16 180.0 180.0
O4 C4 N3 C5 180.2 180.1
N3 C4 C5 C6 359.2 360.0
N3 C4 C5 C3 179.3 180.0
N3 C4 O4 C5 179.7 179.9
O4 C4 N3 H16 0.5 0.1
O4 C4 C5 C6 179.0 179.9
O4 C4 C5 C3 359.1 359.9
N1 C6 C5 C4 0.7 0.0
N3 C4 C5 O4 180.3 180.1
C5 C4 N3 H16 180.3 180.0
C6 C5 C4 C3 179.9 180.0
C4 C5 C6 H1 180.7 180.1
C4 C5 C3 N2 189.6 0.0
C4 C5 C3 H12 9.6 180.0
C5 C6 N1 C1' 180.0 180.3
N1 C6 C5 H1 180.0 180.0
C4 C5 C6 C3 180.1 180.0
C6 C5 C3 N2 9.7 180.0
C6 C5 C3 H12 189.7 0.0
C4 C5 C3 C6 179.9 180.0
C3 C5 C6 H1 0.6 0.1
C5 C3 N2 C7 180.2 180.0
N2 C3 C5 H12 180.0 180.0
N1 C1' C2' O4' 119.5 118.5
N1 C1' C2' H2 237.1 237.1
C2' C1' O4' C4' 354.2 319.9
O4' C1' C2' H2 117.6 118.7
O2' C2' C1' C3' 227.3 241.8
C1' C2' O2' H3 180.0 180.0
O2' C2' C1' H4 114.8 123.6
C1' C2' C3' O3' 70.2 97.8
C1' C2' C3' C4' 314.8 339.1
C3' C2' C1' H4 247.5 241.8
C1' C2' C3' H6 199.5 220.3
N1 C1' O4' C2' 236.7 241.5
N1 C1' O4' H2 120.1 123.0
O4' C1' C2' O2' 259.5 278.9
O4' C1' C2' C3' 32.2 37.0
C2' C1' O4' H2 243.4 241.5
O4' C1' C2' H4 144.7 155.3
C3' C4' O4' C1' 337.3 26.5
C1' O4' C4' C5' 99.3 145.9
C1' O4' C4' H7 220.4 267.1
O2' C2' C1' O4' 259.5 278.9
C1' C2' O2' C3' 115.6 112.7
O2' C2' C1' H2 141.9 160.2
C1' C2' O2' H4 246.2 236.4
O2' C2' C3' O3' 186.9 216.0
O2' C2' C3' C4' 71.5 97.3
C3' C2' O2' H4 130.6 123.7
O2' C2' C3' H6 316.2 338.5
C3' C2' C1' O4' 32.2 37.0
C1' C2' C3' O2' 243.3 241.9
C3' C2' C1' H2 274.6 278.4
C1' C2' C3' H4 112.2 118.2
C3' C2' O2' H3 64.4 67.4
O2' C2' C3' H4 228.9 236.4
O3' C3' C2' C4' 115.4 118.7
C2' C3' O3' H5 180.0 61.5
O3' C3' C2' H6 230.7 237.5
C2' C3' C4' O4' 41.9 358.0
C2' C3' C4' C5' 284.4 238.6
C4' C3' C2' H6 115.3 118.8
C2' C3' C4' H7 159.3 117.4
C2' C3' O3' C4' 247.9 245.2
O3' C3' C2' H4 317.9 339.6
C2' C3' O3' H6 128.7 122.5
O3' C3' C4' O4' 277.4 239.3
O3' C3' C4' C5' 160.0 119.9
C4' C3' O3' H6 240.8 237.3
O3' C3' C4' H7 34.9 358.7
C1' O4' C4' C3' 337.3 26.5
C2' C3' C4' O3' 124.4 118.7
C4' C3' C2' H4 202.5 220.9
C2' C3' C4' H6 244.6 241.3
C4' C3' O3' H5 292.1 176.2
O3' C3' C4' H6 120.1 122.6
O4' C4' C3' C5' 117.5 119.4
O4' C4' C3' H7 242.6 240.6
C3' C4' C5' O5' 294.1 185.0
C5' C4' C3' H7 125.1 121.2
C3' C4' C5' H8 54.3 305.0
C3' C4' C5' H9 174.0 65.0
C4' O4' C1' H2 110.8 78.5
C3' C4' O4' C5' 238.0 240.6
O4' C4' C3' H6 157.3 116.7
C3' C4' O4' H7 116.9 119.4
O4' C4' C5' O5' 180.5 67.2
C5' C4' O4' H7 238.9 238.8
O4' C4' C5' H8 300.6 187.2
O4' C4' C5' H9 60.4 307.2
C3' C4' C5' O4' 113.6 117.8
C5' C4' C3' H6 39.8 357.3
C3' C4' C5' H7 235.0 238.9
O4' C4' C5' H7 121.4 121.1
C4' C5' O5' P 127.1 180.0
O5' C5' C4' H8 239.9 240.0
O5' C5' C4' H9 120.2 120.0
H8 C5' C4' H9 240.3 240.0
O5' C5' C4' H7 59.1 306.1
C4' C5' O5' H8 120.1 120.0
C4' C5' O5' H9 239.9 240.0
C5' O5' P OP1 1.4 295.0
C5' O5' P OP2 132.3 55.0
C5' O5' P OP3   175.0
H8 C5' O5' H9 119.7 120.0
P O5' C5' H8 7.0 60.0
P O5' C5' H9 247.2 300.0
OP1 P O5' OP2 229.0 240.0
O5' P OP1 H10 124.4 299.9
OP1 P O5' OP3   120.0
OP2 P O5' OP3   240.0
O5' P OP3 H18   180.0
O5' P OP1 OP2 124.5 120.0
O5' P OP1 OP3   240.0
OP2 P OP1 OP3   120.0
OP1 P OP3 H18   60.0
O5' P OP2 OP1 235.4 240.0
O5' P OP2 OP3   120.0
OP2 P OP1 H10 360.0 180.0
OP1 P OP2 OP3   240.0
OP2 P OP3 H18   300.0
C5 C3 N2 H12 180.0 180.0
C3 N2 C7 C1 256.0 115.0
C3 N2 C7 H13 17.2 235.0
C3 N2 C7 H14 134.9 355.0
C7 N2 C3 H12 0.2 360.0
N2 C7 C1 O2 178.0 359.9
N2 C7 C1 O1 2.7 180.0
C1 C7 N2 H13 238.8 240.0
C1 C7 N2 H14 121.2 120.0
H13 C7 N2 H14 242.4 240.0
N2 C7 C1 H13 121.2 120.0
N2 C7 C1 H14 238.8 240.0
O2 C1 C7 O1 175.2 179.9
C7 C1 O1 H15 174.8 180.0
H13 C7 C1 H14 117.6 120.0
C7 C1 O2 O1 185.2 180.1
O2 C1 C7 H13 56.7 239.9
O2 C1 C7 H14 299.1 120.0
O2 C1 O1 H15 0.0 0.1
C7 C1 O1 O2 174.8 179.9
O1 C1 C7 H13 241.5 60.0
O1 C1 C7 H14 123.9 300.1
H1 C6 N1 C1' 360.0 0.3
N1 C6 H1 C5 180.0 180.0
H1 C6 C5 C3 0.6 0.1
N1 C1' H2 C2' 126.0 122.9
N1 C1' H2 O4' 240.1 237.0
C2' C1' H2 O4' 114.1 114.1
H2 C1' C2' O2' 141.9 160.2
H2 C1' C2' C3' 274.6 278.4
H2 C1' C2' H4 27.1 36.6
H2 C1' O4' C4' 110.8 78.5
H3 O2' C2' C3' 64.4 67.4
H3 O2' C2' H4 293.8 303.7
H4 C2' C1' O4' 144.7 155.3
C1' C2' H4 O2' 111.4 123.6
C1' C2' H4 C3' 251.9 247.3
H4 C2' C1' H2 27.1 36.6
O2' C2' H4 C3' 140.5 123.7
H4 C2' O2' H3 293.8 303.7
H4 C2' C3' O3' 317.9 339.6
H4 C2' C3' C4' 202.5 220.9
H4 C2' C3' H6 87.2 102.1
H5 O3' C3' C4' 292.1 176.2
H5 O3' C3' H6 51.3 298.9
C2' C3' H6 O3' 226.6 237.5
C2' C3' H6 C4' 109.2 114.9
H6 C3' C2' H4 87.2 102.1
O3' C3' H6 C4' 242.7 237.4
H6 C3' O3' H5 51.3 298.9
H6 C3' C4' O4' 157.3 116.7
H6 C3' C4' C5' 39.8 357.3
H6 C3' C4' H7 274.7 236.1
C3' C4' H7 O4' 248.1 242.2
C3' C4' H7 C5' 127.9 121.1
H7 C4' C3' H6 274.7 236.1
O4' C4' H7 C5' 239.8 238.9
H7 C4' C5' O5' 59.1 306.1
H7 C4' C5' H8 179.2 66.1
H7 C4' C5' H9 298.9 186.1
C4' C5' H8 O5' 239.2 240.0
H8 C5' C4' H7 179.2 66.1
C4' C5' H8 H9 119.6 120.0
H8 C5' O5' P 7.0 60.0
O5' C5' H8 H9 240.4 240.0
C4' C5' H9 O5' 120.8 120.0
H9 C5' C4' H7 298.9 186.1
C4' C5' H9 H8 240.4 240.0
H9 C5' O5' P 247.2 300.0
O5' C5' H9 H8 119.6 120.0
H10 OP1 P OP2 360.0 180.0
H10 OP1 P OP3   60.0
C5 C3 H12 N2 180.0 180.0
H12 C3 N2 C7 0.2 360.0
N2 C7 H13 C1 232.5 240.0
N2 C7 H13 H14 116.2 120.1
H13 C7 C1 O2 56.7 239.9
H13 C7 C1 O1 241.5 60.0
C1 C7 H13 H14 243.8 240.0
N2 C7 H14 C1 127.5 120.0
N2 C7 H14 H13 243.7 239.9
H14 C7 C1 O2 299.1 120.0
H14 C7 C1 O1 123.9 300.1
C1 C7 H14 H13 116.3 119.9
C2 N3 H16 C4 180.0 180.0
H16 N3 C4 O4 0.5 0.1
H16 N3 C4 C5 180.3 180.0
O5' P OP3 OP1   120.0
O5' P OP3 OP2   240.0
OP1 P OP3 OP2   120.0
OP3 P OP1 H10   60.0